BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26880.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344393 jgi|Araly1|344393|fgenesh1_pg.C_scaffold_4000735 797 0.0
> Ahg344393 jgi|Araly1|344393|fgenesh1_pg.C_scaffold_4000735
Length=864
Score = 797 bits (431), Expect = 0.0
Identities = 596/674 (88%), Gaps = 18/674 (3%)
Strand=Plus/Plus
Query 327 ATGGATATTGAATTATTTCTAAATGAGAAGACAAATAAGGTTAATGAAAAGTTGATAAAG 386
|||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGATGTCGAATTATATCTAAATGAGAAGACAAATAAGGTTAATGAAAAAATGATAAAG 60
Query 387 AGTTGT-AAGAAGAATAAAGAGTATGTCAGTAATGAGTTGATGATGCAACTACAACGCGG 445
|||||| || |||| |||||||||||||| ||||||||||||||||||| | ||||
Sbjct 61 AGTTGTCAA-AAGAGTAAAGAGTATGTCACTAATGAGTTGATGATGCAA-T-----GCGG 113
Query 446 TCGTAGAATCCATGATCTTAACTTAAGTGAGATCTATACATTACTATCTTACTCAAGGGA 505
||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 114 TCGTACAATCAATGCTCTTAACTTAAGTGAGATCTATACATTACTATCTTTCTCAAGGGA 173
Query 506 AACTATCATGTCTTTTAGGAAGAAGTTTGATTTCATGCAGCATTCTCCTCTTCGTGATCC 565
|||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 174 TACTATCATATCTCTTAGGAAGAAGCTAGATTTCATGCAGTTTTCTCCTCTTCGTGATCT 233
Query 566 ACCGGTGCTTCCATTCGAGGTGCAAGTCGAACAGTTTAAGAGCACCACTAAGGACGCTTT 625
||| ||||||||||| || |||||||||||||||||||| |||||| || || |||||
Sbjct 234 ACCTGTGCTTCCATTTGAAACGCAAGTCGAACAGTTTAAGATCACCACAAATGATGCTTT 293
Query 626 TTTAGGGGGTGATCTAGACGTTGAGAGAGCTAGGAACACAAATGAAGCAACAAGAAT-AA 684
||||| ||||||| ||| | |||||||||| ||||||| ||||||||||||| ||| ||
Sbjct 294 CTTAGGAGGTGATCAAGATGATGAGAGAGCTGGGAACACGAATGAAGCAACAAAAATGAA 353
Query 685 TTAACATTGATAGTTTAAGGGAGAATAAAAGTTATTACTTAATAGATCAATGGTTTCCAA 744
| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 354 T-AACATTGATAGTTTAAGGAAGAATAAAAGTTATTACTTAATTGAACAATGGTTTCCAA 412
Query 745 CA-CCTGAACCGCCTAAACCTGTAACATACCAGCAAATTGGGTATGAAACTTCAAACCGT 803
|| || |||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 413 CATCCA-AACCGCCTAAACCTGTAATATACCAGCAAATTGGGTATGAAAATCCAAACCGT 471
Query 804 AGAGGCTACAATCCATACCA-AGGAAGTAGTAGCAATGGGAACCCTAATTTCGAGATGAT 862
||||||||| |||||||||| | ||| ||||||||||||||||||||||| |||| |||
Sbjct 472 AGAGGCTACTATCCATACCATAA-AAGCAGTAGCAATGGGAACCCTAATTTGGAGACGAT 530
Query 863 GTCAGTTT-CCCCGAAGTGATGACTTTCCAGGGTT-CGGTTGGATCTACCTCTCAACCAT 920
|||||||| |||| |||||||||||||| ||| || || |||||||| ||||||||||||
Sbjct 531 GTCAGTTTGCCCCCAAGTGATGACTTTCAAGGATTTCG-TTGGATCTGCCTCTCAACCAT 589
Query 921 TACAACATCAAAACATGAATAAGAATCCAATAGTGGCTATGAATCAACCAAGCCAATACC 980
|||||||||| |||||||| || |||||||| |||| |||||||||||| || ||||||
Sbjct 590 TACAACATCAGAACATGAAAAATAATCCAATTGTGGGTATGAATCAACCTAGAAAATACC 649
Query 981 CTTTTGATTT-ATG 993
|||||||||| |||
Sbjct 650 CTTTTGATTTCATG 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5