BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26740.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481547 jgi|Araly1|481547|fgenesh2_kg.4__607__AT2G26740.1 1533 0.0
Ahg344375 jgi|Araly1|344375|fgenesh1_pg.C_scaffold_4000717 1171 0.0
> Ahg481547 jgi|Araly1|481547|fgenesh2_kg.4__607__AT2G26740.1
Length=1122
Score = 1533 bits (830), Expect = 0.0
Identities = 1002/1084 (92%), Gaps = 16/1084 (1%)
Strand=Plus/Plus
Query 4 ACCACACAAAGTAATTACAATGGAACACAGAAAGGTAAGAGGGAACGGCATAGACATTCA 63
||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1 ACCACACAAAGCAAAAACAATGGAGCACAGAAAGGTGAGAGGGAACGGCATAGACATCCA 60
Query 64 CGTAGCAATCCAAGGTCCCTCCGATGGTCCTATAGTCCTCCTCCTCCATGGTTTCCCTGA 123
||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 61 CGTGGCAATCCAAGGTCCCTCCGATGGTCCGATAGTCCTTCTCCTCCATGGCTTCCCTGA 120
Query 124 GCTTTGGTACTCATGGCGCCACCAGATCCCTGGACTCGCCGCTCGTGGCTACCGTGCCGT 183
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 121 GCTTTGGTACTCATGGCGCCACCAGATCCCCGGACTCGCCGCTTGTGGATACCGTGCCGT 180
Query 184 CGCTCCTGACCTACGTGGTTACGGTGACTCCGATGCTCCCGCTGAGATCTCTTCCTACAC 243
|||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||
Sbjct 181 GGCTCCTGACCTACGTGGTTATGGTGACTCCGACGCTCCGGCGGAGATCTCTTCCTACAC 240
Query 244 ATGCTTCAACATCGTTGGTGACTTAATCGCCGTCATATCCGCCTTAACCGCCTCAGAGGA 303
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 ATGCTTCAACATCGTAGGTGACTTAGTCGCCGTCATATCCGCCTTAACCGCCTCAGAGGA 300
Query 304 TGAGAAGGTCTTTGTGGTTGGACATGATTGGGGAGCTCTCATCGCTTGGTA-TTTATGTC 362
||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 301 TGAGAAGGTGTTTGTGGTTGGACATGACTGGGGAGCTCTCATCGCTTGGTACCTT-TGTC 359
Query 363 TCTTCCGACCAGAT-AGAGTCAAAGCTCTGGTCAACCTCAGTGTTCCGTTCTCTTTCCGG 421
|||||||||||||| || || |||||| |||||||||| ||||||||||||||||||||
Sbjct 360 TCTTCCGACCAGATAAG-GTTAAAGCTTTGGTCAACCTTAGTGTTCCGTTCTCTTTCCGT 418
Query 422 CCAACCGATCCATCGGTGAAGCCCGTTGATCGCATGCGTGCTTTCTACGGCGATGATTAC 481
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCAATGGATCCATCCACAAAGCCCGTTGATCGCATGCGTGCTTTCTACGGCGATGATTAC 478
Query 482 TATATCTGCAGGTTTCAGGAATTTGGAGATGTAGAAGCTGAGATTGCAGAGGTTGGAACA 541
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 479 TATGTCTGCAGGTTTCAGGAAGTTGGAGATATAGAAGCTGAGATTGCAGAGGTTGGAACA 538
Query 542 GAGAGAGTCATGAAGA-GACTACTCACTTATAGAACTCCTGGACCGGTAATTATCCCGAA 600
|||||||||||||||| || |||||||||||||||||||||||||| | ||||| |||||
Sbjct 539 GAGAGAGTCATGAAGAGGA-TACTCACTTATAGAACTCCTGGACCGATTATTATACCGAA 597
Query 601 GGACAAAAGTTTTTGGGGATCCAAAGGCGAAACTATACCACTCCCGTCTTGGCTAACGGA 660
||||||| |||||||||||||||| ||||| |||||| || || |||||| |||||||
Sbjct 598 AAACAAAAGCTTTTGGGGATCCAAAGACGAAAGTATACCTCTACCTTCTTGGGTAACGGA 657
Query 661 GGAAGATGTTGCTTACTTCGTCAGCAAGTTTGAAGAGAAAGGCTTCTCTGGTCCAGTCAA 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAAGATGTTACTTACTTCGTCAGCAAGTTTGAAGAGAAAGGCTTCTCTGGTCCAGTCAA 717
Query 721 TTACTACCGTAACTTCAACAGGAACAATGAGTTGTTGGGTCCATGGGTGGGAAGCAAAAT 780
|| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 TTTCTACCGTAACTTTAACCGGAACAATGAGTTGTTGGGTCCATGGGTGGGGAGCAAAAT 777
Query 781 CCAGGTTCCTACAAAGTTTGTGATAGGGGAGCTTGATC-TGGTCTACTATATGCCTGGTG 839
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 778 CCAGGTTCCTACAAAGTTTGTGATAGGGGAGCTTGA-CTTGGTCTACTATATGCCTGGTG 836
Query 840 TGAAGGAATATATACATGGTCCCCAGTTTAAGGAAGATGTGCCTTTGCTTGAAGAGCCTG 899
|||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 837 TGAAGGAATACATAAATGGTCCCAAGTTTAAAGAAGATGTGCCTTTGCTTGAAGAGCCTG 896
Query 900 TGGTCATGGAAGGAGTGGCTCACTTCATTAACCAAGAAAAGCCTCAGGAGATTCTCCAAA 959
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 897 TGGTCATGGAAGGAGTGGCTCACTTCATTAACCAAGAAAAGCCTCAAGAGATTCTCCAAA 956
Query 960 TTATCCTTGATTTCATCTCCAAATTCTAATGTTGCTTTCCCTTAAATTACTCTTTTAATC 1019
|||||||||||||||||||||||||||||| ||| |||| ||||||| | |||| |||
Sbjct 957 TTATCCTTGATTTCATCTCCAAATTCTAATCTTGTTTTCTCTTAAATCATTCTTGTAA-- 1014
Query 1020 AAGTTCCATAATAAGTTGAATTATGAGGATATACATCCTCATGTATG--GTTGTATCATC 1077
||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 1015 --GTTCCATAATAAGTTGAATTATGAGGATA--CATCCTCATGTATTTCGTTATATCATC 1070
Query 1078 CTAT 1081
||||
Sbjct 1071 CTAT 1074
> Ahg344375 jgi|Araly1|344375|fgenesh1_pg.C_scaffold_4000717
Length=903
Score = 1171 bits (634), Expect = 0.0
Identities = 751/806 (93%), Gaps = 14/806 (2%)
Strand=Plus/Plus
Query 187 TCCTGACCTACGTGGTTACGGTGACTCCGATGCTCCCGCTGAGATCTCTTCCTACACATG 246
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 108 TCCTGACCTACGTGGTTACGGTGATTCCGATGCTCCCGCTGAGATCTCTTCCTACACATG 167
Query 247 CTTCAACATCGTTGGTGACTTAATCGCCGTCATATCCGCCTTAACCGCCTCA-GAGGATG 305
|||||||||||| ||||||||| |||||||||||||||||||||||| | || | |
Sbjct 168 CTTCAACATCGTAGGTGACTTAGTCGCCGTCATATCCGCCTTAACCG----AGGATAAGG 223
Query 306 AGAAGGTCTTTGTGGTTGGACATGATTGGGGAGCTCTCATCGCTTGGTA-TTTATGTCTC 364
||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 224 AGAAGGTGTTTGTGGTTGGACATGACTGGGGAGCTCTCATCGCTTGGTACCTT-TGTCTC 282
Query 365 TTCCGACCAGAT-AGAGTCAAAGCTCTGGTCAACCTCAGTGTTCCGTTCTCTTTCCGGCC 423
|||||||||||| || || |||||| || ||||||| ||||| ||| | || || || ||
Sbjct 283 TTCCGACCAGATAAG-GTTAAAGCTTTGATCAACCTTAGTGTCCCG-T-TC-TTACGTCC 338
Query 424 AACCGATCCATCGGTGAAGCCCGTTGATCGCATGCGTGCTTTCTACGGCGATGATTACTA 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 AACCGATCCATCCACGAAGCCCGTTGATCGCATGCGTGCTTTCTACGGCGATGATTACTA 398
Query 484 TATCTGCAGGTTTCAGGAATTTGGAGATGTAGAAGCTGAGATTGCAGAGGTTGGAACAGA 543
| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 399 TGTCTGCAGGTTTCAGGAAGTTGGAGTTATAGAAGCTGAGATTGCAGAGGTTGGAACAGA 458
Query 544 GAGAGTCATGAAGAGACTACTCACTTATAGAACTCCTGGACCGGTAATTATCCCGAAGGA 603
||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 459 GAGAGTCATGAAGAGACTACTCACTTATAGAACTCATGGACCGGTTATTATACCGAAGGA 518
Query 604 CAAAAGTTTTTGGGGATCCAAAGGCGAAACTATACCACTCCCGT-CTTGGCTAACGGAGG 662
|||||| ||||||||||||||||||||||||||||| || || | |||||||||| ||||
Sbjct 519 CAAAAGCTTTTGGGGATCCAAAGGCGAAACTATACCTCTACC-TACTTGGCTAACTGAGG 577
Query 663 AAGATGTTGCTTACTTCGTCAGCAAGTTTGAAGAGAAAGGCTTCTCTGGTCCAGTCAATT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 AAGATGTTGCTTACTTCGTCAGCAAGTTTGAAGAGAAAGGCTTCTCTGGTCCAGTCAATT 637
Query 723 ACTACCGTAACTTCAACAGGAACAATGAGTTGTTGGGTCCATGGGTGGGAAGCAAAATCC 782
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ACTACCGTAACTTTAACCGGAACAATGAGTTGTTGGGTCCATGGGTGGGAAGCAAAATCC 697
Query 783 AGGTTCCTACAAAGTTTGTGATAGGGGAGCTTGATCTGGTCTACTATATGCCTGGTGTGA 842
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 698 AGGTTCCTACAAAGTTTGTGATAGGGGAGCTTGATTTGGTCTACGCTATGCCTGGTGTCA 757
Query 843 AGGAATATATACATGGTCCCCAGTTTAAGGAAGATGTGCCTTTGCTTGAAGAGCCTGTGG 902
| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 758 AAGAATATATACATGGTCCCAAGTTTAAGGAAGATGTGCCTTTTCTTGAAGAGCCTGTGG 817
Query 903 TCATGGAAGGAGTGGCTCACTTCATTAACCAAGAAAAGCCTCAGGAGATTCTCCAAATTA 962
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 818 TCATGGAAGGAGTGGCTCACTTCATTAACCAAGAGAAGCCTCAAGAGATTCTCCAAATTA 877
Query 963 TCCTTGATTTCATCTCCAAATTCTAA 988
||||||||||||||||||||||||||
Sbjct 878 TCCTTGATTTCATCTCCAAATTCTAA 903
Score = 148 bits (80), Expect = 7e-35
Identities = 100/109 (92%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 23 ATGGAACACA-GAAAGGTAAGAGGGAACGGCATAGACATTCACGTAGCAATCCAAGGTCC 81
||||| |||| | ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 ATGGAGCACATG-AAGGTAAGAGGGAACGGCATAGATATCCACGTAGCAATCCAAGGTCC 59
Query 82 CTCCGATGGTCCTATAGTCCTCCTCCTCCATGG-TTTCCCTGAGCTTTG 129
|||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 60 CTCCGATGGTCCGATAGTCCTTCTCCTCCATGGCTTTCC-TGAGCTTTG 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5