BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26950.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320480 jgi|Araly1|320480|fgenesh1_pm.C_scaffold_4000537 630 6e-180
> Ahg320480 jgi|Araly1|320480|fgenesh1_pm.C_scaffold_4000537
Length=1044
Score = 630 bits (341), Expect = 6e-180
Identities = 605/725 (83%), Gaps = 47/725 (6%)
Strand=Plus/Plus
Query 417 ATTGAAAGGAAAGGGTTTACCAGTTTACCCTGATGAAGTTCGAGAGCAGGCGATACGTAC 476
||||||| || ||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 294 ATTGAAACGACTTGGTTTACCAGTTTACCCTGATAAAGTTCGAAAGCAGGCGATAAGTAC 353
Query 477 AGCAGCAC-AATATGGTGTAAAAG-TTGAATTATTGAATGCTCATTATAGTCAAGACTCA 534
|||| || || ||||| | |||| |||| |||||| ||| | ||||||||
Sbjct 354 AGCATTACGAA-ATGGTCT-AAAGATTGATTTATTGGATG--C-------TCAAGACTTG 402
Query 535 TTGATGGCAGGCAATGTCGAGAAACCT--C-AAGAACTCAATAACTTGGCACTCAATCAA 591
||||||| || || |||||||||||| | | ||||||||||||| |||||||||||
Sbjct 403 TTGATGGTAGATAACGTCGAGAAACCTGACGCGGCACTCAATAACTTGCCACTCAATCAA 462
Query 592 TGTTCTCCGTATTACCAGTCAACGCTTGCCAATGTTCAGCCTAGCCGCAATCGCGTTATG 651
| |||| | || |||||||||| ||||||||||||||||||| | | |
Sbjct 463 TTTTCTTCATACTACCAGTCAATGCTTGCCAATGTTCAGCCT-------A----G----G 507
Query 652 GAACCAGAAACAACATTTCCTTTCACGGGTGGATCTGCCATGAACGAGCAAAACCCT-AC 710
||||||||||| |||||||||||||| ||| | || ||||||||||||||||||| ||
Sbjct 508 GAACCAGAAACCACATTTCCTTTCACAAATGGGTATGTCATGAACGAGCAAAACCCTAAC 567
Query 711 TCTCTTGTGTAATCCTTACGTGGAGAGCACTCAAGAACAGTTACCTGACAGCCATTTGTT 770
|||||| | ||| || |||||| |||||||||||||| |||||||||| |||||||||
Sbjct 568 -CTCTTGAATTATCTTTCCGTGGATAGCACTCAAGAACAATTACCTGACATCCATTTGTT 626
Query 771 TGGAAATGTTACATATTCTTCTCCTCCTATGCCTCTCATTCACGAGGTTGAGAACTTGGA 830
||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 627 TGGCAATGCTACATGTTCTTCTCCTCCTATGCCTCTCATTCACGGGGTTGGGAACTTGGA 686
Query 831 GCTCCCTTCATTCCAAGGCTTTGATTTTCATGAAGAGCCTAGCAGTTTTGGAGCAGAACA 890
|||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||
Sbjct 687 GCTCCCTTCATTCCAAGGATTTAATGCTCATGAAGTGCCTAGCAGTTTTGGAGCAGAACA 746
Query 891 ATATAACCCAATGCTGAATCTTGAGCCACACAACACTTTGGTCCAGTCTCCTCTGATAGG 950
||||||||||||| |||||||||||||| ||||||||||||| ||| | ||| |||||||
Sbjct 747 ATATAACCCAATGATGAATCTTGAGCCAGACAACACTTTGGTTCAGCCCCCTTTGATAGG 806
Query 951 CCAGACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGATGAATTGTTGGA 1010
||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 807 CCAAACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGA--A-T------- 856
Query 1011 ATCAGTTGTTAACGGTTCATTAGGAGAAATACCGAAAACCGATACCAGTTCGGAG-TCCC 1069
|||||||| | |||||| ||||||||| |||||||||||||||||| |||||| ||||
Sbjct 857 --CAGTTGTTTATGGTTCAGTAGGAGAAAGACCGAAAACCGATACCAGCTCGGAGCTCCC 914
Query 1070 AACTGTTTCAGTCCTCTCTACGTAGCCATACCGATGCTACACCAGACATTGCAAACACAA 1129
| || |||| |||||| |||| |||||||||||| | ||||||| ||||||||||||||
Sbjct 915 ACCT-TTTCCGTCCTCCCTACTTAGCCATACCGAGGTTACACCACCCATTGCAAACACAA 973
Query 1130 CTGGT 1134
||||
Sbjct 974 TTGGT 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5