BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26930.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481568 jgi|Araly1|481568|fgenesh2_kg.4__628__AT2G26930.1 1905 0.0
> Ahg481568 jgi|Araly1|481568|fgenesh2_kg.4__628__AT2G26930.1
Length=1249
Score = 1905 bits (1031), Expect = 0.0
Identities = 1159/1221 (95%), Gaps = 7/1221 (1%)
Strand=Plus/Plus
Query 10 aaaaaTAAGGTAGGAAGAAACAACAACAATGGCAACGGcttctcctccatttatctcaac 69
|||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCAGGTAGGAAG--A-AACAACAATGGCAACGGCTTCTCCTCCATTTATCTCAAC 57
Query 70 tctcagcttcactcactcttctttcaaaacttcttcttcttcttcattttctccgaagct 129
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 58 TCTCAACTTCACTCACTCTTCTTTCAAAAATACTTCTTCTTCTTCATTTTCTCCGAAGCT 117
Query 130 tcttcgacccctcttaagcttttcCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTT 189
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTTCGACCCCTTTTGAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTT 177
Query 190 TGATCCTGATGAGAGGCTTAATAAGATAGGTGATGATGTTGACAAAGAAGCTCCTTTGTC 249
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 TGATCCTGATGAGAGGCTTAATAAGATTGGTGATGATGTTGACAAAGAAGCTCCTTTGTC 237
Query 250 CAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATCACCGGAAAGCG 309
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 TAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATAACCGGAAAGCG 297
Query 310 AGAAGATGGGTTTCATGATTTAGCCTCTTTGTTTCATGTGATTAGCTTAGGAGACACTAT 369
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 298 AGAAGATGGGTTTCATGATTTAGCCTCATTGTTTCATGTGATTAGCTTAGGAGATACTAT 357
Query 370 TAAATTCTCATTGTCACCATCAAAGTCTAAAGATCGT-TTGTCTACTAACGTTCAAGGAG 428
||||||||||||||| |||||||| || ||||||||| || |||||||||||||||||||
Sbjct 358 TAAATTCTCATTGTCGCCATCAAAATCCAAAGATCGTCTT-TCTACTAACGTTCAAGGAG 416
Query 429 TCCCTGTTGATGGGAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTG 488
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCCCTGTTGATGGCAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTG 476
Query 489 GTAGTAACAGATTCTTCTGGATTCATTTAGATAAGAAGGTGCCTACCGGGGCTGGACTCG 548
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 477 GTAGTGACAGATTCTTCTGGATTCATTTAGACAAGAAGGTGCCTACCGGGGCTGGACTCG 536
Query 549 GTGGTGGAAGTAGTAATGCTGCAACTGCACTCTGGGCGGCAAATGAGCTCAATGGAGGTC 608
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 537 GTGGTGGAAGTAGTAATGCTGCAACTGCACTTTGGGCGGCAAATCAGCTCAATGGAGGTC 596
Query 609 TTGTCACTGAGAACGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCT 668
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGTCACTGAGAAGGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCT 656
Query 669 TCTTCTCGCATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCCTC 728
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TCTTTTCACATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCTTC 716
Query 729 CACCTTTTCCTCTTGATCTTCCGATGGTGCTCATAAAGCCCCGAGAAGCATGTTCCACTG 788
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 CTCCTTTTCCTCTCGATCTTCCGATGGTACTCATAAAGCCCCGAGAAGCATGTTCCACTG 776
Query 789 CTGAAGTTTACAAACGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTAC 848
|||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||
Sbjct 777 CTGAAGTTTACAAACGTCTTAGTCTAGATCAGACGAGTAACATTAATCCCTTGACATTAC 836
Query 849 TAGAGAATGTGACCAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGAACCGC 908
||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 837 TAGAGAATGTGACCAACAGTGGTGTATCTCAAAGCATTTGCGTAAACGATTTGGAACCGC 896
Query 909 CAGCGTTTTCAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGAC 968
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 897 CAGCGTTTTCAGTTCTCCCGTCTCTAAAACGCTTGAAGCAACGAATAATAGCATCTGGGC 956
Query 969 GTGGGGAATACGATGCTGTGTTTATGTCTGGGAGTGGAAGCACTATTATCGGTATTGGTT 1028
| |||||||| ||||| || ||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 957 GCGGGGAATATGATGCCGTATTTATGTCTGGGAGTGGAAGCACAATTGTCGGTATCGGTT 1016
Query 1029 CACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGTGTTCTTGTCTG 1088
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 CACCAGATCCTCCGCAATTTATATACGATGATGAAGAATACAAGAACGTGTTCTTGTCTG 1076
Query 1089 AAGCAAACTTTATGACGCGTGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATG 1148
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAGCCAACTTTATGACTCGGGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATG 1136
Query 1149 CTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGAGATGTTACAAACATGTAAT 1208
|||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1137 CTACTACCTCATCCTCTGAATCTCGCATGGATTTCCAATGAGATGTGACAAAGATGTAAT 1196
Query 1209 TTTTTGAAAGGATTGATTTGA 1229
|||| || ||||||||||||
Sbjct 1197 TTTTAGA--GGATTGATTTGA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5