BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26840.2
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320472 jgi|Araly1|320472|fgenesh1_pm.C_scaffold_4000529 545 2e-154
> Ahg320472 jgi|Araly1|320472|fgenesh1_pm.C_scaffold_4000529
Length=864
Score = 545 bits (295), Expect = 2e-154
Identities = 322/335 (96%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 726 GGGTTGGTATAGTGGAGGATTTGGATATGGATTATGGATAGGAACACTTGTTGCTTCAGG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GGGTTGGTATAGTGGAGGATTTGGATATGGATTATGGATAGGAACACTTGTTGCTTCAGG 590
Query 786 CTTTTGTGTTATTCCGGTTTCCGCATCTTTATGGAAGAGGCATTTTCAACTTGCTAGTGG 845
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 591 CTTTTGTGTCATTCCAGTTTCTGCATCTTTATGGAAGAGGCATTTTCAACTTGCTAGTGG 650
Query 846 AAGTTGCACAAAGGACGATAGCAGACGAGTTGCAGCGGAGTTGTTTCCATCGCTTAGTTC 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GAGTTGCACAAAGGACGATAGCAGACGAGTTGCAGCGGAGTTGTTTCCATCGCTTAGTTC 710
Query 906 GCAACTTAAGAGGAAAAAGGATCATGGTCGAGCTGAAGCACTGCTCATTGCGGCGTATGG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCAACTTAAGAGGAAAAAGGATCATGGTCGAGCTGAAGCACTGCTCATTGCGGCGTATGG 770
Query 966 TGAAGCCCTTAAAACAGAGAAATTGTTGATCCAGCCA-AAGGAATTACTCTCTCAAGTTA 1024
||||||||||||||||||||| ||||||||||||||| ||| |||| | ||||| ||||
Sbjct 771 TGAAGCCCTTAAAACAGAGAAGTTGTTGATCCAGCCACAAG-AATTGGTTTCTCAGGTTA 829
Query 1025 ACTACTTAGAAAACCAGTTAGTGGAGGTTAAATAG 1059
||||| |||||||||||||||||||| ||||||||
Sbjct 830 ACTACGTAGAAAACCAGTTAGTGGAGATTAAATAG 864
Score = 457 bits (247), Expect = 1e-127
Identities = 308/336 (92%), Gaps = 9/336 (3%)
Strand=Plus/Plus
Query 79 ATGGCAACGACAGTGTACGGCCAAGCGTCGCTGCCACAGATGCATAGTCTTTTCTCAAAG 138
|||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACAACGGCGTACGGCCAACCGTCGCTGCCACAGATGCATAGTCTTTTCTCAAAG 60
Query 139 GTCAGGCC--T--TTTCTCTCTCACTCGCCGTCTTTCACAGCTCCGTTCAC-TCGTCGGC 193
|||| || | |||||||||| |||||||||||| ||||| |||||| | || || |
Sbjct 61 CTCAGACCTTTCCTTTCTCTCTC-CTCGCCGTCTTTTACAGCCCCGTTC-CGGCGGCGAC 118
Query 194 -GGAGTTTCCCGTTTAGTGCTCTTCCTACGACGAAAGCCATAGACGCGGCGTTAATGAAG 252
||| |||| |||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 119 GGGA-TTTCTCGTTTAGTGCTCTTCCAACGACGAAAGCTATTGACGCGGCGTTAATGAAG 177
Query 253 GAGAAATGGTTGGATtctctctctctcACCTCACAAGACGAAGATACGACTCCGGAGAAT 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAGAAATGGTTGGATTCTCTCTCTCTCACCTCACAAGACGAAGATACGACTCCGGAGAAT 237
Query 313 GCTGAGTCAAGCTGTATCATTGGGATTGACCCTGATTTGTCTGGTGCGTTGGCTCTTTTG 372
|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GCTGAGTCAAACTGCATCATTGGGGTTGACCCTGATTTGTCTGGTGCGTTGGCTCTTTTG 297
Query 373 AAATTTGACCACTTGGGTTCTTCTTCTTTTGCTCAG 408
|||||||||||||||||||||||||||| |||||||
Sbjct 298 AAATTTGACCACTTGGGTTCTTCTTCTTCTGCTCAG 333
Score = 252 bits (136), Expect = 5e-66
Identities = 152/160 (95%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 568 GTTTATGATACACCTCACATTCCAGTTTTAGTTGGGAAAAGAGTAAGAAAACGTTTGGAT 627
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 334 GTTTATGATACACCTCACATCCCAGTTTTAGTTGGGAAAAGAGTGAGAAAACGTTTGGAT 393
Query 628 GCAAAGTCAATTGTACAATTGATTCAGAGCTTAGATGTTCCCTCAGGAAGCAGAGTGTAT 687
|||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 394 GCAAAGTCAATTGTTCAATTGATTCAGAGTTTAGATGTTCCTTCTGGAAGCAGAGTATAT 453
Query 688 ATAGAACAATCGAATCCGTTTCCCAAAGATGGAAAACAGG 727
||||||||||||||||||||||| ||||||||||||||||
Sbjct 454 ATAGAACAATCGAATCCGTTTCCAAAAGATGGAAAACAGG 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5