BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26730.1
Length=2546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481544 jgi|Araly1|481544|fgenesh2_kg.4__604__AT2G26730.1 3790 0.0
> Ahg481544 jgi|Araly1|481544|fgenesh2_kg.4__604__AT2G26730.1
Length=2463
Score = 3790 bits (2052), Expect = 0.0
Identities = 2344/2481 (94%), Gaps = 36/2481 (1%)
Strand=Plus/Plus
Query 1 AAAGACTTCACGATCCcacacctccacacacattgactcacacaca-----cacacTTCT 55
|||||||||||||||||||||||||||||| ||||||||||||||| | | |||||
Sbjct 1 AAAGACTTCACGATCCCACACCTCCACACATATTGACTCACACACATCCCTCTCTCTTCT 60
Query 56 CTCTCCAAGTTCAGAAAAACCAAAAATGGGTTCTTGTCGGAAAACCACTTCTGGTTTTCA 115
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCCAAGTCCAG-AAAACCAAAAATGGGTTCTTGTCGGAAAACCACTTCTGGTTTTCA 119
Query 116 GCAAACCCACTTCTTGTAATAAAACAGACAAAACTAGAAAGAAGCAAAAAAGCTTCGttt 175
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 120 GCAAACCCA---CTTGTAATAAAACAGACAAAACTAGAAAGAAGC--AAAAGCTTC-TTT 173
Query 176 tttttttC-T-CTT-TCTCCaaaaaaaaaaacccccccAAATATGGCGTCAATTTCATGG 232
|||||||| | || ||| | |||||||| |||||||| ||||| ||||||||||||
Sbjct 174 TTTTTTTCTTAGTTATCTTCTCCAAAAAAAA--CCCCCAAA-ATGGCATCAATTTCATGG 230
Query 233 GTTTTGAATTCTCTATTCTCGATAT-TGCTACTGACTCAGCGAGTCAACTCGGAATCAAC 291
||||||||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||
Sbjct 231 GTTTTGAATTCTCTACTCTCGAT-TCTGCTATTGACTCAGCGAGTCAACTCGGAGTCAAC 289
Query 292 CGCAGAAAAACAAGCACTCCTCACTTTCCTTCAACAAATACCTCACGAGAATCGTCTTCA 351
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGCCGAAAAACAAGCACTCCTCACTTTCCTTCAACAAATACCTCACGAGAATCGTCTTCA 349
Query 352 ATGGAACGAGTCAGACTCAGCTTGTAACTGGGTCGGAGTCGAATGCAACTCAAACCAATC 411
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 350 ATGGAACGAGTCAGACTCAGCTTGTAACTGGGTCGGAGTCGAATGTAACTCGAACCAATC 409
Query 412 TTCAATCCACTCTCTCCGGTTACCAGGAACCGGTTTAGTCGGTCAGATCCCATCAGGCTC 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CTCAATCCACTCTCTCCGGTTACCAGGAACCGGTTTAGTCGGTCAGATCCCATCAGGCTC 469
Query 472 CTTAGGTCGACTCACTGAGCTCCGAGTTCTCAGTCTTCGTTCTAATCGTCTCTCTGGTCA 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GTTAGGTCGACTCACTGAGCTCCGAGTTCTCAGTCTTCGTTCTAATCGTCTCTCTGGTCA 529
Query 532 GATCCCTTCAGATTTCTCAAATCTTACTCATCTGCGAAGCTTATATCTTCAACACAACGA 591
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 530 GATCCCTTCAGATTTCTCAAATCTCACTCATCTCCGAAGCTTATATCTTCAACACAACGA 589
Query 592 ATTCTCCGGCGAGTTTCCGACGAGTTTTACTCAGTTAAACAACTTGATTCGTCTTGATAT 651
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 590 ATTCTCCGGCGAGTTTCCGGCGAGTATTACTCAGTTAAACAACTTGATTCGTCTTGATAT 649
Query 652 CTCATCTAACAACTTCACTGGTTCGATACCTTTCTCAGTCAATAATCTCACTCACTTGAC 711
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 650 CTCATCTAACAACTTCACTGGTTCGATTCCTTTCTCAGTCAATAATCTCACTCACTTGAC 709
Query 712 TGGTTTGTTTCTCGGTAACAATGGTTTCTCAGGGAATCTTCCTAGTATTAGTCTCGG-TT 770
|||||||||||| |||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 710 TGGTTTGTTTCTTGGTAACAATGGTTTCTCAGGGAATCTACCAAGTATTAGTCT-GGATT 768
Query 771 TAGTCGATTTCAATGTCTCTAACAACAATCTAAACGGTTCGATTCCGTCTTCATTATCAA 830
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 769 TAGTCGATTTCAATGTCTCTAACAACAATCTAAATGGTTCGATTCCGACTTCATTGTCAA 828
Query 831 GATTCTCAGCTGAATCGTTTACTGGAAATGTAGATCTCTGTGGTGGTCCGTTAAAGCCTT 890
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 829 GATTCTCAGCTGAATCGTTTACCGGGAATGTAGATCTCTGTGGTGGTCCGTTAAAGCCTT 888
Query 891 GTAAATCGTTTTTTGTGTCTCCCTCGCCGTCTCCGTCGTTGATTAATCCTTCTAATCGTT 950
|||||||||| ||||||||||| ||||| |||||||||| ||||| |||| |||| ||||
Sbjct 889 GTAAATCGTTCTTTGTGTCTCCGTCGCCATCTCCGTCGTCGATTATTCCTGCTAAACGTT 948
Query 951 TATCCAGCAAGAAATCAAAGCTTTCGAAAGCTGCGATTGTCGCGATAATCGTCGCTAGCG 1010
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 949 TATCTGGCAAGAACTCAAAGCTTTCGAAAGCTGCGATTGTCGCAATAATCGTCGCTAGCG 1008
Query 1011 CGCTCGTTGCGCTTCTTTTGCTAGCTCTGCTTTTGTTCTTGTGTTTAAGAAAAAGAAGAG 1070
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1009 CGCTAGTGGCGCTTCTTTTGCTAGCTCTGCTTTTGTTCTTATGTTTAAGAAAAAGAAGAG 1068
Query 1071 GAAGTAATGAGGCGAGGACGAAGCAGCCGAAACCGGCGGGAGTAGCTACAAGGAATGTGG 1130
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1069 GAAGTAAAGATGCGAGGACGAAGCAGCCGAAACCGGCGGGAGTAGCCACAAGGAATGTGG 1128
Query 1131 ATCTTCCACCGGGTGCTTCGTCCTCGAAAGAGGAAGTAACGGGGACATCATCGGGTATGG 1190
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ATCTTCCGCCGGGAGCTTCGTCCTCGAAAGAGGAAGTAACGGGGACATCATCGGGTATGG 1188
Query 1191 GAGGTGAAACAGAGAGGAATAAGCTTGTTTTCACTGAAGGAGGAGTGTATAGTTTTGATT 1250
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1189 GAGGTGAAACAGAGAGGAATAAACTTGTTTTCACTGAAGGAGGAGTGTATAGTTTCGATT 1248
Query 1251 TGGAAGATTTGCTTAGAGCTTCTGCTGAGGTTTTAGGTAAAGGAAGTGTTGGAACATCGT 1310
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct 1249 TGGAAGATTTGCTTAGAGCTTCAGCTGAAGTTTTAGGTAAAGGAAGTGTAGGAACTTCGT 1308
Query 1311 ATAAGGCGGTGTTAGAGGAAGGTACCACGGTTGTTGTTAAGCGGCTTAAAGATGTAATGG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATAAGGCGGTGTTAGAGGAAGGTACCACGGTTGTTGTTAAGCGGCTTAAAGATGTAATGG 1368
Query 1371 CGTCTAAGAAAGAGTTCGAAACACAAATGGAAGTTGTTGGTAAAATCAAACATCCAAATG 1430
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CGTCGAAGAAAGAGTTCGAAACACAAATGGAAGTTGTTGGTAAAATCAAACATCCAAATG 1428
Query 1431 TTATTCCATTAAGAGCTTATTACTACTCTAAAGATGAGAAACTTCTCGTTTTCGATTTCA 1490
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1429 TGATTCCATTGAGAGCTTATTATTACTCTAAAGATGAGAAACTTCTCGTTTTCGATTTCA 1488
Query 1491 TGCCTACCGGAAGCTTATCTGCTCTTCTCCACGGGAGCCGTGGATCAGGGCGAACTCCGT 1550
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 TGCCTACCGGAAGCTTATCTGCTCTTCTTCACGGGAGCCGTGGATCAGGGCGAACTCCGT 1548
Query 1551 TAGATTGGGATAACCGTATGAGAATAGCGATAACTGCAGCGAGAGGTTTGGCGCATCTTC 1610
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1549 TAGATTGGGATAACCGGATGAGAATAGCGATAACTGCTGCGAGAGGTTTGGCCCATCTTC 1608
Query 1611 ACGTTTCAGCCAAATTGGTACATGGAAACATTAAAGCTTCAAACATCCTCCTACACCCAA 1670
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1609 ACGTTTCAGCCAAATTGGTACATGGAAACATTAAAGCTTCAAACATCCTACTACACCCAA 1668
Query 1671 ACCAAGACACTTGCGTCTCTGATTATGGACTGAATCAACTGTTCAGTAACTCGAGTCCAC 1730
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | |||||
Sbjct 1669 ACCAAGACACATGCGTCTCTGACTATGGACTGAATCAACTATTCAGTAACTCTACTCCAC 1728
Query 1731 CAAACCGTTTGGCGGGTTATCATGCTCCTGAAGTTCTCGAGACACGGAAAGTAACTTTTA 1790
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1729 CAAACCGTTTGGCGGGTTATCATGCTCCTGAAGTTCTCGAGACTCGGAAAGTAACTTTCA 1788
Query 1791 AATCGGATGTGTACAGTTTCGGGGTGTTGCTTCTTGAACTGTTAACAGGAAAATCACCAA 1850
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||
Sbjct 1789 AATCGGATGTGTACAGTTTCGGGGTGTTACTGCTCGAACTATTGACAGGTAAATCGCCAA 1848
Query 1851 ACCAGGCATCACTTGGGGAAGAAGGTATTGATCTACCTCGGTGGGTACTCTCCGTGGTTC 1910
|||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 1849 ACCAGGCATCTCTTGGTGAAGAAGGCATTGATCTACCCCGATGGGTACTCTCCGTGGTCC 1908
Query 1911 GAGAAGAATGGACTGCTGAAGTATTTGACGTTGAGCTGATGAGGTACCACAACATAGAGG 1970
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 GGGAAGAATGGACTGCTGAAGTATTTGACGTTGAGCTGATGAGGTACCACAACATAGAGG 1968
Query 1971 AAGAGATGGTTCAGCTTCTTCAAATCGCAATGGCTTGTGTATCAACGGTTCCTGATCAAC 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 AAGAGATGGTTCAGCTTCTTCAAATCGCAATGGCTTGTGTATCAACGGTTCCTGATCAAC 2028
Query 2031 GACCAGTAATGCAAGAAGTACTAAGAATGATCGAAGATGTCAACAGAAGTGAGACAACCG 2090
||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 2029 GACCAGTAATGCAAGAAGTGTTAAGAATGATTGAAGATGTGAACAGAAGTGAGACAACCG 2088
Query 2091 ATGACGGGTTAAGACAATCGTCTGATGACCCGTCAAAGGGATCAGAAGGTCAGACTCCTC 2150
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2089 ATGACGGGTTAAGACAATCGTCTGACGACCCGTCAAAGGGATCAGAAGGTCAGACTCCTC 2148
Query 2151 CAGGAGAATCAAGGACGCCACCACGATCAGTCACACCTTAGCAAATGAATGG-AATTGAT 2209
| || ||||||||||| || ||||| |||||||||||||||||||||||||| || ||||
Sbjct 2149 CCGGGGAATCAAGGACACCGCCACGGTCAGTCACACCTTAGCAAATGAATGGGAAGTGAT 2208
Query 2210 TAAGAAGAAAGCAGCTTTAAAGTTTTTCTTGTTTGTGTTCACCtttttttttttCTCCTC 2269
||| |||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||
Sbjct 2209 TAAAAAGAAAGCAGCTTTAA-GTTTTCCTTGTTTGTGTTCAC-TTTTTTTTT--CTCCTC 2264
Query 2270 AAAAGGAGATAAAGAAAGGGATGAGATAAGT-GTGTG--AGGTCTTTGTTAGGTGTGAAG 2326
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2265 AAAAGGAGATAAAGAAAGGGATGAGATAAGTAGTGTGTGAGGTCTTTGTTAGGTGTGAAG 2324
Query 2327 GTAAAGCAAAAAAGACTGGACCATCTCTGCATTTGGACCAACTTCTACAAGATGGCATCT 2386
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2325 GTAAAGCAAAAAAGACTGGACCATCTCTGCATTTGGACCAATTTCTACAAGATGGCATCT 2384
Query 2387 CCCATCTAtttttttttCAGTCTT-CGAGATATTCTAGTGGTTATTATT-TTTT--CTTT 2442
||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 2385 CCCATCTATTTTTTT--CAGTCTTTCGAGATATTCTAGTGGTTATTATTATTTTTTCTTT 2442
Query 2443 TATTTGTATTTGGTGTTTACA 2463
||||||||||| |||||||||
Sbjct 2443 TATTTGTATTTTGTGTTTACA 2463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95987417400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5