BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26770.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481549 jgi|Araly1|481549|fgenesh2_kg.4__609__AT2G26770.1 2647 0.0
> Ahg481549 jgi|Araly1|481549|fgenesh2_kg.4__609__AT2G26770.1
Length=1705
Score = 2647 bits (1433), Expect = 0.0
Identities = 1627/1719 (95%), Gaps = 20/1719 (1%)
Strand=Plus/Plus
Query 130 TTTTGTGAAGATTCAACAACAGATCTATACAATGACAAGGGTTACACGCGATTTTCGGGA 189
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1 TTTTGTGAAGATTCAAGAACAGATCTATAAAATGACAAGGGTTACACGCGATTTCCGGGA 60
Query 190 TTCATTACAGAGAGATGGTGTTCCTGCAGTATCAGCAGATGTGAAATTTGCTTCAAGTAG 249
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCATTGCAGAGAGATGGTGTTCCTGCAGTATCAGCAGATGTGAAATTTGCTTCAAGTAG 120
Query 250 ATTTCCTAATTATAGAATTGGAGCTAATGATCAAATATTTGATGTTAAAGACGATCCTAA 309
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 121 ATTTCCTAATTATAGAATTGGAGCTAATGATCAGATATTTGATGTTAAAGATGACCCTAA 180
Query 310 AGTGATGTCCATGAAAGAGGTTGTTGCGCGTGAGACAGCGCAGCTTATGGACCAGCAGAA 369
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 181 AGTGATGTCGATGAAAGAGGTTGTTGCGCGTGAGACAGCACAGCTTATGGACCAGCAAAA 240
Query 370 ACGTTTGTCTGTTCGTGACCTCGCTCATAAATTTGAGAAGGGTTTGGCTGCAGCTGCTAA 429
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 241 ACGTTTGTCTGTTCGTGACCTCGCTAATAAATTTGAGAAGGGATTGGCTGCAGCTGCTAA 300
Query 430 GCTATCTGAGGAGGCAAAACTCAAAGAAGCAACTTCGTTGGAGAAACATGTTCTTTTAAA 489
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 301 GCTATCTGAGGAGGCAAAACTTAAAGAAGCAACTTCCTTGGAGAAACATGTTCTTTTAAA 360
Query 490 GAAACTTCGAGATGCATTGGAGTCTCTAAGAGGACGTGTGGCAGGTAGAAACAAGGATGA 549
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GAAACTTCGAGATGCATTGGAGTCTCTAAGAGGACGTGTGGCCGGTAGAAACAAGGATGA 420
Query 550 TGTAGAGGAAGCCATTGCCATGGTTGAAGCTCTAGCTGTTCAGTTGACTCAGCGAGAAGG 609
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TGTAGAGGAAGCCATTGCCATGGTTGAAGCTCTGGCTGTTCAGTTGACTCAGCGAGAAGG 480
Query 610 AGAGCTATTCATAGAAAAAGCGGAAGTGAAAAAGCTAGCGTCTTTTTTAAAGCAGGCCTC 669
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 481 AGAGCTGTTCATAGAAAAAGCGGAAGTGAAGAAGCTAGCGTCTTTCTTAAAGCAGGCCTC 540
Query 670 AGAGGATGCTAAGAAACTTGTCGACGAGGAAAGAGCGTTTGCACGTGCTGAGATTGAAAG 729
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 541 AGAGGATGCTAAGAAACTTGTCGACGAGGAGAGAGCTTTTGCACGTGCTGAGATTGAAAG 600
Query 730 TGCAAGAGCAGCTGTACAAAGAGTTGAAGAAGCCCTGCGAGAACATGAACAGATGTCTCG 789
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 TGCCAGAGCAGCTGTACAAAGAGTGGAAGAAGCCCTGCGAGAACATGAACAGATGTCTCG 660
Query 790 TGCCTCTGGGAAACAAGACATGGAAGATCT-AATGAAGGAAGTTCAAGAAGCTAGGCGGA 848
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 661 GGCCTCTGGGAAACAGGACATGGAAGA-CTTAATGAAGGAAGTTCAAGAAGCTAGGCGGA 719
Query 849 TTAAAATGCTGCATCAACCAAGCAGGGTAATGGATATGGAATATGAGCTTCGAGCACTAA 908
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 720 TTAAAATGCTGCATCAGCCAAGCAGGGTCATGGACATGGAATATGAGCTTCGAGCACTGA 779
Query 909 GAAATCAGCTTGCAGAGAAATCAAAACATTTTCTTCAACTACAAAAGAAGCTCGCAATGT 968
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 780 GGAATCAGCTTGCAGAGAAATCTAAACATTTTCTTCAGCTACAAAAGAAGCTCGCAATGT 839
Query 969 GCAGAAAGAGCGAGGAAAATATATCCCTTGTATATGAAATAGATGGCACTGAAGCTCTAG 1028
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GCAGAAAGAGCGAGGAAAATATATCCCTTATATATGAAATAGATGGCACTGAAGCTCTAG 899
Query 1029 GATCTTGTTTGCGAGTTAGACCTTGCTCCAATGATGCACCTGATCTTTCCAAGTGTACGA 1088
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 900 GTTCTTGTTTGCGAGTTAGACCTTGCGCCAATGATGCTCCTGATCTTTCCAAGTGTACGA 959
Query 1089 TACAATGGTACCGTTCATCTTCAGATGGCTCCAAGAAGG-AGCTTATATCAGGTGCCACA 1147
|||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||
Sbjct 960 TACAATGGTACCGTTCATCTTCTGATGGCAGCAA-AAGGGAGCTTATATCAGGTGCCACA 1018
Query 1148 AAATCAGTTTACGCTCCCGAGCCTTTTGACGTTGGACGAGTCTTGCATGCAGATATCATC 1207
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
Sbjct 1019 AAATCAGTTTACGCTCCCGAGCCTTTTGATGTTGGACGAGTCTTACACGCAGATATCA-C 1077
Query 1208 T-ACGATGGCCATTCGCTTTCGTTATCCACAGTGGGAAAGATTGATCCAGCTGCTGGATT 1266
| ||||||||| || |||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1078 TTACGATGGCCGTTTGCTTTCATTATCCACTGTTGGAAAGATTGATCCAGCTGCTGGATT 1137
Query 1267 GGGTAGCTATGTCGAGGCATTAGTACGGAAACACGATGTTGATTTCAATGTAGTTGTGAC 1326
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGGTAGCTACGTGGAGGCATTAGTACGGAAACACGATGTTGATTTCAATGTAGTTGTGAC 1197
Query 1327 CCAAATGAGTGGGGAAGACCATACATCAGAATCTATCCACTTGTTTCATGTTGGTAAAAT 1386
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1198 CCAAATGAGTGGGGAAGACCATACATCAGAATCTATCCACCTGTTTCACGTTGGTAAAAT 1257
Query 1387 GAGGATAAAACTTTGCAAGGGAAAGACAGTGATTGCAAAAGAGTACTACTCTAGTGCAAT 1446
||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1258 GAGGATAAAGCTTTGCAAGGGAAAGACAGTCATTGCGAAAGAGTACTACTCCAGTGCGAT 1317
Query 1447 GCAGCTATGTGGAGTGAGAGGAGGTGGAAATGCTGCAGCTCAGGCATTGTATTGGCAGGC 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCAGCTATGTGGAGTGAGAGGAGGTGGAAATGCTGCAGCTCAGGCATTGTATTGGCAGGC 1377
Query 1507 GAAGAAAGGAGTGTCATTTGTGATAGCTTTTGAGTCTGAGAGAGAAAGAAACGCTGCGAT 1566
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAAGAAAGGTGTATCCTTTGTGATAGCTTTTGAGTCTGAGAGAGAAAGAAACGCTGCGAT 1437
Query 1567 CATGCTTGCACGAAGATTTGCTTGTGATTGTAATGTGACACTTGCTGGTCCAGAAGACAG 1626
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1438 CATGCTTGCACGAAGATTCGCTTGTGATTGTAATGTGACGCTTGCTGGTCCAGACGACAG 1497
Query 1627 AACAGAGACGGGTCAAAGCCCTTGAAGAACGGCTCTTACCTAAGTTGTGATTTTTAGTAT 1686
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 1498 AACAGAGACGGGTCAAAGCCCTTGAAGAATGGCTCTTAACTAAGTTGTGATTTT-AGTAT 1556
Query 1687 CCGTAAGAGCTTATTTGTTTTGTAGTTTATATAGGTTT-TAGGCATTTGTTTGAATTGTA 1745
|||||||||||| ||| |||| | |||| | ||| ||| || ||| ||||||||||||
Sbjct 1557 CCGTAAGAGCTTTTTTTTTTT-T-GTTT-TGTAG-TTTATAT--ATT-GTTTGAATTGTA 1609
Query 1746 CTTGTATT-GTGTGTAAAAATATCGAG-CAGTGAAGTAAGAGGTGATGGTGAATCTATAT 1803
||| | || |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1610 CTTCTGTTTGTGTGTAAAAATATGGAATCAGTG---TAAGAGGTGATGGTGAATCTATAT 1666
Query 1804 GTAACGGGTGGCTTGTGTTTATTCATTTGTTTTGATCTT 1842
|||||||||||||||||||||||||||||||||||||||
Sbjct 1667 GTAACGGGTGGCTTGTGTTTATTCATTTGTTTTGATCTT 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5