BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26660.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932958 jgi|Araly1|932958|scaffold_400946.1 1376 0.0
> Ahg932958 jgi|Araly1|932958|scaffold_400946.1
Length=912
Score = 1376 bits (745), Expect = 0.0
Identities = 842/889 (95%), Gaps = 5/889 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTTCGGCAAGAGCCTAAGCAACCAGATCGAAGAAACTTTACCTGAATGGCGCGAC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGAAATTCGGCAAGAGCCTAAGCAACCAGATCGAAGAAACTTTACCTGAATGGCGCGAC 82
Query 61 AAATTCCTCTCATACAAAGAACTCAAGAAGAAGCTCAAGCTTATGGAGCCACGAAGCGTC 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 83 AAATTTCTCTCCTACAAAGAACTCAAGAAGAAGCTCAAGCTTATGGAGCCACGAACCGTC 142
Query 121 GAGAATCGTCCAAATAAACGTTCGAGATCCGATTCCAATTCTGTCGACACAGATCCAACG 180
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 143 GAGAATCGTCCAACCAAACGTTCGAGATCCGATTCCAATTCTGTCGACGCAGATCCAACG 202
Query 181 GTTGGTATGACCAAGGAAGAGCTTGATTTCATTAGTCTTCTTGAAGATGAGCTTGAGAAA 240
| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 203 GCTGGTATGACCAAGGAAGAGCTCGATTTCATTAGTCTTCTCGAAGACGAGCTTGAGAAA 262
Query 241 TTCAATTCCTTCTTCGTTGAGCAAGAGGAAGAGTATATCATTAGATTGAAGGAATTGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 263 TTCAATTCCTTCTTCGTTGAGCAAGAGGAAGAGTATATCATTAGATTAAAGGAATTGAAG 322
Query 301 GACCAAGTGGCGAAA-GCGAAGAATTCTAATGAAGAGATGATAAATATAAAGAAAGAGAT 359
|| |||||||| ||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 323 GATCAAGTGGC-AAAGGCGACGAATTCGAATGAAGAGATGATAAATATAAAGAAAGAGAT 381
Query 360 TGTTGATTTTCATGGAGAAATGGTTTTGTTGATGAATTATAGTGCTCTTAACTATACAGG 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 382 TGTTGATTTTCATGGAGAAATGGTTTTGTTAATGAATTATAGTGCTCTTAACTATACAGG 441
Query 420 ATTGGCAAAGATTCTCAAAAAGTATGACAAAAGAACCGGTGCTTTAATCCGTTTACCATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATTGGCAAAGATTCTCAAAAAGTATGACAAAAGAACCGGTGCTTTAATCCGTTTACCATT 501
Query 480 TATCCAAAAGGTTTTGCAAGAACCTTTCTTCACAACTGACCTACTCAACACATTTGTGAA 539
||||||||||||| | ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 502 TATCCAAAAGGTTCTACAAGAACCTTTCTTCACTACCGACCTGCTCAACACATTTGTGAA 561
Query 540 AGAGTGCGAGGCTATGCTGGACCGCCTCTTTCCGTCTAACAAAAGTCGGAATCTGGATGA 599
|||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 562 AGAGTGCGAGGCTATGCTCGACCATCTCTTCCCGTCTAACAAAAGTCGGAATCTGGATGA 621
Query 600 AGAAG-GAGAG--CCGACAACTTCTGGAATGGTCAAGACAGGAACGGACGATTCTGAACT 656
||||| | ||| |||||||||||||||| ||||||||||| ||| ||||| ||||| ||
Sbjct 622 AGAAGAGGGAGAACCGACAACTTCTGGAACGGTCAAGACAGCAACAGACGACTCTGATCT 681
Query 657 TCTTAGAGTACCAAAAGAACTGTCTGAGATTGAGTACATGGAGAGCTTGTATATGAAGAG 716
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 682 TCTTAGAGTACCGAAAGAACTGTCTGAGATTGAGTATATGGAGAGCTTGTTTATGAAGAG 741
Query 717 CACTGTGTCGGCATTAAAAGTATTAAAGGAAATCCGCAGTGGTAGCTCAACAGTTAGCGT 776
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 742 CACTGTTTCGGCATTAAAGGTATTAAAGGAAATCCGCAGTGGTAGCTCAACAGTAAGCGT 801
Query 777 CTTCTCGTTGCCACCGTTACCGGCAAGTGGATTAGAAGATGATTCATGGAAGAAGAAAGT 836
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 802 CTTCTCGATGCCACCATTACCGGCAAGTGGATTAGAAGATGATTCATGGAAGAAGAAGGT 861
Query 837 TGGTGTCCTTGAACAAGTAGCGAAATGAATTATGAGTATTATTATTTTT 885
||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 862 TGGTGTCCTCGAACAAGTAGCGAAATGAATTATGACTATTATTATTTTT 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5