BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26720.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933650 jgi|Araly1|933650|scaffold_401638.1 544 4e-154
Ahg900732 jgi|Araly1|900732|Al_scaffold_0004_1382 435 2e-121
> Ahg933650 jgi|Araly1|933650|scaffold_401638.1
Length=603
Score = 544 bits (294), Expect = 4e-154
Identities = 390/436 (89%), Gaps = 7/436 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTGATTAAGAACAA---CATCTTTTTCACTTCTTTGCTGATTTTTGTGACTCTT 57
|||||||||||||||||||| | ||||||||||||| ||| ||||| |||| ||||||
Sbjct 22 ATGGCTTTGATTAAGAACAACGTCGTCTTTTTCACTTCATTGTTGATTCTTGTAACTCTT 81
Query 58 TTTGGAGTTGCCGTTGGAGGAACCGTTCACAAAGTCGGCAACACGAAAGGATGGACGATG 117
|| || ||| |||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 82 TTAGGTGTTACCGTTGGAGGAACCGTTCACAAAGTCGGTGACACTAAAGGGTGGACGATG 141
Query 118 ATTGGAGGCGATTATGAGGCTTGGGCTTCTTCAAGAGTTTTTCAAGTCGGAGACACTCTG 177
|||| |||||| |||| |||||||||||||| | ||||||||| ||||| || ||
Sbjct 142 GCGGGAGTCGATTACGAGGATTGGGCTTCTTCAAAAACTTTTCAAGTGGGAGATTCTTTG 201
Query 178 GTCTTCGCATACAACAAAGATTACCACGACGTCACGGAAGTCACTCACAATGATTTCGAG 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 202 GTCTTCGCATACAACAAAGATTTCCACGACGTCACGGAAGTCACTCACAATGATTTCGAG 261
Query 238 ATGTGTGAATCGTCTAAACCGC-TAAGGAGATACAAGACCGGGTCTGACTCAATCAGTCT 296
||||||||||||||||||| | ||| ||||||||| |||||||| ||||||||||||||
Sbjct 262 CTGTGTGAATCGTCTAAACCACTTAA-GAGATACAAAACCGGGTCCGACTCAATCAGTCT 320
Query 297 AACCAAACCGGGACTCCAACACTTCATATGCGGAGTTCCTGGACACTGCAAGA-AGGGAC 355
|||||||||||||||||||||||||||||||||||||||||| || ||||| | |||| |
Sbjct 321 AACCAAACCGGGACTCCAACACTTCATATGCGGAGTTCCTGGTCATTGCAACATAGGG-C 379
Query 356 AAAAGCTTCAAATCCATGTCTTACCGGCCTCATTGGGTCACGTCGCTGTTCCGGTTCCTG 415
||||||||| |||||||||||||||||| || ||||||| |||||||| |||||||||||
Sbjct 380 AAAAGCTTCTAATCCATGTCTTACCGGCTTCGTTGGGTCCCGTCGCTGCTCCGGTTCCTG 439
Query 416 GACCGGTCCGATCACA 431
|||| |||||||||||
Sbjct 440 GACCTGTCCGATCACA 455
> Ahg900732 jgi|Araly1|900732|Al_scaffold_0004_1382
Length=576
Score = 435 bits (235), Expect = 2e-121
Identities = 383/453 (85%), Gaps = 15/453 (3%)
Strand=Plus/Plus
Query 23 TCTT-TTTCACTTCTTTGCTGATTTTTGTGACT-CTTTTTGGAGTTGCCGTTGGAGGAAC 80
|||| ||| ||||||||| | ||| |||| | | |||| ||||||| || ||||||||||
Sbjct 5 TCTTCTTT-ACTTCTTTGATAATTCTTGT-AGTACTTTGTGGAGTTTCCATTGGAGGAAC 62
Query 81 CGTTCACAAAGTCGGCAAC-ACGAAAGGATGGACGATGATTGGAG-G-C---GATTATGA 134
||||||||||||||| || || | ||||||||||| | | ||| | | |||| ||
Sbjct 63 CGTTCACAAAGTCGGTGACTCCG-ACGGATGGACGAT-AAT-GAGCGTCAATAATTACGA 119
Query 135 GGCTTGGGCTTCTTCAAGAGTTTTTCAAGTCGGAGACACTCTGGTCTTCGCATACAACAA 194
| ||| | ||||||| | ||||||||||| |||| || |||||||| |||||||||
Sbjct 120 CGAATGGTCATCTTCAAAAACTTTTCAAGTCGAAGACTCTTTGGTCTTCAAATACAACAA 179
Query 195 AGATTACCACGACGTCACGGAAGTCACTCACAATGATTTCGAGATGTGTGAATCGTCTAA 254
||||| |||||||||||| ||||||||||||||||||||| || |||||||| | |||||
Sbjct 180 AGATTTCCACGACGTCACTGAAGTCACTCACAATGATTTCAAGTTGTGTGAACCATCTAA 239
Query 255 ACCGCTAAGGAGATACAAGACCGGGTCTGACTCAATCAGTCTAACCAAACCGGGACTCCA 314
|||||||| ||||||| |||||||||||||| | |||| |||||||||||||||||||||
Sbjct 240 ACCGCTAACGAGATACGAGACCGGGTCTGACACCATCATTCTAACCAAACCGGGACTCCA 299
Query 315 ACACTTCATATGCGGAGTTCCTGGACACTGCAAGAAGGGACAAAAGCTTCAAATCCATGT 374
|||||||||||||||| ||||||| |||||| | | ||| ||||||||||||||||||||
Sbjct 300 ACACTTCATATGCGGATTTCCTGGTCACTGCGACATGGGCCAAAAGCTTCAAATCCATGT 359
Query 375 CTTACCGGCCTCATTGGGTCAC-GTCGCTGTTCCGGTTCCTGGACCGGTCCGATCACAAA 433
||||| ||||| ||||| | | ||||||| |||||||||| |||| |||||||||| ||
Sbjct 360 ATTACCAGCCTCGTTGGGAC-CTGTCGCTGCTCCGGTTCCTAGACCTGTCCGATCACCAA 418
Query 434 GCTCTTCTTCGTCTCCTTCACCGTCCCCATTGG 466
|||||| |||||||||||||||||| || ||||
Sbjct 419 GCTCTTTTTCGTCTCCTTCACCGTCTCCGTTGG 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5