BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26900.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933010 jgi|Araly1|933010|scaffold_400998.1 1991 0.0
> Ahg933010 jgi|Araly1|933010|scaffold_400998.1
Length=1274
Score = 1991 bits (1078), Expect = 0.0
Identities = 1206/1269 (95%), Gaps = 3/1269 (0%)
Strand=Plus/Plus
Query 53 CTAAAACCCTTTTGATCAAAACATGGCTTCCATTTCCAGAATCTTACCAACAGATGGCAG 112
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 CTAAAACCCTTTCGATCACAA-ATGGCTTCCATTTCCAGAATCTTACCAACAGATGGAAG 59
Query 113 ATTAAGTCAATGCAGAATCAACACCTCGTGGGTTCCTTCTACAACCAGAACTCAAACTCA 172
|||||||||||||||||||||||| || ||||||||| |||| |||||| ||||||| ||
Sbjct 60 ATTAAGTCAATGCAGAATCAACACTTCTTGGGTTCCTACTACGACCAGACCTCAAACCCA 119
Query 173 CTTAGATTTTCCCAAGTTAGTTTCTGTTAGTAACTCTGGGATAAGTTTGAGGATTCAGAA 232
|||||||| ||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 120 CTTAGATTATCCCAAGTTGGTTTCTGTTAGTAAGTCTGGAATTAGTTTGAGGATTCAGAA 179
Query 233 TAGTAAACCTATTAGCCCTGTCTTTGCTCTTGAAGCAACTTCCTCCAGGAGGGTTGTTTG 292
||||||||| ||||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 180 TAGTAAACCCATTAGCCCTGTCTTTGCTCTTGAAGCAACAACTTCGAGGAGGGTTGCTTG 239
Query 293 CAAAGCTGCTGCTGGTGTGTCAGGTGACT-TACCTGAGAGTACTCCTAAGGAACTTAGTC 351
||||||||| | |||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 240 TAAAGCTGCTACAGGTGTGTCTGGTGA-TGTACCTGAGAGTACTCCTAAGGAACTTAGTC 298
Query 352 AGTATGAGAAGATTATTGAGCTTTTGACAACCCTTTTTCCACTTTGGGTTATTTTGGGAA 411
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 299 AGTATGAGAAGATTATTGAACTTTTGACGACCCTTTTTCCTCTTTGGGTTATTTTGGGAA 358
Query 412 CACTTGTTGGCATCTTCAAGCCATCCTTGGTTACATGGTTGGAAACAGATCTCTTTACTC 471
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 359 CACTTGTTGGCATCTTCAAGCCCTCTTTAGTTACATGGTTGGAAACAGATCTCTTTACTC 418
Query 472 TAGGTCTTGGATTTCTTATGCTTTCCATGGGTTTGACTCTTACGTTTGAAGATTTCAGAA 531
|||||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 419 TAGGTCTTGGATTTCTCATGCTTTCTATGGGATTAACTCTTACGTTTGAAGATTTTAGAA 478
Query 532 GATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGC 538
Query 592 CAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGCC 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 CAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGTC 598
Query 652 TTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCGTCAAACGTTGCTACTTACATTTCCA 711
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 599 TTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCATCTAACGTTGCTACCTACATTTCCA 658
Query 712 AGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAA 718
Query 772 TGACTCCTCTTCTTACTAAGCTTCTTGCTGGTCAGCTTGTTCCCGTTGACGCTGCTGGAC 831
||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 719 TGACTCCACTTCTCACTAAGCTTCTTGCTGGCCAGCTTGTTCCCGTTGATGCTGCTGGAC 778
Query 832 TTGCTCTTAGTACGTTCCAAGTAGTGTTGGTTCCTACCATAATTGGAGTTCTGGCAAATG 891
| ||| ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||
Sbjct 779 TCGCTATTAGTACTTTCCAAGTAGTGTTGGTGCCTACTATAGTTGGAGTTCTGGCTAATG 838
Query 892 AGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTC 898
Query 952 TGACTACTCTGCTCTGTGCCAGCCCTATTGGACAAGTTGCAGATGTTTTGAAAACCCAAG 1011
|||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 899 TGACCACTCTGCTGTGTGCCAGCCCTATTGGACAAGTTTCAGAGGTTTTGAAAACCCAAG 958
Query 1012 GAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATT 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATT 1018
Query 1072 GGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATTTCTATAGAATGTGGAA 1131
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1019 GGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATATCTATAGAATGTGGCA 1078
Query 1132 TGCAAAGTTCAGCGCTCGGGTTCTTGCTTGCACAAAAGCATTTCACAAACCCTCTAGTTG 1191
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 TGCAAAGTTCAGCGCTCGGGTTCTTACTTGCACAAAAGCATTTCACAAACCCTCTAGTTG 1138
Query 1192 CTGTTCCTTCTGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGT 1251
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTGTTCCTTCCGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGT 1198
Query 1252 TCTGGAGAAACCTACCGATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAAATGAAGT 1311
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1199 TCTGGAGAAACCTACCAATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAAATGACGT 1258
Query 1312 AGGAAAGGC 1320
|||||||||
Sbjct 1259 AGGAAAGGC 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5