BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26830.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933001 jgi|Araly1|933001|scaffold_400989.1 1847 0.0
> Ahg933001 jgi|Araly1|933001|scaffold_400989.1
Length=1165
Score = 1847 bits (1000), Expect = 0.0
Identities = 1103/1153 (96%), Gaps = 6/1153 (1%)
Strand=Plus/Plus
Query 36 AAAATGGGAGCAGCGAAGAATATCTGGGCATTAGCCAACGCCGAAGATGCAGCTAACGAC 95
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 18 AAAATGGGAGCAGCGAAGAATATCTGGGCATTAGCCAACGCCGAAGATGAAGCTAACGAC 77
Query 96 GCCGAACAAATCCCTTATTCTTCGTTCGTCGTCGACACGTCTTTGCCTCTTCCTCTCATG 155
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 78 GCCGAACAAATTCCTTATTCTTCGTTCGTCGTCGATACGTCTTTGCCTCTTCCTCTCATG 137
Query 156 ATTCCTCGTATCATAGAGTTATGTAAAGATCTGTTCAAGAATTGGGGAGAGCTTGATGAT 215
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 138 ATTCCTCGTATCATAGAGTTATGTAAAGATCTGTTCAAGAATTGGCGAGATCTTGATGAT 197
Query 216 TCACTCTTCTCTGTTGAGAGAGTATCTGGAGGCATTACAAATCTTTTGCTGAAGGTTTCT 275
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 198 TCACTCTTCTCTGTTGAGAGAGTATCTGGAGGCATCACAAATCTATTGCTCAAGGTTTCT 257
Query 276 GTGAAAGAGGACACTAATAAAGAAGTGTCTGTTACAGTGAGACTGTATGGGCCTAACACT 335
||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 258 GTGAAGGAGGACACTGATAAACAAGTGTCTGTTACAGTGCGACTGTATGGGCCTAACACG 317
Query 336 GAGTATGTTATTAACCGGGAGAGAGAGATTCTGGCTATCAAGTATCTCTCGGCTGCCGGA 395
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 318 GAGTATGTTATTAACCGGGAGAGAGAGATACTGGCTATCAAGTATCTCTCGGCTGCCGGA 377
Query 396 TTTGGTGCCAAGTTGCTTGGTGGTTTTGGAAATGGCATGGTGCAATCGTTCATCAATGCA 455
||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct 378 TTTGGTGCCAAGTTGCTTGGTGGATTTGGAAATGGCATGGTGCAATCATTCATCTATGCA 437
Query 456 AGAACCTTAGAGCCATCAGACATGAGAGAGCCAAAGATTGCTGCACAAATTGCCAGAGAA 515
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 438 AGAACCTTAGAGCCATCAGACATGAGAGAGCCAAAGATTGCTGCGGAAATTGCCAAAGAA 497
Query 516 CTTGGAAAGTTTCATAAAGTGGACATACCAGGTTCCAAGGAACCTCAGCTGTGGGTTGAT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CTTGGAAAGTTTCATAAAGTGGACATACCAGGTTCCAAGGAACCTCAGCTGTGGGTTGAT 557
Query 576 ATCTTGAAGTTCTATGAAAAAGCATCTACTCTTACGTTTGAAGAACCTGATAAGCAGAAG 635
||||| || ||||||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 558 ATCTTCAAATTCTATGAAAAAGCATCTACTCTTAGGTTTGAAGAGCCTGACAAGCAGAAG 617
Query 636 CTCTTTGAGACTATTTCGTTTGAAGAACTCCACAAAGAAATTATTGAGCTAAGGGAATTC 695
||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 618 CTCTTTGAGACAATTTCGTTTGAAGAACTGCATAAAGAAATTATTGAGCTCAGGGAATTC 677
Query 696 ACAGGCTTACTTAACGCACCTGTGGTGTTTGCTCATAACGATTTACTATCAGGAAACTTC 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 678 ACAGGCTTACTTAACGCACCTGTGGTGTTTGCTCATAACGATTTACTATCAGGAAACCTC 737
Query 756 ATGCTGAATGATGAAGAAGAGAAACTATACTTGATTGATTTCGAGTATGGATCATACAAC 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ATGCTGAATGATGAAGAAGAGAAACTATACTTGATTGATTTCGAGTATGGATCATACAAC 797
Query 816 TATAGAGGCTTTGACATCGGAAATCACTTCAATGAATATGCAGGATACGACTGTGATTAC 875
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 798 TATAGAGGCTTCGACATCGGAAATCACTTCAATGAATATGCAGGATATGACTGTGATTAC 857
Query 876 AGCCTGTACCCAAGTAAAGAGGAACAATATCATTTCATCAAGCATTACTTACAGCCAGAC 935
||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 858 AGCATGTACCCAAGTAAAGAAGAACAATATCATTTCATCAAGCATTACTTGCAGCCAGAC 917
Query 936 AAACCAGACGAGGTCAGTATCGCTGAAGTAGAATCAGTCTTTGTAGAGACAGATGCGTAT 995
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 918 AAACCAGATGAGGTCAGTAAGGCTGAAGTAGAATCAGTCTTCGTAGAGACAGATGCGTAT 977
Query 996 AAATTAGCATCTCATTTGTACTGGGCAATATGGGCGATCATCCAGGCAAGGATGTCTCCC 1055
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 978 AAATTAGCATCTCATTTGTACTGGGCAATATGGGCTATCATCCAGGCAAGGATGTCTCCC 1037
Query 1056 ATTGAGTTTGAATATTTGGGTTACTTCTTTTTGCGGTACAATGAATACAAGAAGCAGAAG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATTGAGTTTGAATATTTGGGTTACTTCTTTTTGCGGTACAATGAATACAAGAAGCAGAAG 1097
Query 1116 CCACTTACTTTTTCACTTGTTACATCTCACCTCTCAGCATC-GCTGTAGCCTTTGGTTGG 1174
|||||||| ||||||||||||||||||||||| || ||||| | |||||||||||
Sbjct 1098 CCACTTACCTTTTCACTTGTTACATCTCACCTGTCTGCATCTG-TGTAGCCTTTGA---- 1152
Query 1175 CCAAAATGGTTAA 1187
|||||||||||||
Sbjct 1153 CCAAAATGGTTAA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5