BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26790.1
Length=2400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932992 jgi|Araly1|932992|scaffold_400980.1 3352 0.0
Ahg920264 jgi|Araly1|920264|scaffold_101545.1 93.5 7e-18
> Ahg932992 jgi|Araly1|932992|scaffold_400980.1
Length=2438
Score = 3352 bits (1815), Expect = 0.0
Identities = 2219/2413 (92%), Gaps = 32/2413 (1%)
Strand=Plus/Plus
Query 1 ATGCGGTTTTCTCCAACCTTCTTCTTACTCTCACAATTGCGATTGACTCGACGAAGAGCA 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGCGGTTTTCTCCAACCTTCTTCTTACTCTCACAATTGCGATTGACT---CGAAGAGCA 77
Query 61 GCCACCTCTTCGCGTTTCTACGCCGTCTCTGCTCTCAACAATCCTAATAATCTCTCAGAC 120
||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 78 GCCACCTCTTCGCGTTTCTTCGCCGTCTCTGCTCTCAACAACCCTAACAATCTCTCAGAT 137
Query 121 TCTGAGCAGCAGCAGGTGAATCATCTTAATCTCTCCAAGCTTACTCAACATGGTCTTCAG 180
||||| | || ||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 138 TCTGA--A-CAACAGGTGAATCATCTTAACCTCTCTAAGCTTACTCAATATGGTCTTCAG 194
Query 181 CGACTCCTGAATAGTACCAGAGATGACCCAAATCTCGCTTTGTCGTTTTTGCGACAGCTT 240
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 195 CGACTCCTGAATAGTACCAGAGATGACCCAAATCAGGCTTTGTCGTTTTTACGACAGCTT 254
Query 241 AAGGAACATGGTGTGTCCCCTAATGTCAATGCTTACGCAACTCTTGTCAGAATTCTTACT 300
|| ||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 255 AAAGAACATGATGTTTCTCCTAATGTTAATGCTTACGCAACTCTTGTCAGAATTCTTACT 314
Query 301 ACTTGGGGTTTGGACATCAAGTTAGATTCTGTTTTAGTTGAACTAATTAAGAACGAGGAG 360
| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 315 AGTTGGGGTTTGGACAGGAAGTTAGATTCTGTGTTAGTTGAACTAATTAAGAACGAGGAG 374
Query 361 CGTGGTTTCACTGTAATGGATTTGATTGAAGTTATT-G-G-TGAACAAGCTGAGGAAAAG 417
|||||||||| ||||||||||||||||||||||||| | | ||| ||||||||||| |
Sbjct 375 CGTGGTTTCAGTGTAATGGATTTGATTGAAGTTATTGGAGAAGAAGAAGCTGAGGAAGAT 434
Query 418 AAACGATCATTT-GTTTTGATTCGAGTCTCTGGTGCTTTGGTTAAAGCTTATGTTAGTCT 476
|||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 435 CAACGGTC-TTTGGTTTTGATTCGAGTCTCTGGTGCTTTGGTTAAAGCTTATGTTGGTCT 493
Query 477 TGGTATGTTCGACGAAGCTACCGATGTTTTGTTTCAGAGTAAACGGTTGGATTGTGTTGT 536
|| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||| |
Sbjct 494 CGGGATGTTTGACGAGGCGATCGATGTTTTGTTTCAGAGTAAACGGTTGGATTGTGTTCT 553
Query 537 CGATATAAAGGCGTGTAATTTCTTGATGAATCGTATGACTGAGTTTGGGAAAATTGGTAT 596
|||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 554 CGATATTAAGGCGTGTAATTTCTTGATGAATCGTTTGATTGAGTTTGGGAAAATTAGTAT 613
Query 597 GCTGATGACTTTGTTTAAGCAACTTAAGCAGTTAGGGTTGTGTGCAAATGAGTACACGTA 656
| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 614 GGTGGTGGCTTTGTTTAAGCAACTTAAGCAGTTGGGGTTGTGTGCAAATGAGTACACGTA 673
Query 657 TGCTATTGTGGTTAAGGCGTTGTGTAGGAAAGGTAATTTAGAAGAAGCAGCTATGTTGCT 716
||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 674 TGCGATTGTGGTTAAGGCATTGTGTAGGAAAGGCGATTTAGAAGGAGCAGCTATGTTGCT 733
Query 717 TATCGAAAATGAGAGTGTGTTTGGTTATAAGACTTTCATTAACGGACTTTGTGTTACTGG 776
| | |||| | ||| |||||| |||||||||||||||| ||||||||||||| | |||
Sbjct 734 TCTGGAAAGTCCGAGCGTGTTTTCTTATAAGACTTTCATTGACGGACTTTGTGTCAATGG 793
Query 777 AGAGACAGAGAAAGCTGTTGCTTTGATCTTAGAGCTGATAGATAGGAAAT-ATCTGGCTG 835
|||||||||||||||||||| |||||| ||| ||||||||| | ||| ||||||||
Sbjct 794 AGAGACAGAGAAAGCTGTTGTTTTGATAGAAGAAATGATAGATATG-AATGTTCTGGCTG 852
Query 836 GTGATGACCTCAGAGCTGTGCTTGGTATGGTGGTTCGCGGTTTCTGTAATGAGATGAAAA 895
|||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 853 GTGATGACCTTAGAACTGTATTTGGTATGGTGGTTCGCGGTTTTTGTAATGAGATGAAAA 912
Query 896 TGAAAGCTGCTGAAAGTGTTATTATTGAAATGGAGGAAATTGGGTTTGGTCTTGATGTTT 955
|| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 913 TGGAAGCTGCGGAAAGTGTTATTCTTGAAATGGAGAAAATTGGGTTTGGTCTTGATG-TT 971
Query 956 A-TGCTTGTTTAGCGGTGATTGATCGATATTGTAAGAACATGAATTTACCTGAAGCATTG 1014
| |||||| | |||| | |||||||||||||| |||| |||||||||||||||||||||
Sbjct 972 AGTGCTTGCTCAGCGATAATTGATCGATATTGCAAGAGTATGAATTTACCTGAAGCATTG 1031
Query 1015 GGGTTTTTAGATAAAATGTTGGGAAAAGGATTGAAAGTAAATTGTGTGATTGTTAGTTTG 1074
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1032 GGGTTTTTAGATAAAATGTTGGGAAAAGGACTGAAAGTAAATTGTGTGATTGTTAGTTCG 1091
Query 1075 ATTCTTCAGTGTTATTGTAAGATGGACATGTGTTTGGAAGCATTAGAAAAGTTTAAAGAA 1134
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1092 ATTCTTCAGTGCTATTGTAAGATGGACATGTGTTTGGAAGCGTTAGAGAAGTTTAAAGAA 1151
Query 1135 TTTAGAGACATGAACATTTTCCTTGACAGAGTTTGTTACAATGTCGCGTTTGATGCGTTG 1194
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1152 TTTAGAGACATGAATATTTTCCTTGACAGAGTTTGTTACAATGTCGCATTTGATGCGTTG 1211
Query 1195 AGCAAGCTGGGGAGAGTGGAAGAAGCTTTTGAGCTGCTACAAGAAATGAAGGATAGAGGA 1254
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct 1212 AGCAAGCTTGGGAGAGTGGAAGAAGCTATTGAGCTGCTCCAAGAAATGAAGGATAAAGGA 1271
Query 1255 ATTGTTCCTGATGTCATCAACTACACAACTCTGATAGATGGCTATTGCCTTCAAGGTAAA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1272 ATTGTTCCTGATGTCATCAACTACACAACTCTGATAGATGGCTATTGCCTTAAAGGTAAA 1331
Query 1315 GTTGTTGATGCCCTTGATTTGATTGACGAAATGATAGGAAATGGTATGTCGCCTGATTTA 1374
|||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1332 GTTGTTGATGCCCTTGATTTGATTGATGAAATGATAGGAAATGGTACCTCTCCTGATTTA 1391
Query 1375 ATCACATACAACGTGCTTGTCAGTGGATTGGCCAGAAATGGTCATGAGGAAGAGGTACTT 1434
|| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1392 ATTACATACAATGTGCTTGTCAGTGGATTGGCCAGGAATGGTCATGAGGAAGCGGTACTT 1451
Query 1435 GAAATTTATGAAAGAATGAAAGCTGAAGGTCCAAAGCCCAATGCTGTCACTAACAGTGTG 1494
|| ||||||||||||||||||||||| |||| |||||| |||||||||||| ||| ||||
Sbjct 1452 GAGATTTATGAAAGAATGAAAGCTGAGGGTCTAAAGCCTAATGCTGTCACTGACAATGTG 1511
Query 1495 ATCATTGAAGGCTTGTGTTTTGCACGTAAAGTAAAAGAAGCCGAAGATTTCTTCA-GTAG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1512 ATCATTGAAGGCTTGTGTTTTGCACGTAAAGTAAAAGAAGCCGAAGATTTCTTCATG-AG 1570
Query 1554 TTTAGAGCAAAAATGTCCAGAAAATAAAGCCAGTTTTGTGAAAGGTTACTGTGAAGCTGG 1613
| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1571 TCTAGAGCAAAAATGTCCAGAAAATAAAGCCAGTTTGGTGAAAGGTTACTGTGAATCTGG 1630
Query 1614 CCTTTCTAAAAAGGCATATAAAGC-ATTCGTTAGATTGGAATACCCTCTGCGCAAAAGTG 1672
||||||||||||||| | |||| | |||||||| | ||||||||||||||||||| ||||
Sbjct 1631 CCTTTCTAAAAAGGCCTTTAAA-CTATTCGTTACACTGGAATACCCTCTGCGCAAGAGTG 1689
Query 1673 TGTACATCAAACTATTCTTTAGTCTCTGCATCGAGGGTTATCTCGAGAAAGCTCATGAC- 1731
||||||||||| ||||||||||||| ||||| ||||||| |||||| ||||||||| ||
Sbjct 1690 TGTACATCAAATTATTCTTTAGTCTATGCATTGAGGGTTGTCTCGACAAAGCTCAT-ACC 1748
Query 1732 GTACTGAAGAAAATGTCAGCTTATCGAGTTGAACCTGGGAGGAGCATGTGTGGCAAAATG 1791
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 GTACTGAAGAGAATGTGGGCTTATCGAGTTGAACCTGGGAGGAGCATGTGTGGCAAAATG 1808
Query 1792 ATTGGGGCATTTTGTAAGTTAAATAATGTGAG-AGAGGCCCAAGT-GTTATTTGACACGA 1849
|||||||| || |||| |||||||| || | | ||| ||||| | |||||||||||| |
Sbjct 1809 ATTGGGGCGTTGTGTAGGTTAAATAGTGCG-GTAGACGCCCA-GCAGTTATTTGACACAA 1866
Query 1850 TGGTTGAGAGAGGACTCATCCCTGATCTGTTTACTTATACAATCATGATTCACACCTACT 1909
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1867 TGGTTGAGAGAGGAGTCATCCCTGATCTCTTTACTTATACAATCATGATTCACACCTACT 1926
Query 1910 GTAGGCTAAATGAGTTACAGAAAGCCGAGTCTCTTTTTGAGGACATGAAGCAGAGAGGAA 1969
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1927 GTAGGCTAAATGAGTTACAGAAAGCTGAGTCTCTTTTTGAGGACATGAAGCAGAGAGGAA 1986
Query 1970 TCAAACCTGATGTGGTAACATACACAGTTTTGCTTGATAGGTATCTGAAGTTGGATCCAG 2029
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1987 TAAAACCTGATGTGGTAACATACACAGTTTTACTTGATAGGTACCTGAAGTTGGATCCAG 2046
Query 2030 AGCATCATGAAACATGTTCTGTTCAAGGAGAAGTGGGAAAAAGAAAAGCTTCAGAAGTTT 2089
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2047 AGCATCATGAAACAGGTTCTGTTCAAGGAGAAGTGGGAAAAAGAAA---TTCAGAACTTT 2103
Query 2090 TGAGAGAATTTTCAGC-TGCTGGTATTGGACTAGATGTTGTATGCTATACAGTTTTGATA 2148
|||||||||| ||||| | ||||||||||| |||| |||||| |||||||||||||||||
Sbjct 2104 TGAGAGAATTCTCAGCCT-CTGGTATTGGATTAGACGTTGTAAGCTATACAGTTTTGATA 2162
Query 2149 GATCGTCAGTGCAAGATGAACAATTTAGAACAAGCCGCTGAACTTTTTGATCGAATGATA 2208
|||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 2163 GATCGTCAGTGCAAGATGGACAAGCTAGAACAAGCTGCTGAACTTTTTGATCGAATGATA 2222
Query 2209 GACAGCGGGTTGGAGCCTGATATGGTGGCATACACAACTCTAATATCCAGTTATTTTCGC 2268
||||||||| ||||||||||||| ||||| |||||| |||||||||| |||||||||||
Sbjct 2223 GACAGCGGGCTGGAGCCTGATATAGTGGCTTACACAGCTCTAATATCTAGTTATTTTCGG 2282
Query 2269 AAAGGATACATAGACATGGCAGTCACACTTGTTACCGAACTGTCAAAAAAGTATAATATA 2328
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 AAAGGATACATAGATAAGGCAGTCACACTTGTTACCGAACTGTCAAAAAAGTATAATATA 2342
Query 2329 CCGAGTGAA-AGTTTTGAGGCTGCAGTTAAAAGTGCTGCTTTGAAGGCAAAGAGATTTCA 2387
|||| |||| | |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2343 CCGACTGAACA-TTTTGAGGCTGCAGTTAAGCGTGCTGCTTTGAAGGCGAAGAGATTTCA 2401
Query 2388 ATATGGGGAATGA 2400
| |||||||||||
Sbjct 2402 AAATGGGGAATGA 2414
> Ahg920264 jgi|Araly1|920264|scaffold_101545.1
Length=2693
Score = 93.5 bits (50), Expect = 7e-18
Identities = 98/120 (82%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 1888 ACAATCATGATTCACACCTACTG-TAGGCTAAATGA-GTTACAGAAAGCCGAGT-CTCTT 1944
|||||||||||| ||| || || | | |||| || || | |||||||| | | |||||
Sbjct 2125 ACAATCATGATTAACAGATATTGCCA-GTTAAACGACGTGA-AGAAAGCCTA-TGCTCTT 2181
Query 1945 TTTGAGGACATGAAGCA-GAGAGGAATCAAACCTGATGTGGTAACATACACAGTTTTGCT 2003
||| | ||||||||| | ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2182 TTTAAAGACATGAAG-AGGAGAGAAATCGTACCTGATGTGGTAACATACACAGTTTTGCT 2240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90426241630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5