BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26680.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481533 jgi|Araly1|481533|fgenesh2_kg.4__593__AT2G26680.1 1965 0.0
> Ahg481533 jgi|Araly1|481533|fgenesh2_kg.4__593__AT2G26680.1
Length=1270
Score = 1965 bits (1064), Expect = 0.0
Identities = 1206/1275 (95%), Gaps = 7/1275 (1%)
Strand=Plus/Plus
Query 1 CGAATCCATCTTTTCCCACCCAAGATCTCTCCTTCTTGTTTCCCCAGATCTGAAATTTCA 60
|||||||| |||||||||||| |||||||||||| |||||||| |||||||| |||||||
Sbjct 1 CGAATCCAGCTTTTCCCACCCTAGATCTCTCCTTGTTGTTTCCTCAGATCTGCAATTTCA 60
Query 61 AAAGCTACCCAATTTTAACTCAAGACTCTGAACAACACATCTAGATCCATTTCCATGGCG 120
|||||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 61 AAAGCTACCC-ATTTTAACTC-AGACTCTGAGCAACACATCTGGATCCATTTCCATGGCG 118
Query 121 AGCGCCTGGAAAAAAGACAAGAACCAAAAACTTTTATCACCAAAGACACTAATCTCACTT 180
| ||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 119 AACGCCTGGAAAAGAGACAAGAACCAGAAGCTTTTATCACCAAAGACACTAATATCACTT 178
Query 181 CTTGTCCTTTCCATTAtcttcctctcttctctcttcttcttcttctctaactcctctctc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTTGTCCTCTCCATTATCTTCCTCTCTTCTCTCTTCTTCTTCTTCTCTAACTCCTCTCTC 238
Query 241 caatactccaatccaaatctctccatcaattccCCATACCCTATCCCTCCTTTTGATTGC 300
|||||||| ||||| |||||||| |||||||| |||| || |||||||| |||||||||
Sbjct 239 CAATACTCTAATCCCAATCTCTCAATCAATTCACCATTTCCAATCCCTCCCTTTGATTGC 298
Query 301 TTCAAATGTCCACAATCAAAACCCATAATCGCAAACGTCGTCGAAAATCTCAAGTACCCT 360
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 299 TTCAAATGTCCCCAGTCAAAACCAATAATCGCAAACGTCGTCGAGAATCTCAAGTACCCT 358
Query 361 TTTGTTTACTCTCTCGCTGATCTCGGTAATCTCCCGGAGAAACCACATAAGAACATTGTT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 TTTGTTTACTCTCTCGCTGATCTCGGTAATCTCCCGGAGAAACCACACAAGAACATTGTT 418
Query 421 AGGCTACTTAAAGGTAAGCCCTTTAGGAAACCAGATATCTCCGCAACGATTCAGGAGGTA 480
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 AGGCTGCTTAAAGGAAAGCCCTTTAGGAAACCAGATATCTCCGCCACGATTCAGGAGGTT 478
Query 481 TTGGATAGTATGAGAGCTAGTGGTAAAAATGGGATTGTTGTTGATGTTGGAGCTAATGTT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGGAGAGTATGAGAGCTAGTGGTAAAAATGGGATTGTTGTTGATGTTGGAGCTAATGTT 538
Query 541 GGTATGGCTAGCTTTGCTGCTGCGGTTATGGGGTTTAAAGTTCTTGCCTTTGAGCCTGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGTATGGCTAGCTTTGCTGCTGCGGTTATGGGGTTTAAAGTTCTTGCCTTTGAGCCTGTT 598
Query 601 TTTGAGAATTTACAGAGGATTTGTGATGGGATTTGGTTTAATAGAGTTGCTTCTTTGGTT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 599 TTTGAGAATTTACAGAGGATTTGTGATGGCATTTGGTTTAATAGAGTTGCTGCTTTGGTT 658
Query 661 ACTGTGTTTGAAGCTGCTGCTTCTGACAGAACAGGGGATATTACCTTCCATAAGTTGGTA 720
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 659 ACTGTGTTTGAAGCTGCTGCTTCTGACAGAACAGGGGACATTACATTTCATAAGTTGGTT 718
Query 721 GGACGGCTTGACAATAGCGCGGTTTCGGAGGTGGGAGCAAGGCTTGCATTCAAGTCCAAC 780
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 719 GGACGGCTTGACAATAGCGCGGTTTCGGAGGTGGGAGCAAGACTTGCATTCAAGTCAAAC 778
Query 781 AAAGAGATAGCAGTGCAAGTCAAATCCATACCTCTTGATAAACTAATTCCACCTTCTCAA 840
||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 779 AAAGAAATAGCAGTCCAAGTGAAATCCATACCTCTTGACAAACTAATTCCACCTTCTCAA 838
Query 841 CCTGTTCTTCTTATCAAGATCGACGTTCAAGGTTGGGAATACCACGTTTTAAAGGGTGCG 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTGTTCTTCTTATCAAGATCGACGTTCAAGGTTGGGAATACCACGTTTTAAAGGGTGCA 898
Query 901 AAGAAGTTGCTTTCAGGGAAACCAGCAGAAGCTCCTTATCTAATCTATGAGGAAGATGAG 960
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGAAGTTACTTTCAAGGAAACCGGCAGAAGCTCCTTATCTAATCTATGAGGAAGATGAG 958
Query 961 AGATTGCTCACGGCAAGCAATAGTAGCTCGAAAGAGATACGTGATTTTCTT-AAAAGCGT 1019
||||| |||| |||||| ||||||||||| |||||||||||||||||| || ||||| ||
Sbjct 959 AGATTACTCAAGGCAAGTAATAGTAGCTCCAAAGAGATACGTGATTTT-TTGAAAAGTGT 1017
Query 1020 TGGATATAGTAAGTGTAGCCAGCATGGGACAGATGCACATTGCACCAAGGAGTGAAAGAC 1079
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 TGGATATAGCAAGTGTAGCCAGCATGGCACAGATGCACATTGCACCAAGGAGTGAAAGAC 1077
Query 1080 ATTGGACTTACCGACAAATGGTAATAAGATGCCATA-CAAGTTGAGGAATATAAGGAAGA 1138
| |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1078 ACCGGACATACCGACAAATGGTAATAAGATGCCATAACAAGTTGAGGAATATAAGAAAGA 1137
Query 1139 TGAGCAATAGGTATTTGCAGAGAAAAACATTTAGTTTATAAGTTGCCAAATTTGGTCAGT 1198
|| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGGGCAAGAGGTATT-GCAGAGAAAAACATTTAGTTTATAAGTTGCCAAATTTGGTCAGT 1196
Query 1199 CATGTTTGTTTCTCCTTGTAATATGTACTCAAtttttttGGTATATTTCTGTGATGCATA 1258
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1197 CATGTTAGTTTCTCCTTGTAATATGTACTCAATTTTTC-GGTATATTTCTGTGATGCATA 1255
Query 1259 TCAATGATCAGTTCT 1273
|||||||||||||||
Sbjct 1256 TCAATGATCAGTTCT 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5