BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26710.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932970 jgi|Araly1|932970|scaffold_400958.1 2741 0.0
> Ahg932970 jgi|Araly1|932970|scaffold_400958.1
Length=1652
Score = 2741 bits (1484), Expect = 0.0
Identities = 1599/1655 (97%), Gaps = 5/1655 (0%)
Strand=Plus/Plus
Query 142 GACCAAAGAAGAAAACTTTAGCTCTCCTTTTTGTGTTTTCTCTCTTTTCTTTGTTGGTGT 201
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |
Sbjct 1 GACCAAAGAAGAAAACTTTAGCTCTCCTTTTTGTGTTTTCTCTC-TTTCTTTTTTGTTTT 59
Query 202 TCCGACAATGGAGGAAGAAAGTAGCAGCTGGTTCATTCCAAAGGTTCTTGTTCTGTCTGT 261
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 TCCGACAATGGAGGAAGAAAGTAGCAGCTGGTTCATTCCAAAGGTTCTTGTTTTGTCTGT 119
Query 262 AATCTTAAGTCTTGTAATAGTGAAGGGTATGTCTCTGTTATGGTGGAGACCAAGAAAGAT 321
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 AATCTTAAGTCTTGTAATAGTGAAGGGTATGTCTCTGTTATGGTGGAGATCAAGAAAGAT 179
Query 322 TGAAGAACATTTCTCTAAACAAGGAATTCGAGGTCCTCCTTATCATTTCTTCATCGGAAA 381
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAAGAACATTTCTCAAAACAAGGAATTCGAGGTCCTCCTTATCATTTCTTCATCGGAAA 239
Query 382 TGTTAAAGAACTTGTTGGAATGATGCTTAAAGCTTCTTCTCATCCTATGCCTTTCTCTCA 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTAAAGAACTTGTTGGAATGATGCTTAAAGCTTCTTCTCATCCTATGCCTTTCTCTCA 299
Query 442 CAATATTCTTCCTAGAGTTCTCTCTTTTTACCATCACTGGAGAAAAATCTACGGTGCTAC 501
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 CAATATTCTTCCTAGAGTTCTCTCTTTTTACCATCACTGGAGAAAAATCTATGGTGCTAC 359
Query 502 ATTTCTGGTTTGGTTCGGTCCAACTTTCCGGTTAACGGTAGCCGATCCTGATTTGATCAG 561
||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 360 ATTTCTGGTCTGGTTCGGTCCAACTTTCCGGTTAACAGTAGCCGATCCCGATTTGATCCG 419
Query 562 AGAGATCTTCTCTAAGTCTGAGTTCTACGAGAAGAATGAAGCTCACCCTTTGGTTAAACA 621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AGAGATCTTCTCTAAGTCTGAGTTCTACGAGAAAAATGAAGCTCACCCTTTGGTTAAACA 479
Query 622 ACTTGAAGGCGATGGACTACTTAGTCTCAAAGGTGAAAAATGGGCTCATCATCGAAAAAT 681
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GCTTGAAGGCGATGGACTTCTTAGTCTCAAAGGCGAAAAATGGGCTCATCATCGAAAAAT 539
Query 682 CATTAGCCCTACTTTTCATATGGAGAATCTTAAGTTGCTTGTACCAGTTGTGTTGAAGAG 741
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CATTAGCCCTACTTTTCATCTGGAGAATCTTAAGTTGCTTGTACCAGTGGTGTTGAAGAG 599
Query 742 TGTGACTGATATGGTGGATAAATGGTCCGATAAGTTATCAGAAAACGGTGAAGTTGAGGT 801
|||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct 600 TGTGACTGATATGGTGGATAAATGGTCCGAGAAATTATCGGAAAATGGTGAAGTTGAGGT 659
Query 802 AGATGTCTATGAGTGGTTTCAGATTTTGACTGAAGATGTTATTAGTAGAACAGCTTTTGG 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATGTCTATGAGTGGTTTCAGATTTTGACTGAAGATGTTATTAGTAGAACAGCTTTTGG 719
Query 862 AAGTAGCTATGAAGATGGTCGAGCAG-TTTTTCGACTTCAAGCTCAACAAATGCTTCTTT 920
||||||||| |||||||| || || | |||||||||||||||||||||||||||||||||
Sbjct 720 AAGTAGCTACGAAGATGGCCGCGC-GATTTTTCGACTTCAAGCTCAACAAATGCTTCTTT 778
Query 921 GTGCTGAAGCTTTTCAAAAAGTCTTCATTCCTGGCTATAGATTTTTTCCGACAAGAGGGA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGCTGAAGCTTTTCAAAAAGTCTTCATTCCTGGCTATAGATTTTTTCCGACAAGAGGGA 838
Query 981 ATTTGAAGTCTTGGAAGTTAGACAAGGAGATAAGGAAGTCGTTGTTGAAGCTGATAGAGC 1040
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 839 ATTTGAAGTCTTGGAAGTTAGACAAGGAGATAAGGAAGTCATTGTTGAAGTTGATAGAGC 898
Query 1041 GGCGGAGACAAAACGCTATAGATGGAGAAGGGGAAGAATGTAAGGAGCCGGCGGCGAAGG 1100
|||||||||| |||||| |||| ||||| || ||||||||||||||||||||||||||||
Sbjct 899 GGCGGAGACAGAACGCTGTAGAGGGAGACGGCGAAGAATGTAAGGAGCCGGCGGCGAAGG 958
Query 1101 ATTTGTTGGGATTAATGATTCAGGCAAAGAATGTGACGGTTCAGGACATTGTGGAGGAGT 1160
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATTTATTGGGATTAATGATTCAGGCAAAGAATGTGACGGTTCAGGACATTGTGGAGGAGT 1018
Query 1161 GTAAAAGCTTTTTCTTCGCCGGGAAACAGACAACTTCTAATCTGCTGACGTGGACGACCA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTAAAAGCTTTTTCTTCGCCGGGAAACAGACAACTTCTAATCTGCTGACGTGGACGACCA 1078
Query 1221 TCTTGCTATCCATGCACCCGGAGTGGCAGGCCAAAGCACGTGATGAGGTCCTCAGGGTCT 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCTTGCTATCCATGCACCCGGAGTGGCAGGCCAAAGCACGTGATGAGGTCCTCAGGGTCT 1138
Query 1281 GCGGCTCACGTGATGTCCCTACCAAGGACCATGTCGTTAAGCTTAAAACGTTGAGTATGA 1340
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTGGCTCACGTGATGTCCCTACCAAGGACCATGTCGTTAAGCTTAAAACGTTGAGTATGA 1198
Query 1341 TCTTGAACGAGTCTTTAAGGTTGTATCCACCAATAGTAGCTACGATTCGACGCGCTAAAT 1400
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1199 TCTTGAACGAGTCTTTAAGGTTGTATCCACCAATAGTTGCTACAATTCGACGCGCTAAAT 1258
Query 1401 CGGATGTGAAGCTAGGAGGGTACAAAATCCCATGTGGCACGGAGCTTCTAATCCCAATCA 1460
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1259 CGGATGTGAAGCTAGGAGGGTACAAAATTCCATGTGGCACGGAGCTTCTAATACCAATCA 1318
Query 1461 TAGCGGTCCATCATGACCAAGCCATTTGGGGTAATGACGTGAACGAATTCAATCCAGCTC 1520
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGCGGTTCATCATGACCAAGCCATTTGGGGTAATGACGTGAACGAATTCAATCCAGCTC 1378
Query 1521 GGTTTGCGGATGGAGTGCCGCGTGCTGCCAAACACCCCGTTGGCTTCATACCGTTTGGCC 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGTTTGCGGATGGAGTGCCGCGTGCTGCCAAACACCCCGTTGGCTTCATACCGTTTGGCC 1438
Query 1581 TCGGAGTTCGTACATGCATTGGTCAGAATCTTGCTATACTTCAGGCCAAATTGACACTCG 1640
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 TCGGAGTTCGAACATGCATTGGTCAGAATCTTGCTATACTTCAGGCCAAATTGACACTGG 1498
Query 1641 CTGTAATGATCCAACGCTTCACCTTTCACTTGGCTCCTACTTATCAGCATGCACCTACCG 1700
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1499 CGGTAATGATCCAACGTTTCACCTTTCACTTGGCTCCTACTTACCAGCATGCACCAACCG 1558
Query 1701 TCCTTATGTTGCTTTATCCTCAACATGGTGCACCAATCACCTTCCGGAGATTGACCAATC 1760
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCCTAATGTTGCTTTATCCTCAACATGGTGCACCAATCACCTTCCGGAGATTGACCAATC 1618
Query 1761 ATGAGGATTGAT-GAAAGATCTTCAACGGTCAAAA 1794
|||||||| | | ||| |||| |||| |||| |||
Sbjct 1619 ATGAGGATCGCTAGAA-GATCATCAAAGGTCTAAA 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5