BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26880.1 Length=1194 Score E Sequences producing significant alignments: (Bits) Value Ahg344393 jgi|Araly1|344393|fgenesh1_pg.C_scaffold_4000735 797 0.0 > Ahg344393 jgi|Araly1|344393|fgenesh1_pg.C_scaffold_4000735 Length=864 Score = 797 bits (431), Expect = 0.0 Identities = 596/674 (88%), Gaps = 18/674 (3%) Strand=Plus/Plus Query 327 ATGGATATTGAATTATTTCTAAATGAGAAGACAAATAAGGTTAATGAAAAGTTGATAAAG 386 |||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGGATGTCGAATTATATCTAAATGAGAAGACAAATAAGGTTAATGAAAAAATGATAAAG 60 Query 387 AGTTGT-AAGAAGAATAAAGAGTATGTCAGTAATGAGTTGATGATGCAACTACAACGCGG 445 |||||| || |||| |||||||||||||| ||||||||||||||||||| | |||| Sbjct 61 AGTTGTCAA-AAGAGTAAAGAGTATGTCACTAATGAGTTGATGATGCAA-T-----GCGG 113 Query 446 TCGTAGAATCCATGATCTTAACTTAAGTGAGATCTATACATTACTATCTTACTCAAGGGA 505 ||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 114 TCGTACAATCAATGCTCTTAACTTAAGTGAGATCTATACATTACTATCTTTCTCAAGGGA 173 Query 506 AACTATCATGTCTTTTAGGAAGAAGTTTGATTTCATGCAGCATTCTCCTCTTCGTGATCC 565 |||||||| ||| ||||||||||| | |||||||||||| ||||||||||||||||| Sbjct 174 TACTATCATATCTCTTAGGAAGAAGCTAGATTTCATGCAGTTTTCTCCTCTTCGTGATCT 233 Query 566 ACCGGTGCTTCCATTCGAGGTGCAAGTCGAACAGTTTAAGAGCACCACTAAGGACGCTTT 625 ||| ||||||||||| || |||||||||||||||||||| |||||| || || ||||| Sbjct 234 ACCTGTGCTTCCATTTGAAACGCAAGTCGAACAGTTTAAGATCACCACAAATGATGCTTT 293 Query 626 TTTAGGGGGTGATCTAGACGTTGAGAGAGCTAGGAACACAAATGAAGCAACAAGAAT-AA 684 ||||| ||||||| ||| | |||||||||| ||||||| ||||||||||||| ||| || Sbjct 294 CTTAGGAGGTGATCAAGATGATGAGAGAGCTGGGAACACGAATGAAGCAACAAAAATGAA 353 Query 685 TTAACATTGATAGTTTAAGGGAGAATAAAAGTTATTACTTAATAGATCAATGGTTTCCAA 744 | |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| Sbjct 354 T-AACATTGATAGTTTAAGGAAGAATAAAAGTTATTACTTAATTGAACAATGGTTTCCAA 412 Query 745 CA-CCTGAACCGCCTAAACCTGTAACATACCAGCAAATTGGGTATGAAACTTCAAACCGT 803 || || |||||||||||||||||| ||||||||||||||||||||||| | |||||||| Sbjct 413 CATCCA-AACCGCCTAAACCTGTAATATACCAGCAAATTGGGTATGAAAATCCAAACCGT 471 Query 804 AGAGGCTACAATCCATACCA-AGGAAGTAGTAGCAATGGGAACCCTAATTTCGAGATGAT 862 ||||||||| |||||||||| | ||| ||||||||||||||||||||||| |||| ||| Sbjct 472 AGAGGCTACTATCCATACCATAA-AAGCAGTAGCAATGGGAACCCTAATTTGGAGACGAT 530 Query 863 GTCAGTTT-CCCCGAAGTGATGACTTTCCAGGGTT-CGGTTGGATCTACCTCTCAACCAT 920 |||||||| |||| |||||||||||||| ||| || || |||||||| |||||||||||| Sbjct 531 GTCAGTTTGCCCCCAAGTGATGACTTTCAAGGATTTCG-TTGGATCTGCCTCTCAACCAT 589 Query 921 TACAACATCAAAACATGAATAAGAATCCAATAGTGGCTATGAATCAACCAAGCCAATACC 980 |||||||||| |||||||| || |||||||| |||| |||||||||||| || |||||| Sbjct 590 TACAACATCAGAACATGAAAAATAATCCAATTGTGGGTATGAATCAACCTAGAAAATACC 649 Query 981 CTTTTGATTT-ATG 993 |||||||||| ||| Sbjct 650 CTTTTGATTTCATG 663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44565689973 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5