BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26950.1 Length=1212 Score E Sequences producing significant alignments: (Bits) Value Ahg320480 jgi|Araly1|320480|fgenesh1_pm.C_scaffold_4000537 630 6e-180 > Ahg320480 jgi|Araly1|320480|fgenesh1_pm.C_scaffold_4000537 Length=1044 Score = 630 bits (341), Expect = 6e-180 Identities = 605/725 (83%), Gaps = 47/725 (6%) Strand=Plus/Plus Query 417 ATTGAAAGGAAAGGGTTTACCAGTTTACCCTGATGAAGTTCGAGAGCAGGCGATACGTAC 476 ||||||| || ||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 294 ATTGAAACGACTTGGTTTACCAGTTTACCCTGATAAAGTTCGAAAGCAGGCGATAAGTAC 353 Query 477 AGCAGCAC-AATATGGTGTAAAAG-TTGAATTATTGAATGCTCATTATAGTCAAGACTCA 534 |||| || || ||||| | |||| |||| |||||| ||| | |||||||| Sbjct 354 AGCATTACGAA-ATGGTCT-AAAGATTGATTTATTGGATG--C-------TCAAGACTTG 402 Query 535 TTGATGGCAGGCAATGTCGAGAAACCT--C-AAGAACTCAATAACTTGGCACTCAATCAA 591 ||||||| || || |||||||||||| | | ||||||||||||| ||||||||||| Sbjct 403 TTGATGGTAGATAACGTCGAGAAACCTGACGCGGCACTCAATAACTTGCCACTCAATCAA 462 Query 592 TGTTCTCCGTATTACCAGTCAACGCTTGCCAATGTTCAGCCTAGCCGCAATCGCGTTATG 651 | |||| | || |||||||||| ||||||||||||||||||| | | | Sbjct 463 TTTTCTTCATACTACCAGTCAATGCTTGCCAATGTTCAGCCT-------A----G----G 507 Query 652 GAACCAGAAACAACATTTCCTTTCACGGGTGGATCTGCCATGAACGAGCAAAACCCT-AC 710 ||||||||||| |||||||||||||| ||| | || ||||||||||||||||||| || Sbjct 508 GAACCAGAAACCACATTTCCTTTCACAAATGGGTATGTCATGAACGAGCAAAACCCTAAC 567 Query 711 TCTCTTGTGTAATCCTTACGTGGAGAGCACTCAAGAACAGTTACCTGACAGCCATTTGTT 770 |||||| | ||| || |||||| |||||||||||||| |||||||||| ||||||||| Sbjct 568 -CTCTTGAATTATCTTTCCGTGGATAGCACTCAAGAACAATTACCTGACATCCATTTGTT 626 Query 771 TGGAAATGTTACATATTCTTCTCCTCCTATGCCTCTCATTCACGAGGTTGAGAACTTGGA 830 ||| |||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 627 TGGCAATGCTACATGTTCTTCTCCTCCTATGCCTCTCATTCACGGGGTTGGGAACTTGGA 686 Query 831 GCTCCCTTCATTCCAAGGCTTTGATTTTCATGAAGAGCCTAGCAGTTTTGGAGCAGAACA 890 |||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||| Sbjct 687 GCTCCCTTCATTCCAAGGATTTAATGCTCATGAAGTGCCTAGCAGTTTTGGAGCAGAACA 746 Query 891 ATATAACCCAATGCTGAATCTTGAGCCACACAACACTTTGGTCCAGTCTCCTCTGATAGG 950 ||||||||||||| |||||||||||||| ||||||||||||| ||| | ||| ||||||| Sbjct 747 ATATAACCCAATGATGAATCTTGAGCCAGACAACACTTTGGTTCAGCCCCCTTTGATAGG 806 Query 951 CCAGACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGATGAATTGTTGGA 1010 ||| |||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 807 CCAAACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGA--A-T------- 856 Query 1011 ATCAGTTGTTAACGGTTCATTAGGAGAAATACCGAAAACCGATACCAGTTCGGAG-TCCC 1069 |||||||| | |||||| ||||||||| |||||||||||||||||| |||||| |||| Sbjct 857 --CAGTTGTTTATGGTTCAGTAGGAGAAAGACCGAAAACCGATACCAGCTCGGAGCTCCC 914 Query 1070 AACTGTTTCAGTCCTCTCTACGTAGCCATACCGATGCTACACCAGACATTGCAAACACAA 1129 | || |||| |||||| |||| |||||||||||| | ||||||| |||||||||||||| Sbjct 915 ACCT-TTTCCGTCCTCCCTACTTAGCCATACCGAGGTTACACCACCCATTGCAAACACAA 973 Query 1130 CTGGT 1134 |||| Sbjct 974 TTGGT 978 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45251902479 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5