BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26850.1 Length=1566 Score E Sequences producing significant alignments: (Bits) Value Ahg933004 jgi|Araly1|933004|scaffold_400992.1 1679 0.0 Ahg482182 jgi|Araly1|482182|fgenesh2_kg.4__1242__AT2G32560.1 1166 0.0 Ahg897856 jgi|Araly1|897856|Al_scaffold_0005_1822 52.8 7e-06 > Ahg933004 jgi|Araly1|933004|scaffold_400992.1 Length=1156 Score = 1679 bits (909), Expect = 0.0 Identities = 1066/1143 (93%), Gaps = 6/1143 (1%) Strand=Plus/Plus Query 331 ACACAAATAGTACCTTCTAAATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCTTCT 390 ||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 1 ACAAAAATAGTACTTTCTAAATGCTTCTCTACTTACTCATCACTTGTCTCTCTTTTTTCT 60 Query 391 TCTTTTCCAAATCTTTATCCTTTCCTCAATGGGCATCTAAAACCAAAAATTTGCTCTCCT 450 ||||| ||||||||||| || |||||| ||||| |||||||||||||| ||||| ||||| Sbjct 61 TCTTTGCCAAATCTTTACCCCTTCCTCCATGGGTATCTAAAACCAAAACTTTGCACTCCT 120 Query 451 TCTACTTCTCCAAGTA-TTTGTTTACAAACAGTCTACA-CCAGATCACACCCGATCTAGC 508 |||||||||||||| | ||| ||||| ||||||||||| ||| | ||||||||||||||| Sbjct 121 TCTACTTCTCCAAGAACTTT-TTTACGAACAGTCTACACCCA-ACCACACCCGATCTAGC 178 Query 509 CTCTCCGGTGCTCGGAAAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACTGCAT 568 ||||||||||||||| ||||||| || |||||||||||||||||||| ||||| ||||| Sbjct 179 CTCTCCGGTGCTCGGCCAAATGTCGATACTTGACCTCCCTGACCTTCCTCTCGATTGCAT 238 Query 569 TCTTGAAC-TTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGTTAA 627 ||||| || |||| ||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 239 TCTTG-ACAATCTTTCACCCTCTGGACTATGTAGCATGGCTAGGGTCTGTAGCTCGTTAA 297 Query 628 GAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAAAAA 687 ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| Sbjct 298 GAGAGAGATGTGTAAGTGATCATCTGTGGGAGAAACACTTGAAGACAAAATGGGGAAAAA 357 Query 688 TCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTCCATATCATCTCG 747 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 358 TCCTTGGACCTTCTGCTCACAAAGAGTGGCAATGCTATCTCTCTTCTCCATATCATCTTG 417 Query 748 ATTCTCCTCATCACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTATGCGAT 807 |||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| |||| Sbjct 418 ATTCTCCTCATCACCAAACTAGTCATCATGGATTGACCAAAATCATATCTCTTATTCGAT 477 Query 808 CGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAGATATCCATCTTCAATCCCTC 867 | |||||||| ||||| |||||||| ||||||| ||||||||||||||||| || |||| Sbjct 478 CTCTTTCATCGATTTTAGGAGATGATAATCATAGAAGGAGATATCCATCTTCTATTCCTC 537 Query 868 TTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTCCAGCTC 927 |||| |||||||||| ||||||||| ||||| ||||||||||| |||||||| ||||||| Sbjct 538 TTGATTCTACCATGAGCTTCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTC 597 Query 928 AAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGC 987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 AAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGC 657 Query 988 TCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAAAAGAG 1047 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 658 TCAGCTATGACACCCACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAGAAGAG 717 Query 1048 CAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTGATGCAT 1107 |||||||| ||||||| || ||||||||||| |||||||||||||||||| ||||||||| Sbjct 718 CAATTGCGATTGAAAAGGATGTGACATGGGAAAGGATAAGAGCAGCTCCCATTGATGCAT 777 Query 1108 CACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACCACATAG 1167 |||| ||| ||||||||||||||||||||||||| || |||||||| ||||| ||||||| Sbjct 778 CACCTCATCATCTCTATGTGTCAGATTCTCTAAACGAATTAAAACCTGGAGATCACATAG 837 Query 1168 AGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGAC 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGAC 897 Query 1228 ACATGGAATCTTGTGATGGCAATCTAAACCATTGTCAATGCCATAATAGCGAGATGATGG 1287 || |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 898 ACTTGGAATCTTGTGATGGCAATCTTAACCATTGTCAATGCCATATTAGCGAGATGATGG 957 Query 1288 TGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGA 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGA 1017 Query 1348 GAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAAATAA 1407 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1018 GAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAGCTAA 1077 Query 1408 ATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAGG 1467 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 AATGTAAAGAAGATATAGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAGG 1137 Query 1468 ATG 1470 ||| Sbjct 1138 ATG 1140 > Ahg482182 jgi|Araly1|482182|fgenesh2_kg.4__1242__AT2G32560.1 Length=1357 Score = 1166 bits (631), Expect = 0.0 Identities = 982/1152 (85%), Gaps = 22/1152 (2%) Strand=Plus/Plus Query 329 CAACACAAATAGTACCT-TCTAAATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCT 387 |||||| |||| || || ||||||||||||| ||||| |||||||||||||||||||||| Sbjct 6 CAACAC-AATAATA-CTGTCTAAATGCTTCTCTACTTTCTCATCACTTGTCTCTCTTTCT 63 Query 388 TCTTCTTTTCCAAATCTTTATCCT-TTCCTCAATGGGCATCTAAAACCAAAAATTTGCTC 446 | |||||| |||||||| ||| || |||||| |||||||||| ||||||||| |||||| Sbjct 64 TTTTCTTTACCAAATCTCTAT-CTCTTCCTCCATGGGCATCTGAAACCAAAACCTTGCTC 122 Query 447 TCCTTCTACTTC-TCCAAGTATTTGTTTACAAACAGTCTACACCAGATCACACCCGATCT 505 |||||||||||| | |||| || || | || | ||||| |||| ||||| ||||| Sbjct 123 TCCTTCTACTTCAT-CAAGAATCCCTTCATGAATACCCTACATCAGACCACACACGATCC 181 Query 506 AGCCTCTCCGGTGCTCGGA-AAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACT 564 ||||||||||||| || || ||||||| |||||||||||||||| || | || |||| Sbjct 182 AGCCTCTCCGGTGATC-GACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240 Query 565 GCATTCTTGAACTTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGT 624 ||||||| || |||||||||||||||| ||| || | |||||||||||| |||||||| | Sbjct 241 GCATTCTCGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300 Query 625 TAAGAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAA 684 | || ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||| | Sbjct 301 TGAGGGAGAGATGTGTGAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360 Query 685 AAATCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTC-CATATCAT 743 |||| ||||| ||| ||||||||| ||| |||||||||| | | ||||| | |||||||| Sbjct 361 AAATTCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTTTATCTCTTC-CACATATCAT 419 Query 744 CTCGATTCTCCTCATC-ACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTAT 802 || ||||||||||||| || ||||| | |||||||||| ||||||||| | ||||| || Sbjct 420 CTTGATTCTCCTCATCAAC-AAACTGGGAATCTTGGTTTTGCCAAAATCGTTTCTCTGAT 478 Query 803 GCGATCGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAG-ATATCCATCTTCAA 861 ||||||||||||||| |||||||||||||| | || |||||| | |||| ||||||| Sbjct 479 CCGATCGCTTTCATCCGTTTTTCGAGATGATAAACAAAGGAGG-GTATATTCATCTTCTC 537 Query 862 TCCCTCTTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTC 921 | || ||||| || | ||||| || |||||| ||||| ||||||||||| |||||||| | Sbjct 538 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 597 Query 922 CAGCTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATG 981 | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 598 CTGCTCAAGTCTACAACCGTGAGAATGGGCATGTAGGGTTCATGTTGTCATGCTATGATG 657 Query 982 CTGAGCTCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTA 1041 | |||||||||||||| ||| ||||| ||||||| | ||| ||||||||||||||||||| Sbjct 658 CCGAGCTCAGCTATGATACTCACACTGATACTTTCCTAGCCAGGTATCCACCACATGGTA 717 Query 1042 AAAGAGCAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTG 1101 | ||||| |||||||||||| | ||||||||||| || ||||||| ||||||| ||| Sbjct 718 GACGAGCAGCTGCGGTTGAAAAGGGTGTGACATGGGATAGAATAAGAGAAGCTCCCATTG 777 Query 1102 ATGCATCACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACC 1161 ||||||| || ||| |||||||||||||||||||| |||| || |||||||| ||||| | Sbjct 778 ATGCATCGCCTCATCATCTCTATGTGTCAGATTCTTTAAAAGAATTAAAACCTGGAGATC 837 Query 1162 ACATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTG 1221 |||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| Sbjct 838 ACATCGAGATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTGTTG 897 Query 1222 TTGGACACATGGAATCTTGTGATGGCA-ATCTAAACCATTGTCAATGCCATAAT-AGCGA 1279 |||| || ||||||| |||||||| | |||| |||||||| || ||||| | | ||||| Sbjct 898 TTGGCCATTTGGAATCCTGTGATGG-AGATCTCAACCATTGCCATTGCCA-ACTTAGCGA 955 Query 1280 GATGATGGTGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGAT 1339 || | | |||||| |||| |||||||||||||||||||| |||||||||| ||||||| | Sbjct 956 GACGGTAGTGTTGAAATTCAACCAGTACACAGTCGGATCGAGGTGGAGAAGAACGATGGT 1015 Query 1340 TAACAGGAGAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCG 1399 | |||||||||||| |||| ||||||| || ||||||||||||||||||||||| || Sbjct 1016 GA---GGAGAGATCATAAAGAGGAAGGTAATGAAGAAGACGGGTTCTATGGAGGAATCCG 1072 Query 1400 AAAAATAAATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTT 1459 ||| |||||||||||||||| |||| |||||||||||||| ||||| | ||||||||| Sbjct 1073 AAAGCTAAATTGTAAAGAAGAGATTGCAATGTGGAAGCGTCACTGGCCTTGCTCCATCTT 1132 Query 1460 GGAGTAGGATGA 1471 ||| ||| |||| Sbjct 1133 GGAATAGCATGA 1144 > Ahg897856 jgi|Araly1|897856|Al_scaffold_0005_1822 Length=942 Score = 52.8 bits (28), Expect = 7e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 83 TCCTCCTCCTCCTCTTCTTCTTCCTCAT 110 |||||||||||||||||||||||||||| Sbjct 431 TCCTCCTCCTCCTCTTCTTCTTCCTCAT 404 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58658977300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5