BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26760.1 Length=1608 Score E Sequences producing significant alignments: (Bits) Value Ahg932988 jgi|Araly1|932988|scaffold_400976.1 1703 0.0 Ahg932989 jgi|Araly1|932989|scaffold_400977.1 383 2e-105 > Ahg932988 jgi|Araly1|932988|scaffold_400976.1 Length=1198 Score = 1703 bits (922), Expect = 0.0 Identities = 1117/1209 (92%), Gaps = 21/1209 (2%) Strand=Plus/Plus Query 203 AACAACAAGGTTCAGATATTATGGCGTCTTCTAGAGTCTCTGATCTTCCTCATCAACGTG 262 ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| Sbjct 4 AACAACAAGGTTCAG--A-TATGGCGTCGTCTAGAGTCTCTGATCTTCCTCATCAACGTG 60 Query 263 GAATCGCAGGTGAAATCAAACCGAAGAATGTTGCAGGACATGGAAGACAAAACCGGAAAG 322 |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| Sbjct 61 GAATCGCAGGTGAAATCAAACCGAGGAATGTTGCGGGACATGGAAGACAAAACCGAAAAG 120 Query 323 TTCTTGGAGACATTGGTAATCTTGTCACTGGTCGTGATGTTGCAA-CAGGAAAGGATGTT 381 |||||||||||||||||||||| |||||||| |||||||||| || || |||||||| || Sbjct 121 TTCTTGGAGACATTGGTAATCTCGTCACTGGCCGTGATGTTGTAACCA-GAAAGGATATT 179 Query 382 GCGAAGAAGGCGAAACAACCACAGCAGCAGACAAAAGCTGAGGTTATTGTCATTAGCCCT 441 |||||||||| | || || | |||||||||||| |||||||| |||||||||||| Sbjct 180 GCGAAGAAGGTG----AA--AC--C-GCAGACAAAAGCCGAGGTTATAGTCATTAGCCCT 230 Query 442 GATGAAAACGAG-AAA--TGCAAACCACATTTTAGCAGAAGAACTCATATAAGAGGAACC 498 || ||||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| Sbjct 231 GACGAAAACGAGAAAAGCTGTAAACCACATTTCAGCAGAAGAACTCATATTCGAGGAACC 290 Query 499 AAGACTTTTACCGCAACCTTAAGAGCTCGAAGCAAGGCTGCGAGTGGACTGAAGGATGCT 558 || ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| Sbjct 291 AAAACTTTTACCGCAACCTTAAGAGCCCGAAGCAAGGCTGCGAATGGAATGAAGGATGCT 350 Query 559 GTGATCGACATTGATGCTGTGGATGCTAACAATGAACTGGCTGCTGTGGAATACGTAGAG 618 ||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 351 GTGATTGACATTGATGCTGCCGATGCTAACAACGAACTGGCTGCTGTGGAATATGTAGAT 410 Query 619 GACATCTTCAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGA 678 |||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| Sbjct 411 GACATCTTCAAGTTTTATAGGACTGTAGAAGAGGAAGGAGGAATCAAAGACTATATTGGA 470 Query 679 TCACAACCTGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTT 738 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 471 TCACAGCCTGAGATAAACGAGAAGATGAGATCGATTCTGATCGATTGGCTTGTAGATGTT 530 Query 739 CACAGGAAGTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGG 798 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct 531 CACAGGAAGTTTGAGTTGATGCCAGAGACGCTTTACCTCACCATTAACCTCGTTGATCGG 590 Query 799 TTTCTATCTTTGACAATGGTTCATAGAAGAGAGCTTCAGCTGTTGGGACTAGGTGCTATG 858 |||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct 591 TTTCTATCTTTGGCAATGGTTCCTAGAAGAGAGCTTCAACTGTTGGGACTAGGCGCTATG 650 Query 859 CTTATAGCTTGCAAGTATGAGGAGATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATT 918 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 651 CTTATAGCTTGCAAGTATGAAGATATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATT 710 Query 919 TCGGACAATGCCTATAACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAA 978 ||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||| Sbjct 711 TCGGACAATGCATATAGCAGGAAACAGGTCTTGGCTATGGAGAAATCAATCTTAGGACAA 770 Query 979 GTTGAATGGTACATCACTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCT 1038 || |||||||||||||| |||||||| |||||||||||| ||| ||| || ||||||||| Sbjct 771 GTCGAATGGTACATCACAGTTCCAACGCCTTATGTGTTCATTGTGCGGTATGTTAAAGCT 830 Query 1039 GCGGTTCCATGTGATGCTGAGATGGAGAAATTGGTGTTCTACT-TGGCTGAGCTGGGACT 1097 ||||||||||||| ||||||||||||| ||||||| || | | |||||||||||||| Sbjct 831 TCGGTTCCATGTGACATTGAGATGGAGAAACTGGTGTTTTA-TCTAGCTGAGCTGGGACT 889 Query 1098 TATGCAGTATCCTATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCAGCGGTTTA 1157 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 890 TATGCAGTATCCCATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCATCGGTTTA 949 Query 1158 TGCTGCGCGTCAGATCCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACAC 1217 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 950 TGCTGCGCGTCAAATCCTTAAGAAGACGCCATTTTGGACTGAGACTTTGAAACATCACAC 1009 Query 1218 TGGCTACTCGGAAGATGAGATTATGGAGCATGCGAAAATGCTGATGAAGTTAAGGGACTC 1277 |||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 1010 TGGCTACTTGGAAGATGAGATCATGGAACATGCGAAAATGCTGATCAAGTTAAGGGACTC 1069 Query 1278 GGCTTCAGAGAGTAAGCTAA-TAGCAGTGTTCAAGAAATACTCTGTCTCAGAAAACGCTG 1336 ||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 1070 AGCTTCAGAGAGTACGCTAAGT-GCAGTGTTTAAGAAATACTCTGTCTCAGAAAACGCTG 1128 Query 1337 AAGTTGCTCTTCTTCCTTCGCTTGACGACTTCTCTGTTTCTTGTGCATGAAGAAACAAAA 1396 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1129 AAGTTGCTCTTCTTCCTTCGCTTGACGACTTATCTGTTTCTTGTGCATGAAGAAACAAAA 1188 Query 1397 CCCTAGTCT 1405 ||||||||| Sbjct 1189 CCCTAGTCT 1197 > Ahg932989 jgi|Araly1|932989|scaffold_400977.1 Length=701 Score = 383 bits (207), Expect = 2e-105 Identities = 265/293 (90%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 935 ACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAAGTTGAATGGTACATCA 994 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 370 ACAGGAAACAGGTCTTGGCTATGGAGAAATCGATCTTAGGACAAGTCGAATGGTATATCA 429 Query 995 CTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCTGCGGTTCCATGTGATG 1054 | ||||||||||||||||||| ||||||||| | || |||||| ||||||||||||| Sbjct 430 CGGTTCCAACTCCTTATGTGTGCCTTGCGCGCCATGTCAAAGCTTCGGTTCCATGTGACA 489 Query 1055 CTGAGATGGAGAAATTGGTGTTCTACT-TGGCTGAGCTGGGACTTATGCAGTATCCTATA 1113 ||||||||||||| ||||||| || | | || ||||| ||||||||||||||||||||| Sbjct 490 TTGAGATGGAGAAACTGGTGTTTTA-TCTAGCCGAGCTAGGACTTATGCAGTATCCTATA 548 Query 1114 GTTGTCTTAAACCGTCCATCGA-TGCTGGCTGCATCAGCGGTTTATGCTGCGCGTCAGAT 1172 |||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||||| || Sbjct 549 GTTGTCTTAAACCGTCCATCGAAT-CTGGCTACATCAGCTGTTTATGTTGCGCGTCAAAT 607 Query 1173 CCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACACTGGCTACT 1225 |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 608 CCTTAAGAAGACGCCATTTTGGACTGAGACTTTGAAACATCACATTGGCTACT 660 Score = 279 bits (151), Expect = 3e-74 Identities = 185/202 (92%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 627 CAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGATCACAACC 686 ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct 167 CAAGTACTATAGGACTGTAGAAGAGGAAGGAGGAATCAAAGACTATATTGGATCACAACC 226 Query 687 TGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTTCACAGGAA 746 ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 227 TGAGATAAATGAGAAGATGAGATCGATTCTGATCGATTTGCTTGTAGATGTTCACAGGAA 286 Query 747 GTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGGTTTCTATC 806 ||||||||| ||||||||||| || ||| | ||||||||||||||||||||||||||||| Sbjct 287 GTTTGAGTTAATGCCAGAGACACTTTACGTCACCATTAACCTCGTTGATCGGTTTCTATC 346 Query 807 TTTGACAATGGTTCATAGAAGA 828 |||| ||||||||| ||| ||| Sbjct 347 TTTGGCAATGGTTCCTAGGAGA 368 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60258767590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5