BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26760.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932988 jgi|Araly1|932988|scaffold_400976.1 1703 0.0
Ahg932989 jgi|Araly1|932989|scaffold_400977.1 383 2e-105
> Ahg932988 jgi|Araly1|932988|scaffold_400976.1
Length=1198
Score = 1703 bits (922), Expect = 0.0
Identities = 1117/1209 (92%), Gaps = 21/1209 (2%)
Strand=Plus/Plus
Query 203 AACAACAAGGTTCAGATATTATGGCGTCTTCTAGAGTCTCTGATCTTCCTCATCAACGTG 262
||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 4 AACAACAAGGTTCAG--A-TATGGCGTCGTCTAGAGTCTCTGATCTTCCTCATCAACGTG 60
Query 263 GAATCGCAGGTGAAATCAAACCGAAGAATGTTGCAGGACATGGAAGACAAAACCGGAAAG 322
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 61 GAATCGCAGGTGAAATCAAACCGAGGAATGTTGCGGGACATGGAAGACAAAACCGAAAAG 120
Query 323 TTCTTGGAGACATTGGTAATCTTGTCACTGGTCGTGATGTTGCAA-CAGGAAAGGATGTT 381
|||||||||||||||||||||| |||||||| |||||||||| || || |||||||| ||
Sbjct 121 TTCTTGGAGACATTGGTAATCTCGTCACTGGCCGTGATGTTGTAACCA-GAAAGGATATT 179
Query 382 GCGAAGAAGGCGAAACAACCACAGCAGCAGACAAAAGCTGAGGTTATTGTCATTAGCCCT 441
|||||||||| | || || | |||||||||||| |||||||| ||||||||||||
Sbjct 180 GCGAAGAAGGTG----AA--AC--C-GCAGACAAAAGCCGAGGTTATAGTCATTAGCCCT 230
Query 442 GATGAAAACGAG-AAA--TGCAAACCACATTTTAGCAGAAGAACTCATATAAGAGGAACC 498
|| ||||||||| ||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 231 GACGAAAACGAGAAAAGCTGTAAACCACATTTCAGCAGAAGAACTCATATTCGAGGAACC 290
Query 499 AAGACTTTTACCGCAACCTTAAGAGCTCGAAGCAAGGCTGCGAGTGGACTGAAGGATGCT 558
|| ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 291 AAAACTTTTACCGCAACCTTAAGAGCCCGAAGCAAGGCTGCGAATGGAATGAAGGATGCT 350
Query 559 GTGATCGACATTGATGCTGTGGATGCTAACAATGAACTGGCTGCTGTGGAATACGTAGAG 618
||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 351 GTGATTGACATTGATGCTGCCGATGCTAACAACGAACTGGCTGCTGTGGAATATGTAGAT 410
Query 619 GACATCTTCAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGA 678
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct 411 GACATCTTCAAGTTTTATAGGACTGTAGAAGAGGAAGGAGGAATCAAAGACTATATTGGA 470
Query 679 TCACAACCTGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTT 738
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 471 TCACAGCCTGAGATAAACGAGAAGATGAGATCGATTCTGATCGATTGGCTTGTAGATGTT 530
Query 739 CACAGGAAGTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGG 798
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 531 CACAGGAAGTTTGAGTTGATGCCAGAGACGCTTTACCTCACCATTAACCTCGTTGATCGG 590
Query 799 TTTCTATCTTTGACAATGGTTCATAGAAGAGAGCTTCAGCTGTTGGGACTAGGTGCTATG 858
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 591 TTTCTATCTTTGGCAATGGTTCCTAGAAGAGAGCTTCAACTGTTGGGACTAGGCGCTATG 650
Query 859 CTTATAGCTTGCAAGTATGAGGAGATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATT 918
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 651 CTTATAGCTTGCAAGTATGAAGATATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATT 710
Query 919 TCGGACAATGCCTATAACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAA 978
||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 711 TCGGACAATGCATATAGCAGGAAACAGGTCTTGGCTATGGAGAAATCAATCTTAGGACAA 770
Query 979 GTTGAATGGTACATCACTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCT 1038
|| |||||||||||||| |||||||| |||||||||||| ||| ||| || |||||||||
Sbjct 771 GTCGAATGGTACATCACAGTTCCAACGCCTTATGTGTTCATTGTGCGGTATGTTAAAGCT 830
Query 1039 GCGGTTCCATGTGATGCTGAGATGGAGAAATTGGTGTTCTACT-TGGCTGAGCTGGGACT 1097
||||||||||||| ||||||||||||| ||||||| || | | ||||||||||||||
Sbjct 831 TCGGTTCCATGTGACATTGAGATGGAGAAACTGGTGTTTTA-TCTAGCTGAGCTGGGACT 889
Query 1098 TATGCAGTATCCTATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCAGCGGTTTA 1157
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 890 TATGCAGTATCCCATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCATCGGTTTA 949
Query 1158 TGCTGCGCGTCAGATCCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACAC 1217
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 950 TGCTGCGCGTCAAATCCTTAAGAAGACGCCATTTTGGACTGAGACTTTGAAACATCACAC 1009
Query 1218 TGGCTACTCGGAAGATGAGATTATGGAGCATGCGAAAATGCTGATGAAGTTAAGGGACTC 1277
|||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1010 TGGCTACTTGGAAGATGAGATCATGGAACATGCGAAAATGCTGATCAAGTTAAGGGACTC 1069
Query 1278 GGCTTCAGAGAGTAAGCTAA-TAGCAGTGTTCAAGAAATACTCTGTCTCAGAAAACGCTG 1336
||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 1070 AGCTTCAGAGAGTACGCTAAGT-GCAGTGTTTAAGAAATACTCTGTCTCAGAAAACGCTG 1128
Query 1337 AAGTTGCTCTTCTTCCTTCGCTTGACGACTTCTCTGTTTCTTGTGCATGAAGAAACAAAA 1396
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 AAGTTGCTCTTCTTCCTTCGCTTGACGACTTATCTGTTTCTTGTGCATGAAGAAACAAAA 1188
Query 1397 CCCTAGTCT 1405
|||||||||
Sbjct 1189 CCCTAGTCT 1197
> Ahg932989 jgi|Araly1|932989|scaffold_400977.1
Length=701
Score = 383 bits (207), Expect = 2e-105
Identities = 265/293 (90%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 935 ACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAAGTTGAATGGTACATCA 994
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 370 ACAGGAAACAGGTCTTGGCTATGGAGAAATCGATCTTAGGACAAGTCGAATGGTATATCA 429
Query 995 CTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCTGCGGTTCCATGTGATG 1054
| ||||||||||||||||||| ||||||||| | || |||||| |||||||||||||
Sbjct 430 CGGTTCCAACTCCTTATGTGTGCCTTGCGCGCCATGTCAAAGCTTCGGTTCCATGTGACA 489
Query 1055 CTGAGATGGAGAAATTGGTGTTCTACT-TGGCTGAGCTGGGACTTATGCAGTATCCTATA 1113
||||||||||||| ||||||| || | | || ||||| |||||||||||||||||||||
Sbjct 490 TTGAGATGGAGAAACTGGTGTTTTA-TCTAGCCGAGCTAGGACTTATGCAGTATCCTATA 548
Query 1114 GTTGTCTTAAACCGTCCATCGA-TGCTGGCTGCATCAGCGGTTTATGCTGCGCGTCAGAT 1172
|||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||||| ||
Sbjct 549 GTTGTCTTAAACCGTCCATCGAAT-CTGGCTACATCAGCTGTTTATGTTGCGCGTCAAAT 607
Query 1173 CCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACACTGGCTACT 1225
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 608 CCTTAAGAAGACGCCATTTTGGACTGAGACTTTGAAACATCACATTGGCTACT 660
Score = 279 bits (151), Expect = 3e-74
Identities = 185/202 (92%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 627 CAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGATCACAACC 686
||||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 167 CAAGTACTATAGGACTGTAGAAGAGGAAGGAGGAATCAAAGACTATATTGGATCACAACC 226
Query 687 TGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTTCACAGGAA 746
||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 227 TGAGATAAATGAGAAGATGAGATCGATTCTGATCGATTTGCTTGTAGATGTTCACAGGAA 286
Query 747 GTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGGTTTCTATC 806
||||||||| ||||||||||| || ||| | |||||||||||||||||||||||||||||
Sbjct 287 GTTTGAGTTAATGCCAGAGACACTTTACGTCACCATTAACCTCGTTGATCGGTTTCTATC 346
Query 807 TTTGACAATGGTTCATAGAAGA 828
|||| ||||||||| ||| |||
Sbjct 347 TTTGGCAATGGTTCCTAGGAGA 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5