BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26690.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932963 jgi|Araly1|932963|scaffold_400951.1 2828 0.0
> Ahg932963 jgi|Araly1|932963|scaffold_400951.1
Length=1778
Score = 2828 bits (1531), Expect = 0.0
Identities = 1695/1775 (95%), Gaps = 7/1775 (0%)
Strand=Plus/Plus
Query 65 GATATAGaa-aaaaaTGGAGAGCAAAGGGAGTTGGACAGTGGCTGATGCCGTAGACTACA 123
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GATATAGAAGGAAAATGGAGAGCAAAGGGAGTTGGACAGTGGCTGATGCCGTAGACTACA 66
Query 124 AAGGACGACCTGCCGACAAATCCAAAACCGGTGGTTGGATCACTGCCGCTCTCATTCTTG 183
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 67 AAGGCCGACCTGCCGACAAATCCAAAACCGGTGGCTGGATCACTGCAGCTCTCATTCTTG 126
Query 184 GGATAGAAGTTGTGGAGAGGCTATCAACAATGGGAATAGCAGTGAATTTGGTAACATATT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GGATAGAAGTTGTGGAGAGGCTATCAACAATGGGAATAGCAGTGAATTTGGTAACATATT 186
Query 244 TGATGGAGACAATGCATCTCCCAAGTTCAACCTCTGCCAACATTGTCACTGATTTCATGG 303
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 187 TGATGGAGACAATGCATCTCCCAAGTTCAACTTCTGCCAATATTGTCACTGACTTCATGG 246
Query 304 GCACTTCCTTCCTCCTATGCTTGCTCGGTGGTTTTCTCGCTGACTCCTTCCTCGGCCGTT 363
|||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||||
Sbjct 247 GCACTTCCTTCCTCCTTTGCCTGCTCGGCGGCTTTCTCGCTGACTCCTTCCTCGGACGTT 306
Query 364 TCAAAACCATCGGC-ATTTTCTCAACCATTCAAGCTCTGGGAACTGGTGCTCTAGCGGTA 422
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 307 TCAAAACCATC-GCTATTTTCTCAACCATTCAAGCTCTGGGAACTGGTGCACTAGCGGTA 365
Query 423 GCAACTAAGCTGCCAGAGCTACGTCCACCAACATGCCATCATGGAGAAGCTTGCATACCC 482
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 366 GCAACGAAGCTGCCGGAGCTACGTCCACCAACATGCCATCATGGGGAAGCTTGCATACCC 425
Query 483 GCGACCG-CCTTCCAAATGACAATTCTTTATGTTTCGCTTTACCTTATAGCCCTTGGAAC 541
|||| || |||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 426 GCGA-CGAGCTTCCAAATGACTATTCTTTATATTTCGCTTTACCTTATAGCTCTTGGAAC 484
Query 542 TGGTGGTCTTAAATCTAGTATCTCTGGATTTGGGTCTGACCAGTTTGATGACAAAGATCC 601
|||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 485 TGGTGGCCTTAAGTCTAGTATCTCCGGATTTGGATCTGACCAGTTTGATGACAAAGATCC 544
Query 602 TAAAGAGAAAGCTCACATGGCTTTCTTCTTCAACAGGTTCTTCTTCTTTATTAGTATGGG 661
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 545 TAAAGAAAAAGCTCACATGGCTTTCTTCTTCAACAGGTTCTTCTTCTTCATTAGCATGGG 604
Query 662 GACATTATTGGCTGTGACTGTTTTAGTTTACATGCAAGATGAAGTGGGAAGATCTTGGGC 721
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GACATTGTTGGCTGTGACTGTTTTAGTTTACATGCAAGATGAAGTGGGAAGATCTTGGGC 664
Query 722 TTATGGAATCTGCACTGTCTCTATGGCTATAGCTATTGTAATATTCTTGTGTGGGACTAA 781
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 665 TTATGGAATCTGCACTGTGTCTATGGCTATAGCAATTGTAATATTCTTGTGTGGGACTAA 724
Query 782 GAGATACCGTTATAAGAAGAGCCAAGGAAGTCCCGTTGTGCAAATATTTCAGGTCATAGC 841
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 725 GAGATACCGTTATAAGAAGAGCCAAGGAAGTCCCGTTGTGCAAATCTTTCAGGTTATAGC 784
Query 842 AGCTGCGTTCCGAAAGAGGAAAATGGAACTACCTCAAAGCATTGTTTATCTTTATGAAGA 901
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 AGCTGCGTTCAGAAAGAGGAAAATGGAACTGCCTCAAAGCATTGTTTATCTTTATGAAGA 844
Query 902 TAACCCTGAAGGCATTAGAATTGAACATACTGATCAGTTTCACTTGTTGGACAAGGCGGC 961
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 845 TAATCCTGAGGGCATAAGAATTGAACATACTGATCAGTTTCACTTGTTGGACAAGGCTGC 904
Query 962 CATAGTTGCAGAAGGAGATTTTGAACAAACCCTTGATGGAGTTGCAATCCCAAACCCTTG 1021
||||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||
Sbjct 905 CATAGTTGCAGAAGGAGATTTCGAACAAACCCTAGACGGAGTCGCAATTCCAAACCCTTG 964
Query 1022 GAAGCTAAGCTCAGTGACCAAAGTTGAGGAAGTAAAAATGATGGTTAGGCTTTTGCCTAT 1081
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 965 GAAGCTAAGCTCAGTGACCAAAGTTGAGGAAGTGAAAATGATGGTTAGGCTTTTGCCTAT 1024
Query 1082 TTGGGCAACAACTATAATTTTTTGGACAACATATGCCCAAATGATTACATTCTCTGTTGA 1141
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1025 TTGGGCAACAACTATAATTTTCTGGACAACATATGCCCAAATGATTACATTCTCGGTTGA 1084
Query 1142 GCAAGCTTCAACTATGAGACGTAACATTGGAAGCTTTAAGATCCCAGCTGGTTCCCTCAC 1201
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 1085 GCAAGCTTCAACTATGAGACGTAACATTGGAAACTTCAAGATCCCAGCTGGTTCGCTCAC 1144
Query 1202 CGTGTTTTTCGTTGCGGCTATTCTCATAACTCTAGCTGTCTACGACCGTGCCATAATGCC 1261
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1145 TGTGTTTTTCGTTGCGGCTATTCTCATAACTCTAGCTGTCTATGACCGTGCCATAATGCC 1204
Query 1262 TTTTTGGAAGAAATGGAAAGGAAAACCAGGTTTCTCTAGCCTACAAAGAATAGCTATTGG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TTTTTGGAAGAAATGGAAAGGAAAACCAGGTTTCTCTAGCCTACAAAGAATAGCTATTGG 1264
Query 1322 ATTGGTCTTATCAACCGCTGGAATGGCAGCTGCAGCTCTAG-TAGAGCAAAAGCGTTTAT 1380
||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||
Sbjct 1265 ATTGGTCTTATCAACCGCTGGAATGGCAGCTGCAGCTATAGCT-GAGCAGAAGCGTTTAT 1323
Query 1381 CCGTTGCGAAATCTAGTTCACAAAAAACATTGCCTATAAGTGTGTTTTTACTTGTTCCAC 1440
| |||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1324 CGGTTGTGAAATCTAGTTCACAAAAAACATTGCCAATAAGTGTATTCTTACTTGTTCCAC 1383
Query 1441 AATTCTTCTTAGTAGGAGCTGGGGAAGCCTTTATCTACACTGGCCAACTTGATTTCTTCA 1500
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1384 AATTCTTCTTAGTGGGAGCTGGGGAAGCGTTTATCTACACTGGCCAACTTGATTTCTTCA 1443
Query 1501 TAACACAATCGCCTAAGGGAATGAAAACTATGAGCACTGGACTCTTCTTGACCACTTTAT 1560
| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1444 TTACCCAATCGCCTAAGGGAATGAAAACAATGAGCACTGGCCTTTTCTTGACCACTTTAT 1503
Query 1561 CACTAGGTTTCTTTGTCAGCAGTTTCTTGGTCTCAATCGTCAAGAGGGTCACTTCAACTT 1620
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1504 CACTAGGTTTCTTTGTCAGCAGTTTCTTGGTCTCAATCGTTAAGAGGGTCACTTCAACTT 1563
Query 1621 CTACTGATGTAGGATGGCTGGCTGATAACATTAACCACGGCCGACTCGATTACTTTTATT 1680
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1564 CTACAGATGGAGGATGGCTGGCTGATAACATCAACCACGGCCGACTCGATTACTTTTATT 1623
Query 1681 GGCTTTTAGTCATTCTCAGTGGAATTAACTTCGTTGTCTATATCATATGTGCCTTGTGGT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GGCTTTTAGTCATTCTCAGTGGAATTAACTTCGTTGTCTATATCATATGTGCCTTGTGGT 1683
Query 1741 TTAAGCCAACGAAGGGTAAAGACTCAGTAGAGAAGGAAAATGGCAAGGGATTTTCAGTTG 1800
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1684 TTAAGCCAACGAAGGGTAAAGACTCAGCAGAGAAGGAAAATGGCAAGGGATTTTCAGTTG 1743
Query 1801 AAGACTGCTGAATTTTGTTTTGCAATAATTGTCTT 1835
||||||||| |||||||||||| ||||||| ||||
Sbjct 1744 AAGACTGCTAAATTTTGTTTTGAAATAATTTTCTT 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5