BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26940.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481569 jgi|Araly1|481569|fgenesh2_kg.4__629__AT2G26940.1 1083 0.0
> Ahg481569 jgi|Araly1|481569|fgenesh2_kg.4__629__AT2G26940.1
Length=873
Score = 1083 bits (586), Expect = 0.0
Identities = 790/880 (90%), Gaps = 47/880 (5%)
Strand=Plus/Plus
Query 1 ATGAAGAGAACAAGAGACCTTTATG--G-TGATGA---ATCTTCTTCATCGGAATCTGAA 54
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 1 ATGAAGAGAACAAGAGACCTTTATGATGATGATGATTCTTCTTCTTCATCGGAATCTGAA 60
Query 55 GAGTTTCACCGGGA-AAAAATCCGGGTGAAGGTGAAGTTACCGGAAGAAAGAAGTGAAGA 113
|||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAGTTTCACC-GGACAAAACTCCGGGTTAAGGTGAAGTTACCGGAAGAAAGAAGTGAAGA 119
Query 114 TGAAGATGAGTCTCCTCAGCCTCAGAGGAAGCACTTTTGTGTGATTTGTGAGAAGCAGTT 173
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAAGATGAGTCTCCTCAGCCGCTGAGGAAGCACTTTTGTGTGATTTGTGAGAAGCAGTT 179
Query 174 TAGCTCTGGTAAGGCTTATGGTGGTCACGTGAGGATCCACTCCATTGAGTACAATAACAA 233
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 180 TAGCTCTGGTAAGGCTTATGGTGGTCACGTGAGGATCCACTCCACCGAGTACAATATCAA 239
Query 234 GGgaaagatgaagaagatgaagaagatgaagttgaagaagaagaagaagagaaagattgg 293
|||||||||||||||| || | ||||||| | | ||||||||||| || || ||||||
Sbjct 240 AGGAAAGATGAAGAAGACGA-G--GATGAAGATCATGAAGAAGAAGA-GA-AA-GATTGG 293
Query 294 tttggtgaagaaagagaaggagaaagagatagaTCTGGCTAGGACTGACGTGGAAGGTAA 353
|||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 294 TTTGTTGAAGAAAGAGAAGGAGAAAGAGATAGATCTGATTAGGGCTGACGTGGAAGGTAA 353
Query 354 GATTAGGTGTTGTCTTTGTGGAAAAGAGTTTCAAACAATGCACTCTTTGTTTGGTCATAT 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 354 GATTAGGTGTTGTCTTTGTGGAAAAGAGTTTCAAACAATGCACTCTTTGTTTGGACATAT 413
Query 414 GAGGAGACATCCTGACCGGACTTGGAAAGGGATACGACCTCCTCCACCATCGGAGAAGTT 473
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 414 GAGGAGACATCCTGACCGGAGTTGGAAAGGGATACGACCTCCTCCTCCACCGGAGAAGTT 473
Query 474 CAATCTAAGCTACT-TGgatgatgatg-tcgatgatgaagatgaggatgatgatgatgtg 531
||||||||||||| || ||||||||| | | |||||| ||||||||||| | |||| |
Sbjct 474 CAATCTAAGCTACGGTG-ATGATGATGAT-GTTGATGATGATGAGGATGA-G--GATGCG 528
Query 532 atgagtagatccatgatgatgagtgatg-T--ACCCGAGGATGTTCAGGGAGCTGCTTGC 588
|||||||||||||| ||||||||||||| | ||||||||||||||| | ||||||||||
Sbjct 529 ATGAGTAGATCCATCATGATGAGTGATGATGTACCCGAGGATGTTCAAGAAGCTGCTTGC 588
Query 589 ATTCTAATGATGCTCTCTTACGCTTCAAGAAATTACTGGGCTGGGATA--GA--G----G 640
||||||||||||||||||||||||||||| ||||| |||||||||||| || | |
Sbjct 589 ATTCTAATGATGCTCTCTTACGCTTCAAGCAATTATTGGGCTGGGATAAAGAAAGCTATG 648
Query 641 -AATCACCAAAATCCGAGGTAAGAAGTTCGAGTTTCTACAAAGATGATGAAGGAAAAGAT 699
||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 649 GAATCACCCAAATCCGAGGTAAGAAGTCCGAGTTGCTACAAAGATGACAAAGGAAAAGAT 708
Query 700 AAAGTATTAGGAGATAGTAGGA-TGGATGAAAAGAAGGGTTTGATTGTAGATATGAAGAT 758
|||| ||||| ||| || ||| ||||||| |||||| |||| |||||||||||||| |
Sbjct 709 GAAGTTTTAGGTGATGGT-GGAATGGATGATAAGAAGAGTTTAATTGTAGATATGAA--T 765
Query 759 AAAGATGGAAATGGAAGTGAAGGTGAATAGTCCTCGAGATGAAGCTAAGAGGTCATTAGG 818
| | ||| | | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 766 A----T--AAA-G-A--TGAAGGTGAATAGTCCTCGAGATGAAGATAAGAGGTCATTAGG 815
Query 819 GTTTGATCTCAATCAGCCTCCTTACCATGAAGATCATCCT 858
||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GTTTGATCTCAATCAGCCTCCTTACCATGAAGATCATCCT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5