BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26870.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481562 jgi|Araly1|481562|fgenesh2_kg.4__622__AT2G26870.1 2567 0.0
> Ahg481562 jgi|Araly1|481562|fgenesh2_kg.4__622__AT2G26870.1
Length=1621
Score = 2567 bits (1390), Expect = 0.0
Identities = 1513/1573 (96%), Gaps = 6/1573 (0%)
Strand=Plus/Plus
Query 1 CCAAAACAAAATGTCTATTAAAGCATTTGCTTTGATTCAACTACTATCCGTCACGATTTT 60
||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||| |||||
Sbjct 1 CCAAAACAACATGTCTATTAAAACATTTGCTTTGCTTCAACTACTAGCCGTCACAATTTT 60
Query 61 ATACAACCATGTTCATGCAACAAGTCCGATCAAAACCATCGTAGTTGTGGTGATGGAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATACAACCATGTTCATGCAACAAGTCCGATCAAAACCATCGTAGTTGTGGTGATGGAAAA 120
Query 121 TAGATCTTTCGATCACATGCTTGGATGGATGAAGAAACTAAACCCGGAGATCAACGGTGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGATCGTTCGATCACATGCTTGGATGGATGAAGAAACTAAACCCGGAGATCAACGGTGT 180
Query 181 GGACGGGTCGGAGTCAAACCCGGTCTCGGTGTCGGACCCTTCCTCTAGAAAAATAAAATT 240
|||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||
Sbjct 181 TGACGGGTCGGAGTCAAACCCGGTCTCAGCGTCGGACCCTTCCTCTAAAAAAATCAAATT 240
Query 241 CGGGTCAGGTTCGCATTACGTAGATCCGGACCCTGGTCATTCGTTTCAAGCGATAAGAGA 300
|||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 241 CGGGTCGGGTTCGCATTACGTAGATCCAGACCCGGGTCATTCGTTTCAAGCAATAAGGGA 300
Query 301 GCAAGTATTCGGGTCAAATGATACATCAATGGATCCTCCACCGATGAACGGGTTTGTTCA 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GCAAGTATTCGGGTCAAATGATACATCCATGGATCCTCCACCGATGAACGGGTTTGTTCA 360
Query 361 ACAAGCATATTCCGAGGACCCTAGTGGTAACATGTCGGCAAGTGTTATGAATGGATTT-G 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 361 ACAAGCATATTCCGAGGACCCTAGTGGTAACATGTCGGCAAGTGTTATGAATGG-TTTCG 419
Query 420 AACCTGATAAGGTTCCTGTCTACAAGTCTCTTGTCTCCGAGTTCGCTGTTTTCGATAGAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACCTGATAAGGTTCCTGTCTACAAGTCTCTTGTCTCCGAGTTCGCTGTTTTCGATAGAT 479
Query 480 GGTTTGCATCGGTTCCATCATCGACACAGCCAAACAGAATGTTTGTACACTCAGGGACGT 539
|||| ||||||||||||||||||||||| |||||| ||||||| || |||||||||||||
Sbjct 480 GGTTCGCATCGGTTCCATCATCGACACAACCAAACCGAATGTTCGTGCACTCAGGGACGT 539
Query 540 CAGCGGGAGCCACCAGCAACAACCCTATCTCCCTTGCAAAGGGTTATCCTCAAAGAACCA 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 CAGCGGGAGCCACCAGCAACAACCCTATCTCACTTGCAAAGGGTTATCCTCAAAGAACCA 599
Query 600 TTTTCGACAATCTTGACGACGAAGAATTCTCTTTCGGTATATACTACCAGAATATTCCGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTTCGACAATCTTGACGACGAAGAATTCTCTTTCGGTATATACTACCAGAATATTCCGG 659
Query 660 CAGTATTGTTTTATCAAAGCCTAAGGAAACTCAAATACGTTTTTAAGTTCCATAGCTATG 719
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 CGGTATTGTTTTATCAAAGCCTAAGGAAACTCAAATACGTGCTTAAGTTCCATAGCTATG 719
Query 720 GGAACTCTTTTAAGGATCATGCAAAGCAA-GGCAAGCTCCCTGCCTACACTGTCATTGAG 778
|||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 720 GGAACTCTTTCAAGGATCATGCAAAG-AATGGGAAGCTCCCTGCCTACACTGTCATTGAG 778
Query 779 CAACGTTACATGGACACCCTCTTGGAACCGGCTTCTGATGATCATCCATCACATGATGTC 838
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 CAACGTTACATGGACACCCTCTTGGAACCGGCTTCTGATGATCATCCATCCCATGATGTC 838
Query 839 TACCAAGGACAGAAGTTTATAAAGGAAGTGTACGAGACCCTAAGGGCGAGCCCACAATGG 898
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 839 TACCAAGGACAGAAGTTTATAAAGGAAGTGTACGAGACCCTAAGAGCGAGCCCACAGTGG 898
Query 899 AACGAAACTTTATTGATTATCACTTACGACGAGCATGGTGGGTATTTCGATCACGTGCCC 958
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 899 AACGAAACTTTATTGATTATCACTTACGACGAGCATGGTGGATATTTTGACCACGTGCCC 958
Query 959 ACACCGGTTCGCAATGTTCCTAGTCCGGATGGTATAGTTGGACCGGATCCATTCCTATTT 1018
||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 959 ACACCCGTTCGCAATGTTCCTAGCCCGGACGGTATAGTTGGACCGGATCCGTTCCTATTT 1018
Query 1019 CAGTTTAACAGGTTAGGTATTCGTGTACCAACAATAGCAGTGTCCCCATGGATAGAGAAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAGTTTAACAGGTTAGGTATTCGTGTACCAACAATAGCAGTGTCCCCATGGATAGAGAAA 1078
Query 1079 GGAACGGTCGTACATGGACCAAACGGGTCTCCATTTCCATCGTCAGAGTACGAGCACTCT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGAACGGTCGTACATGGACCAAACGGGTCTCCATTTCCATCGTCAGAGTACGAGCACTCT 1138
Query 1139 TCAATCCCCGCGACTGTGAAGAAACTATTCAATCTATCATCGCCTTTCCTCACAAAGAGA 1198
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1139 TCAATCCCCGCGACTGTGAAGAAACTGTTCAATCTATCATCGCCTTTCCTCACAAAGAGA 1198
Query 1199 GATGAATGGGCTGGCACTTTTGAGAACATCTTACAAATCCGAAAGGAGCCTCGAACTGAT 1258
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1199 GATGAATGGGCTGGGACTTTTGAAAACATCTTACAGATCCGAAAGGAGCCTCGAACTGAT 1258
Query 1259 TGCCCCGAGACACTACCTGAACCGGTTAAGATAAGAATGGGAGAGGCAAATGAGAAAGCT 1318
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1259 TGTCCCGAGACGCTACCGGAACCGGTTAAGATAAGAATGGGAGAGGCGAATGAGAAAGCT 1318
Query 1319 CTT-TTGACTGAGTTTCAGCAAGAGCTTGTACAACTAGCTGCGGTTCTAAAAGGTGATAA 1377
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 -TTGTTGACTGAGTTTCAGCAAGAGCTTGTACAACTAGCTGCGGTTCTAAAAGGTGATAA 1377
Query 1378 TATGCTCACAACATTTCCTAAAGAAATAAGCAAAGGAATGACAGTGATTGAAGGGAAGAG 1437
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1378 TATGCTCACAACATTTCCTAAAGAAATCAGCAAAGGAATGACGGTGATTGAAGGGAAGAG 1437
Query 1438 GTACATGGAAGATGCTATGAAACGATTCTTAGAGGCTGGTCGTATGGCTCTTTCCATGGG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1438 GTACATGGAAGATGCTATGAAACGATTCTTAGAGGCTGGTCGTATGGCTCTCGCCATGGG 1497
Query 1498 AGCGAATAAAGAAGAGCTTGTCCATATGAAAACTTCCCTCACCGGAAGAAGACCTTAAGC 1557
||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||
Sbjct 1498 AGCGAATAAAGAAGAGCTTGTCCATATGAAACCTTCCCTCACCGAAAGAAGACATTAAGC 1557
Query 1558 TTCACTTCCCATT 1570
|| ||||||||||
Sbjct 1558 TTGACTTCCCATT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5