BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26670.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1 1574 0.0
Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006 676 0.0
Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1 497 6e-140
> Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1
Length=1112
Score = 1574 bits (852), Expect = 0.0
Identities = 1040/1127 (92%), Gaps = 27/1127 (2%)
Strand=Plus/Plus
Query 21 CCTATTTAAAAATTCAATTAGAATAGTGTA-TCCCTCTTCTCTATTCCTTCAAGCCAACT 79
||||||||||||||||||| |||| ||| | ||||||||||||||||||||||| |||||
Sbjct 1 CCTATTTAAAAATTCAATTGGAATTGTG-AGTCCCTCTTCTCTATTCCTTCAAGGCAACT 59
Query 80 AAAACTACATTGCGTGACTTCTTCTGTAACCATTTTTCTATTCCGATCAAACCATGGCGT 139
||||||||||||| | || | | ||| ||||||||||| ||||| |
Sbjct 60 AAAACTACATTGC--G--------TG--A-C----TTC--TTCCGATCAAA-TATGGCTT 99
Query 140 ATTTAGCTCCGATTTCTTCATCCTTATCCATATTCAAGAATCCCCAACTCTCAAGATTCC 199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 ATTTAGCTCCGATTTCGTCATCCTTATCCATATTCAAGAATCCCCAACTCTCAAGATTCC 159
Query 200 AATTTTCTTCTTCCTCACCGAACCCACTTTTCCTTCGACCTAGGATTCAGATTCTGAGTA 259
||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 160 AATTTTCTTATTCCCCACCAAACCCATTTTTCCTTCGACCTAGGATTCAGATTCTGAGTA 219
Query 260 TGACC-ATGAACAAGTCGCCGTCTTTAGTGGTGGTTGCGGCTACTACTGCGGCAGAGAAG 318
|| || |||| |||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 220 TG-CCGATGAGCAAGACGCCGTCTTTAGTGGTGGTTGCGGCCACTACAGCGGCGGAGAAG 278
Query 319 CAGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CAGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCT 338
Query 379 ATGAGACTTCATACTAAAGATCAAGCTAAGGAAGGTGAGAAAGAGACTAAATCTATTGAG 438
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 ATGAGACTACATACGAAAGATCAAGCTAAGGAAGGTGAGAAAGAGACTAAATCTATTGAG 398
Query 439 GAACGTCCTGTTGCTAAATGGGAACCTACTGTTGAAGGTTACTTGAGGTTTCTTGTGGAT 498
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 399 GAACGTCCCGTGGCTAAATGGGAACCGACTGTTGAAGGTTACTTGAGGTTTCTTGTGGAC 458
Query 499 AGTAAATTGGTTTATGATACTCTTGAACTGATTATTCAAGACTCCAATTTCCCAACTTAT 558
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 459 AGTAAATTGGTTTATGATACTCTTGAACAGATTATTCAAGATTCCGATTTCCCAACTTAT 518
Query 559 GCCGAGTTCAAGAACACGGGGCTGGAAAGAGCGGAGAAATTATCCACGGATTTGGAGTGG 618
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 519 GCCGAATTCAAGAACACGGGGCTGGAAAGGGCGGAGAAATTGGCCACGGATTTGGAGTGG 578
Query 619 TTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGTAAAACATATTCTCAA 678
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 579 TTCAAGGAACAAGGCTACGAGATTCCAGAACCAACTGCTCCTGGTAAAACATATTCTCAG 638
Query 679 TATTTAAAGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATC 738
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TATTTAAGGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATC 698
Query 739 TACTTTGCTCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTGGCAGAGCGGATACTC 798
||||| || ||||||||||||||||||||||||||||||||||| || ||| | |||||
Sbjct 699 TACTTCGCCCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTAGCTGAGAGAATACTT 758
Query 799 GATAATAAAGAACTCGAGTTCTACAAATGGGACGGCGAACTTTCTCAATTGTTGCAGAAC 858
|| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 759 GACAATAGAGAACTCGAGTTCTACAAATGGGACGGCGAACTATCCCAATTGTTGCAGAAC 818
Query 859 GTTAGGGAGAAACTGAACAAGGTTGCAGAGGAGTGGACTAGAGAAGAAAAGAATCATTGT 918
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 819 GTTAGGGAGAAACTGAACAAAGTTGCCGAGGAGTGGACGAGAGAAGAAAAGAATCATTGT 878
Query 919 TTGGAAGAGACTGAGAAATCGTTCAAGTATTCTGGTGAGATACTTCGTCTCATATTGTCC 978
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 879 TTGGAAGAGACGGAGAAATCGTTCAAGTATTCTGGTGAAATACTTCGTCTGATATTGTCC 938
Query 979 TGATTTGG-TGCGCAGTGTCTCTAGATATCTCAATACGTCTTGTGGCAACTAAAATGATG 1037
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 939 TGATTTGAAT-CGCAGTGTCTCTAGATATCTCAATACGGCTTGTGGCAACTAAAATCCTG 997
Query 1038 CACATTGTTTATATTCCTGTATTATATTAATCATCTTCTACATGTA-TTAAACTCTTCTT 1096
||||||||||||||||||| |||||||| |||||||||||| | | |||||||||||||
Sbjct 998 CACATTGTTTATATTCCTGCATTATATTCATCATCTTCTACTTCTTGTTAAACTCTTCTT 1057
Query 1097 TGCTTCAAAGCTGTTACTAAGTTCAAGGTTCAAATTAATAACTTTTC 1143
|||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1058 TGCTTCAAAGCTATTACTAAGTTCATGGTTCAAATTAATAACTTTTC 1104
> Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006
Length=858
Score = 676 bits (366), Expect = 0.0
Identities = 579/680 (85%), Gaps = 22/680 (3%)
Strand=Plus/Plus
Query 313 GAGAAGC-AGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTT 371
||||||| | || |||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 190 GAGAAGCAACAA-AAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAAGAGATGAGGTT 248
Query 372 TGTGGCTATGAGACTT-CATACTAAAGATCAAGCTAA-GGAAGGTGAGAAAGAGA-CTAA 428
|||||| |||||| || ||||| ||||||||||| || |||||| || ||||| | ||||
Sbjct 249 TGTGGCAATGAGA-TTGCATACGAAAGATCAAGC-AAGGGAAGGAGAAAAAGA-ATCTAA 305
Query 429 ATCTATTGAGGAACGTCCTGTTGCTAAATGGGAACCTACTGTTGAAGGTTACTTGA-GGT 487
|||| |||||| |||| || || ||||||||||| || || ||||| ||||| | ||
Sbjct 306 ATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAACCAACGGTGGAAGGATACTT-ACAGT 364
Query 488 TTCTTGTGGATAGTAAATTGGTTTATGATACTCTTGAACTGATTATTC-AAGACTCCAAT 546
|||||||||||||||| |||||||| || || ||||| ||| | || | || ||||||
Sbjct 365 TTCTTGTGGATAGTAAGTTGGTTTACGACACACTTGAGGGGATCA-TCGACGATTCCAAT 423
Query 547 TTCCCAACTTATGCCGAG-TTCAAGAACACGGGGCTGGAAAGAGCGGAGAAATTAT-C-C 603
|||||||||||||||| | |||||||| ||||| |||||||||| ||| | || | |
Sbjct 424 TTCCCAACTTATGCCG-GTTTCAAGAATACGGGATTGGAAAGAGCAGAG-AGTT-TGCGG 480
Query 604 ACGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGT 663
| ||||||||| |||||||||||||||||||| || |||||||| || | |||||||||
Sbjct 481 AAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAAATTCCAGAGCCGATGGCTCCTGGT 540
Query 664 AAAACATATTCTCAATATTTAAAGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGT 723
|||||||||||| | |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 541 AAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAACGATCCTCAAGCATTCATTTGT 600
Query 724 CACTTCTACAACATCTACTTTGCTCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTG 783
|||||||||||||| ||||||||||||||||| ||||| | ||||||||| | |||||
Sbjct 601 CACTTCTACAACATTTACTTTGCTCATAGTGCCGGTGGCCAAATGATTGGAACTAAGGTA 660
Query 784 GCAGAGCGGATACTCGATAATAAAGAACTCGAGTTCTACAAATGGGACGG-CGAACTTTC 842
| ||| |||||||||| ||||||||||||||||||| || |||||||| | | |||||
Sbjct 661 TCTGAGAAGATACTCGATGATAAAGAACTCGAGTTCTATAATTGGGACGGTC-ATCTTTC 719
Query 843 TCAATTGTTGCAGAACGTTAGGGAGAAACTGAACAAGGTTGCAGAGGAGT-GGACTAGAG 901
||||||||||||||| || ||| | ||||||||||| ||||||||| || |||| ||||
Sbjct 720 TCAATTGTTGCAGAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGT-GTTGGACAAGAG 778
Query 902 AAGAAAAGAATCATTGTTTGGAAGAGACTGAGAAATCGTTCAAGTATTCTGGTGAGATAC 961
|||| ||||||||||||||||||||||| |||||||||||||||| ||| || ||||| |
Sbjct 779 AAGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGTTCAAGTTTTCCGGGGAGATTC 838
Query 962 TTCGTCTCATATTGTCCTGA 981
||||||| ||||||||||||
Sbjct 839 TTCGTCTTATATTGTCCTGA 858
> Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1
Length=876
Score = 497 bits (269), Expect = 6e-140
Identities = 540/665 (81%), Gaps = 42/665 (6%)
Strand=Plus/Plus
Query 328 AGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCT-ATGAGACT 386
|||||||||||||| ||||||| |||||||||||||||||||| |||| | |||| | |
Sbjct 235 AGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTGG-TGATGAAAAT 293
Query 387 TCATACTAAAGATCAAGCT-AAGGAAGGTGAGAAAGAGACTAAATCTATTGAGGAACGTC 445
|| | | ||||| || | || ||| | || ||| | | | | || | | | |||
Sbjct 294 GCACCCGAGAGATC-AGGTAAAAGAA-G-GA-AAA-A-A-TGAGTCCA---ACG---GTC 340
Query 446 CTGT-TGCTAAATGGGAACCT-ACTGTTGAAGGTTACTTGAGGTTTCTTGTGGATAGTAA 503
||| | | || | |||| | || | ||||| ||||||| |||||| |||||||||||
Sbjct 341 TTGTAT-C-AACTTGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGATAGTAA 398
Query 504 -ATTGGT-TTATGATACTCTTGAACTGATTATTCAA-GACTCCAATTTCCCAA-CTTATG 559
|| || || ||| || ||||||| ||||||| || || || | | | |||| ||||||
Sbjct 399 GCTT-GTGTT-TGAGACGCTTGAACGGATTATT-AACGAATCTACTCT-CCAAGCTTATG 454
Query 560 CCGAGTTCAAGAACACGGGGCTGGAAA-GAGCGGAGAAATT-ATCCACGGATTTGGAGTG 617
||| | |||| ||||| ||| |||||| || | ||||| || | | ||||||||||||
Sbjct 455 CCGGGCTCAAAAACACAGGGTTGGAAAGGA-CAGAGAATTTGA-GTAGGGATTTGGAGTG 512
Query 618 GTTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGTAAAACATATTCTCA 677
|||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 513 GTTCAAGGAACAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTCA 572
Query 678 ATATTTAAAGGAAT-TAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACA 736
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GCATTTAAAG-AATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACA 631
Query 737 TCTACTTTGCTCATAGTGCTGGTGGACGAATGATT-GGCAGAAAGGTGGCAGAGCGGATA 795
|||||||||| |||||||||||||| ||||||||| || | |||||| || ||| ||||
Sbjct 632 TCTACTTTGCACATAGTGCTGGTGGTCGAATGATTAGG-ACAAAGGTTGCTGAGAAGATA 690
Query 796 CTCGATAATAAAGAACTCGAGTTCTACAAATGGGACGGCGAACTTTCTC-AATTGTTGCA 854
||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||
Sbjct 691 CTCGACAATAAAGAACTCGAGTTCTACAAATGGGATGGCCAACTTTC-CGAATTGTTGCA 749
Query 855 GAACGTTAGGGA-GAAACTGAACAAGGTTGCAGAGGAGTGGACTAGAGAAGAAAAGAATC 913
||||| || || ||| ||||||| || || ||| |||||| |||||||| |||||||
Sbjct 750 AAACGTGAGTGAAGAAT-TGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGAATC 808
Query 914 ATTGTTTGGAAGAGACTGAGAAATCGTTCAAGTATTCT-GGTGAGATACTTCGTCTCATA 972
||||||||| |||||| |||| ||||||||||| || | || ||||| ||||| || ||
Sbjct 809 ATTGTTTGGCAGAGACAGAGATATCGTTCAAGTTTTATTGG-GAGATTTTTCGTTTCTTA 867
Query 973 TTGTC 977
||||
Sbjct 868 ATGTC 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5