BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26700.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481536 jgi|Araly1|481536|fgenesh2_kg.4__596__AT2G26700.1 2566 0.0
> Ahg481536 jgi|Araly1|481536|fgenesh2_kg.4__596__AT2G26700.1
Length=1694
Score = 2566 bits (1389), Expect = 0.0
Identities = 1553/1634 (95%), Gaps = 3/1634 (0%)
Strand=Plus/Plus
Query 1 CCCTTGAGACGTATCTAATGGCTAATTCTAGTATCTTTTACAAAGATAATGAGTCCGATT 60
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CCCTTGAAACGTATCTAATGGCTAACTCTAGTATCTTTTACAAAGATAATGAGTCCGATT 60
Query 61 ATGAGAGCTCCACCGTCGGACCAGACTCGAGCCGCCGTACGAGTTGGCTGAGCAGCTCTT 120
||||||||||||||| |||||| ||||||||||| || ||||||||| ||||||||||||
Sbjct 61 ATGAGAGCTCCACCGCCGGACCGGACTCGAGCCGGCGCACGAGTTGGTTGAGCAGCTCTT 120
Query 121 TCACGGCTAGCCCTAGTTGTAGCTCCATATCTCATCTAAGTAACCATGGTCTCAACAGCT 180
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 121 TCACGGCTAGCCCTAGTTGTAGCTCCATATCTCATCTAAGTAACAATGGCCTCAACAATT 180
Query 181 ATAACCAATCAAAGCCTCACAAAGCCAACCAAGTCGCATGGGAAGCTATGGCCAGGCTCC 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAACCAATCAAAGCCTCACAAAGCCAACCAAGTCGCATGGGAAGCTATGGCCAGGCTCC 240
Query 241 GTCGGTGCTGCGGCCGTGCGGTAGGGTTAGAACATTTTCGGCTTTTAAAGAGGTTGGGAA 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCGGTGCTGCGGCCGTGCGGTCGGGTTAGAACATTTTCGGCTTTTAAAGAGGTTGGGAA 300
Query 301 GTGGTGACATCGGAAGTGTGTACCTCTGCCAAATACGTGGAAGTCCCGAGACGGCGTTTT 360
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 301 GTGGTGACATCGGAAGTGTGTACCTTTGTCAAATACGTGGAAGTCCCGAGACGGCGTTTT 360
Query 361 ATGCTATGAAAGTTGTGGATAAGGAAGCTGTTGCGGTGAAGAAAAAGCTTGGAAGGGCAG 420
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 361 ATGCTATGAAAGTTGTGGATAAGGAAGCTGTGGCAGTGAAGAAAAAGCTTGGAAGGGCGG 420
Query 421 AGATGGAGAAGAAGATTTTAGGGATGCTTGATCATCCTTTTTGCCCTACATTGTACGCAG 480
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 421 AGATGGAGAAGAAGATTCTAGGGATGCTTGATCATCCTTTTTGCCCTACTTTGTATGCAG 480
Query 481 CTTTTGAGGCTTCTCATTACTCTTTTCTCGTCATGGAGTATTGTCCCGGCGGTGATCTCT 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 CTTTTGAGGCTTCTCATTACTCTTTTCTTGTCATGGAGTATTGTCCCGGCGGTGATCTCT 540
Query 541 ACGCCGTCCGCCTCCGCCAACCGTCTAAACGTTTCACTATCTCCTCCACAAGGTTTTACG 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACGCCGCCCGCCTCCGCCAACCGTCTAAACGTTTCACTATCTCCTCCACAAGGTTTTACG 600
Query 601 CAGCAGAAACTCTAGTGGCCTTAGAGTATCTCCACATGATGGGAATTGTGTATAGAGACC 660
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 CAGCTGAAACTCTGGTGGCCTTAGAGTACCTCCACATGATGGGAATTGTGTATAGAGACC 660
Query 661 TAAAGCCAGAGAACGTGTTGATCAGAGAAGATGGTCATGTAATGCTCTCAGATTTCGATC 720
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 661 TAAAGCCAGAGAACGTGTTAATTAGAGAAGATGGTCACGTAATGCTCTCAGATTTCGATC 720
Query 721 TCTCCTTCAAATGTGACGTCGTTCCACAATTCCTCAGCGACAACGACCGTGACCGTGGCC 780
||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||||| ||||
Sbjct 721 TCTCCTTCAAATGCGACGTCGCTCCGCAACTCCTCAACGACAACGACCGTGACCGCGGCC 780
Query 781 ATCAAGAAGACGATGACGACATCAGCATTCGCCGTAAATGCTCTACACCTTCTTGCACGA 840
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 781 ATCAAGGAGACGATGAAGACATCAGCATCCGCCGTAAATGCTCTACACCTTCATGCACGG 840
Query 841 CAACTCCATTAAACCCCGTCATCTCCTGCTTCTCTCCCACTTCTAGCAGAAGAAGAAAGA 900
||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 841 CAACTCCGTTAAACCCTGTCATCTCCTGCTTCTCTCCAACTTCGAGCAGAAGAAGAAAGA 900
Query 901 AGAATGTTGTTACCACAACAATACACGAAAACGCAGCTGGTACTAGCGATTCTGTGAAAA 960
| ||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 901 AAAATGTTGTTACGACAACAATACACGAAAATGCAGCTGGTACTAGCCATACTGTGAAAA 960
Query 961 GTAACGATGTTTCAAGAACGTTTTCTCGATCACCTTCTTCTTGTTCTCGTGTTTCAAATG 1020
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 GTAACGATGTTTCAAGAACATTTTCTCGATCACCTTCATCTTGTTCTCGTGTTTCAAATG 1020
Query 1021 GACTTCGAGACATCTCTGGTGGATGTCCATCAATATTT-GCCGAACCAATCAATGCTCGC 1079
||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||| ||
Sbjct 1021 GACTTCGAGACATATCTGGTGGATGTCCATCAAT-TTTCGCCGAACCGATCAATGCACGA 1079
Query 1080 TCTAAGTCATTCGTGGGAACACATGAGTACTTGGCACCCGAAGTAATCTCAGGGCAAGGG 1139
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 TCTAAGTCGTTTGTGGGAACACATGAGTACTTGGCACCGGAAGTAATCTCAGGGCAAGGA 1139
Query 1140 CATGGGAGTGCAGTAGATTGGTGGACTTACGGGATATTTCTATACGAGATGATATTTGGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CATGGGAGTGCAGTAGATTGGTGGACTTACGGGATATTTCTATACGAGATGATATTTGGT 1199
Query 1200 AGGACACCGTTTAAAGGCGATAACAACGAGAAGACGTTAGTAAACATTCTGAAAGCACCC 1259
|||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 1200 AGGACACCGTTTAAAGGCGAAAACAACGAGAAAACGTTAGTCAACATTCTAAAAGCACCC 1259
Query 1260 TTGACATTCCCAAAGGTTATAGTGAATAGCCCCAAAGAGTACGAAGATATGGTGAATGCT 1319
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1260 TTGACATTCCCAAAGGTTATAGTGAATAGCCCTAAAGAGTACGAAGATATGGTGAACGCT 1319
Query 1320 CAAGATCTTATTATAAAATTACTGGTGAAGAACCCTAAGAAGAGGTTAGGGAGTCTCAAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CAAGATCTTATTATAAAATTACTGGTGAAGAACCCTAAGAAGAGGTTAGGGAGTCTCAAA 1379
Query 1380 GGCTCTATTGAGATCAAAAGACATGAGTTTTTTGAAGGTGTTAACTGGGCACTAATCAGG 1439
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1380 GGCTCTATTGAGATCAAAAGACATGAGTTTTTTGAAGGTGTTAATTGGGCACTAATCAGG 1439
Query 1440 TCAATAAAGCCACCTTGGGTTCCTAAAGAAGAGACTAGTCACAAGACTAAAGGTGATAAT 1499
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TCGATAAAGCCACCTTGGGTTCCTAAAGAAGAGACTAGTCACAAGACTAAAGGTGATAAT 1499
Query 1500 CGCAGCGTTAATTATTATCTTCCACCAAGGTTTATGATGAGTAGGAAAGAAAGAAATGAG 1559
|||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 1500 CGCAGCGTCAATTATTATCTGCCACCAAGGTTTATGATGAGTAGGAAGGAAAGAGATGAG 1559
Query 1560 CCTTACCATGTGTCTAATTATTTTGATTATTTTTAACTTTAGGTTACATTTAAACAGATT 1619
|||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1560 CCTTACCATGTGGCTAATCATTTTGATTATTTTTAACTTTAGGTTATATTCCAACAAATT 1619
Query 1620 AACAGttttttttt 1633
||| |||||||||
Sbjct 1620 AACT-TTTTTTTTT 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5