BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26800.2
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481553 jgi|Araly1|481553|fgenesh2_kg.4__613__AT2G26800.2 2374 0.0
> Ahg481553 jgi|Araly1|481553|fgenesh2_kg.4__613__AT2G26800.2
Length=1575
Score = 2374 bits (1285), Expect = 0.0
Identities = 1493/1590 (94%), Gaps = 28/1590 (2%)
Strand=Plus/Plus
Query 27 CCTCCCAACCAGAATTAGTGGAGATAAACTTGACGCGTCCCTTCTTCATTCTCCGTCTTC 86
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CCTCCCAACCAGAATTAGAGGAGATAAACTTGACGCGTCCCTTCTTCATTCTGCGTCTTC 60
Query 87 TTCACGTCACCGGAAAAACGACGAATCTCATTGCCTGAGATTCTTCATC---GGAATTAA 143
|| |||||| ||| ||| |||||||| |||||||||||||||||||| |||||| |
Sbjct 61 TTTACGTCATCGG--AAA--ACGAATCTTATTGCCTGAGATTCTTCATCGGAGGAATT-A 115
Query 144 ACCTCCGGAGGAATTAATCAC-G-AGAACTCAAACTATTGCTGAAAAATGCAATGGAATG 201
| ||| | || |||| | | ||||||||||||||||||||||||||||||||||
Sbjct 116 A--TCC----CACTT-TTCACGGTAAAACTCAAACTATTGCTGAAAAATGCAATGGAATG 168
Query 202 GGGTGAGACGAGCCCATTCTATATGGTGCAAGAGATTAACAAACAACACTCATTTGCATC 261
||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 169 GGGCAAGAAGAGCCTATTCTTTATGGTGCAAGAGATTAACACACAACACTCATTTGCATC 228
Query 262 ATCCTTCTATTCCAGTCTCACATTTTTTCACCATGTCGAGTTTGGAGGAGCCGCTAAGCT 321
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 229 ATCCTTCTATTCCAGTCTCACATTTGTTCACCATGTCGAGTTTGGAGGAGCCACTAAGCT 288
Query 322 TTGACAAGTTGCCAAGTATGAGCACTATGGATAGGATTCAGAGATTTTCTTCCGGTGCTT 381
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 289 TTGACAAGTTGCCAAGTATGAGCACTATGGATAGGATTCAGAGATTTTCGTCTGGTGCTT 348
Query 382 GTCGCCCCAGGGATGATGTCGGTATGGGACACCGTTGGATTGAAGGAAGAGATTGCACTA 441
|| | || || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 349 GTAGGCCGAGAGATGATGTCGGTATGGGACACCGTTGGATTGAGGGAAGAGATTGCACCA 408
Query 442 CCTCTAACAGTTGCATTGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAA 501
||||||| ||||||||||||||||| |||||||||| ||||||||| || ||||||||||
Sbjct 409 CCTCTAATAGTTGCATTGATGATGAGAAAAGCTTTGGTAAAGAGTCCTTTCCGTGGAGAA 468
Query 502 GGCATACTCGGAAATTATCTGAAGGAG---AGCATATGTTTAGGAATATTTC-GTTTGCT 557
||||||||| ||| |||||||||||| | ||| ||||| |||||||||| ||| |
Sbjct 469 AGCATACTCGAAAACTATCTGAAGGAGAACAACATCTGTTTCGGAATATTTCAATTT-CA 527
Query 558 GGAAGGACTTCTACTGTTTCTGGGACTTTAAGGGAATCCAAAAGTTTTAAGGAGCAGAAG 617
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 528 GGAAGGACTTCCACAGTTTCTGGGACTTTAAGGGAATCCAAAAGTTTCAAGGAGCATAAG 587
Query 618 TATAGCACATTTAGCAATGAGAATGGC-ACGTCGCATAT-AAGTAATAAGATCTCTAAAG 675
|||||||||| |||||||||||||||| | | ||| || ||||||||||||||||||||
Sbjct 588 TATAGCACATGTAGCAATGAGAATGGCAAAAT-GCA-ATCAAGTAATAAGATCTCTAAAG 645
Query 676 GTATACCAAAGTTTGTGAAGATTGTAGAAGTTGGTCCAAGAGATGGCCTGCAGAATGAGA 735
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 646 GTATACCAAAGTTTGTGAAGATTGTAGAAGTTGGTCCAAGGGATGGCCTGCAGAATGAGA 705
Query 736 AAAATATAGTACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGAT 795
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AAAATATAGTACCTACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGAT 765
Query 796 TGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGCTTGCAGATG 855
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 766 TGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAATGGGTTCCTCAGCTTGCAGATG 825
Query 856 CAAAGGATGTAATGGATGCAGTAAATACTTTAGATGGGGCTCGATTACCGGTTCTGACAC 915
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 826 CAAAGGATGTAATGGATGCAGTAAATACTTTAGATGGGGCTCGATTGCCCGTTCTGACAC 885
Query 916 CGAATCTAAAAGGCTTTCAAGCGGCTGTATCTGCAGGTGCAAAGGAAGTTGCAATCTTTG 975
||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 886 CGAATCTAAAAGGCTTTGAAGCAGCTGTCTCTGCAGGTGCTAAGGAAGTTGCAATCTTTG 945
Query 976 CATCGGCTTCTGAGTCATTCTCCTTGTCAAATATTAACTGTACCATCGAAGAGAGTCTCT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CATCGGCTTCTGAGTCATTCTCCTTGTCAAATATTAACTGTACCATCGAAGAGAGTCTCT 1005
Query 1036 TGAGATATCGTGTTGTTGCCACTGCTGCAAAGGAGCATTCGGTTCCAGTCCGTGGGTATG 1095
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1006 TGAGATATCGTGCTGTTGCCACTGCCGCAAAGGAGCATTCGGTTCCAGTCCGTGGGTATG 1065
Query 1096 TATCTTGCGTTGTGGGGTGTCCAGTAGAGGGA-CCTGTTCTACCCTCAAAAGTGGCTTAT 1154
|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 1066 TATCTTGCGTTGTGGGGTGTCCAGTAGAGGGAGCC-GTTCCACCCTCAAAAGTGGCTTAT 1124
Query 1155 GTTGTGAAAGAACTCTATGACATGGGCTGCTTTGAGATTTCTCTGGGTGATACAATTGGA 1214
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTTGTGAAAGAACTCTATGATATGGGCTGCTTTGAGATTTCTCTGGGTGATACAATTGGA 1184
Query 1215 ATCGGCACTCCTGGTTCTGTGGTTCCAATGCTTGAAGCCGTGATGGCAGTTGTGCCAGCG 1274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATCGGCACTCCTGGTTCTGTGGTTCCAATGCTTGAAGCCGTGATGGCAGTTGTGCCAGCC 1244
Query 1275 GACAAGCTGGCTGTTCACTTCCATGATACCTATGGGCAAGCTCTTGCAAACATATTGGTG 1334
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1245 GACAAGCTGGCTGTTCACTTCCATGACACATATGGGCAAGCTCTTGCAAATATATTGGTG 1304
Query 1335 TCTCTCCAGATGGGAATAAGCATAGTAGACTCATCAATTGCCGGATTAGGCGGCTGCCCA 1394
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1305 TCTCTCCAAATGGGAATAAGCATAGTAGACTCATCAATTGCTGGATTAGGCGGCTGCCCA 1364
Query 1395 TATGCAAAAGGAGCTTCAGGAAATGTAGCCACAGAAGATGTGGTTTACATGTTGAACGGT 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TATGCAAAAGGAGCTTCAGGAAATGTAGCCACAGAAGATGTGGTTTACATGTTGAACGGT 1424
Query 1455 TTAGGCGTCCACACCAATGTCGACTTGGGAAAGCTTATAGCTGCTGGAGATTTCATCAGC 1514
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TTAGGCGTCCAGACCAATGTCGACTTGGGAAAGCTTATAGCTGCTGGAGATTTCATCAGC 1484
Query 1515 AAGCATCTCGGTCGTCCCAATGGTTCGAAGGCTGCCGTTGCCCTCAACCGTCGTATCACA 1574
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1485 AAGCATCTCGGCCGTCCCAATGGTTCAAAGGCTGCCGTTGCCCTCAACCGTCGGATCACA 1544
Query 1575 GCTGATGCCTCCAAGATATGAGTTTTATTA 1604
||||||||||||||||||||||||||||||
Sbjct 1545 GCTGATGCCTCCAAGATATGAGTTTTATTA 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5