BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26850.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933004 jgi|Araly1|933004|scaffold_400992.1 1679 0.0
Ahg482182 jgi|Araly1|482182|fgenesh2_kg.4__1242__AT2G32560.1 1166 0.0
Ahg897856 jgi|Araly1|897856|Al_scaffold_0005_1822 52.8 7e-06
> Ahg933004 jgi|Araly1|933004|scaffold_400992.1
Length=1156
Score = 1679 bits (909), Expect = 0.0
Identities = 1066/1143 (93%), Gaps = 6/1143 (1%)
Strand=Plus/Plus
Query 331 ACACAAATAGTACCTTCTAAATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCTTCT 390
||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1 ACAAAAATAGTACTTTCTAAATGCTTCTCTACTTACTCATCACTTGTCTCTCTTTTTTCT 60
Query 391 TCTTTTCCAAATCTTTATCCTTTCCTCAATGGGCATCTAAAACCAAAAATTTGCTCTCCT 450
||||| ||||||||||| || |||||| ||||| |||||||||||||| ||||| |||||
Sbjct 61 TCTTTGCCAAATCTTTACCCCTTCCTCCATGGGTATCTAAAACCAAAACTTTGCACTCCT 120
Query 451 TCTACTTCTCCAAGTA-TTTGTTTACAAACAGTCTACA-CCAGATCACACCCGATCTAGC 508
|||||||||||||| | ||| ||||| ||||||||||| ||| | |||||||||||||||
Sbjct 121 TCTACTTCTCCAAGAACTTT-TTTACGAACAGTCTACACCCA-ACCACACCCGATCTAGC 178
Query 509 CTCTCCGGTGCTCGGAAAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACTGCAT 568
||||||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||
Sbjct 179 CTCTCCGGTGCTCGGCCAAATGTCGATACTTGACCTCCCTGACCTTCCTCTCGATTGCAT 238
Query 569 TCTTGAAC-TTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGTTAA 627
||||| || |||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 239 TCTTG-ACAATCTTTCACCCTCTGGACTATGTAGCATGGCTAGGGTCTGTAGCTCGTTAA 297
Query 628 GAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAAAAA 687
||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 298 GAGAGAGATGTGTAAGTGATCATCTGTGGGAGAAACACTTGAAGACAAAATGGGGAAAAA 357
Query 688 TCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTCCATATCATCTCG 747
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 358 TCCTTGGACCTTCTGCTCACAAAGAGTGGCAATGCTATCTCTCTTCTCCATATCATCTTG 417
Query 748 ATTCTCCTCATCACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTATGCGAT 807
|||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| ||||
Sbjct 418 ATTCTCCTCATCACCAAACTAGTCATCATGGATTGACCAAAATCATATCTCTTATTCGAT 477
Query 808 CGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAGATATCCATCTTCAATCCCTC 867
| |||||||| ||||| |||||||| ||||||| ||||||||||||||||| || ||||
Sbjct 478 CTCTTTCATCGATTTTAGGAGATGATAATCATAGAAGGAGATATCCATCTTCTATTCCTC 537
Query 868 TTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTCCAGCTC 927
|||| |||||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 538 TTGATTCTACCATGAGCTTCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTC 597
Query 928 AAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGC 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGC 657
Query 988 TCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAAAAGAG 1047
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 TCAGCTATGACACCCACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAGAAGAG 717
Query 1048 CAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTGATGCAT 1107
|||||||| ||||||| || ||||||||||| |||||||||||||||||| |||||||||
Sbjct 718 CAATTGCGATTGAAAAGGATGTGACATGGGAAAGGATAAGAGCAGCTCCCATTGATGCAT 777
Query 1108 CACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACCACATAG 1167
|||| ||| ||||||||||||||||||||||||| || |||||||| ||||| |||||||
Sbjct 778 CACCTCATCATCTCTATGTGTCAGATTCTCTAAACGAATTAAAACCTGGAGATCACATAG 837
Query 1168 AGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGAC 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGAC 897
Query 1228 ACATGGAATCTTGTGATGGCAATCTAAACCATTGTCAATGCCATAATAGCGAGATGATGG 1287
|| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 898 ACTTGGAATCTTGTGATGGCAATCTTAACCATTGTCAATGCCATATTAGCGAGATGATGG 957
Query 1288 TGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGA 1017
Query 1348 GAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAAATAA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 GAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAGCTAA 1077
Query 1408 ATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAGG 1467
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AATGTAAAGAAGATATAGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAGG 1137
Query 1468 ATG 1470
|||
Sbjct 1138 ATG 1140
> Ahg482182 jgi|Araly1|482182|fgenesh2_kg.4__1242__AT2G32560.1
Length=1357
Score = 1166 bits (631), Expect = 0.0
Identities = 982/1152 (85%), Gaps = 22/1152 (2%)
Strand=Plus/Plus
Query 329 CAACACAAATAGTACCT-TCTAAATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCT 387
|||||| |||| || || ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 6 CAACAC-AATAATA-CTGTCTAAATGCTTCTCTACTTTCTCATCACTTGTCTCTCTTTCT 63
Query 388 TCTTCTTTTCCAAATCTTTATCCT-TTCCTCAATGGGCATCTAAAACCAAAAATTTGCTC 446
| |||||| |||||||| ||| || |||||| |||||||||| ||||||||| ||||||
Sbjct 64 TTTTCTTTACCAAATCTCTAT-CTCTTCCTCCATGGGCATCTGAAACCAAAACCTTGCTC 122
Query 447 TCCTTCTACTTC-TCCAAGTATTTGTTTACAAACAGTCTACACCAGATCACACCCGATCT 505
|||||||||||| | |||| || || | || | ||||| |||| ||||| |||||
Sbjct 123 TCCTTCTACTTCAT-CAAGAATCCCTTCATGAATACCCTACATCAGACCACACACGATCC 181
Query 506 AGCCTCTCCGGTGCTCGGA-AAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACT 564
||||||||||||| || || ||||||| |||||||||||||||| || | || ||||
Sbjct 182 AGCCTCTCCGGTGATC-GACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240
Query 565 GCATTCTTGAACTTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGT 624
||||||| || |||||||||||||||| ||| || | |||||||||||| |||||||| |
Sbjct 241 GCATTCTCGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300
Query 625 TAAGAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAA 684
| || ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||| |
Sbjct 301 TGAGGGAGAGATGTGTGAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360
Query 685 AAATCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTC-CATATCAT 743
|||| ||||| ||| ||||||||| ||| |||||||||| | | ||||| | ||||||||
Sbjct 361 AAATTCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTTTATCTCTTC-CACATATCAT 419
Query 744 CTCGATTCTCCTCATC-ACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTAT 802
|| ||||||||||||| || ||||| | |||||||||| ||||||||| | ||||| ||
Sbjct 420 CTTGATTCTCCTCATCAAC-AAACTGGGAATCTTGGTTTTGCCAAAATCGTTTCTCTGAT 478
Query 803 GCGATCGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAG-ATATCCATCTTCAA 861
||||||||||||||| |||||||||||||| | || |||||| | |||| |||||||
Sbjct 479 CCGATCGCTTTCATCCGTTTTTCGAGATGATAAACAAAGGAGG-GTATATTCATCTTCTC 537
Query 862 TCCCTCTTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTC 921
| || ||||| || | ||||| || |||||| ||||| ||||||||||| |||||||| |
Sbjct 538 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 597
Query 922 CAGCTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATG 981
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 CTGCTCAAGTCTACAACCGTGAGAATGGGCATGTAGGGTTCATGTTGTCATGCTATGATG 657
Query 982 CTGAGCTCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTA 1041
| |||||||||||||| ||| ||||| ||||||| | ||| |||||||||||||||||||
Sbjct 658 CCGAGCTCAGCTATGATACTCACACTGATACTTTCCTAGCCAGGTATCCACCACATGGTA 717
Query 1042 AAAGAGCAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTG 1101
| ||||| |||||||||||| | ||||||||||| || ||||||| ||||||| |||
Sbjct 718 GACGAGCAGCTGCGGTTGAAAAGGGTGTGACATGGGATAGAATAAGAGAAGCTCCCATTG 777
Query 1102 ATGCATCACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACC 1161
||||||| || ||| |||||||||||||||||||| |||| || |||||||| ||||| |
Sbjct 778 ATGCATCGCCTCATCATCTCTATGTGTCAGATTCTTTAAAAGAATTAAAACCTGGAGATC 837
Query 1162 ACATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTG 1221
|||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 838 ACATCGAGATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTGTTG 897
Query 1222 TTGGACACATGGAATCTTGTGATGGCA-ATCTAAACCATTGTCAATGCCATAAT-AGCGA 1279
|||| || ||||||| |||||||| | |||| |||||||| || ||||| | | |||||
Sbjct 898 TTGGCCATTTGGAATCCTGTGATGG-AGATCTCAACCATTGCCATTGCCA-ACTTAGCGA 955
Query 1280 GATGATGGTGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGAT 1339
|| | | |||||| |||| |||||||||||||||||||| |||||||||| ||||||| |
Sbjct 956 GACGGTAGTGTTGAAATTCAACCAGTACACAGTCGGATCGAGGTGGAGAAGAACGATGGT 1015
Query 1340 TAACAGGAGAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCG 1399
| |||||||||||| |||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 1016 GA---GGAGAGATCATAAAGAGGAAGGTAATGAAGAAGACGGGTTCTATGGAGGAATCCG 1072
Query 1400 AAAAATAAATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTT 1459
||| |||||||||||||||| |||| |||||||||||||| ||||| | |||||||||
Sbjct 1073 AAAGCTAAATTGTAAAGAAGAGATTGCAATGTGGAAGCGTCACTGGCCTTGCTCCATCTT 1132
Query 1460 GGAGTAGGATGA 1471
||| ||| ||||
Sbjct 1133 GGAATAGCATGA 1144
> Ahg897856 jgi|Araly1|897856|Al_scaffold_0005_1822
Length=942
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 83 TCCTCCTCCTCCTCTTCTTCTTCCTCAT 110
||||||||||||||||||||||||||||
Sbjct 431 TCCTCCTCCTCCTCTTCTTCTTCCTCAT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5