BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26960.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900325 jgi|Araly1|900325|Al_scaffold_0004_975 1463 0.0
> Ahg900325 jgi|Araly1|900325|Al_scaffold_0004_975
Length=1164
Score = 1463 bits (792), Expect = 0.0
Identities = 1005/1106 (91%), Gaps = 21/1106 (2%)
Strand=Plus/Plus
Query 2 ATGGGGAAAGTTCGTCAAGATTCAGGATCAGACGATGACAA-TTCAATAAAGAAATCTTT 60
|||||||||||||| || |||||||||||||||||||| || ||||||| | ||||||||
Sbjct 1 ATGGGGAAAGTTCGCCACGATTCAGGATCAGACGATGA-AACTTCAATAGATAAATCTTT 59
Query 61 TACTAAAGGTCCTTGGACACAAGCAGAAGACAATCTTTTGATAGCTTACGTTGATAAACA 120
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 60 TACTAAAGGTCCTTGGACACAAGCAGAGGACAACCTTTTGATAGCTTATGTTGATAAACA 119
Query 121 TGGTGATGGAAACTGGAACGCTGTTC-AAAACAACTCGGGCCTTTCTCGTTGTGGTAAAA 179
|||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 120 TGGTGATGGAAACTGGAACGCTGTTCAAAAAC-ATTCAGGCCTTTCTCGTTGTGGTAAAA 178
Query 180 GTTGTCGCCTTCGTTGGGTAAATCATCTGAGACCAGATTTGAAAAAAGGCGCTTTTACAG 239
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 179 GTTGTCGCCTTCGTTGGGTGAATCATCTGAGACCGGATTTGAAAAAAGGCGCTTTTACAG 238
Query 240 AGAAAGAAGAGAAACGTGTCATCGAACTTCATGCTTTGTTAGGGAACAAATGGGCACGAA 299
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 AGAAAGAAGAGAAACGTGTTATCGAACTTCATGCTTTGTTAGGAAACAAATGGGCACGAA 298
Query 300 TGGCTGAAGAACTACCGGGACGAACAGATAATGAGATCAAGAACTTCTGGAATACAAGAC 359
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 TGGCTGCAGAACTGCCGGGACGAACAGATAATGAGATCAAGAACTTTTGGAATACAAGAC 358
Query 360 TTAAGAGACTGCAACGACTTGGTTTACCTGTTTACCCCGATGAAGTTCGAGAGCATGCGA 419
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 359 TTAAGAGATTACAACGACTTGGTTTACCGGTTTACCCCGATGAAGTTCGAGAGCAAGCGA 418
Query 420 TGAATGCAGCGACACATTCCGGTCTAAACACTGATTCATTGGATGGTCATCATAGTCAAG 479
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 TGAATGCAGCGACACAATCTGGTCTAAACACTGATTCTTTGGATGGTCATCATAGTCAAG 478
Query 480 AATATATGGAGGCAGATACTGTTGAGATTCCTGAAGTGGATTTCGAGCATTTACCACTCA 539
| | | ||||||||||| ||||||||| |||||| |||||||| |||||||||| || |
Sbjct 479 ACTCTTTGGAGGCAGATTGTGTTGAGATCCCTGAATTGGATTTCCAGCATTTACCGCTTA 538
Query 540 ATCGATCTTCTTCATACTACCAGTCAATGCTTCGACA-TGTTCCTCCCACTAACGTCTTT 598
||| || |||||||||||||||||| |||||||| || ||||||||||||| |||||||
Sbjct 539 ATCAATGTTCTTCATACTACCAGTCGATGCTTCG-CAATGTTCCTCCCACTGGCGTCTTT 597
Query 599 GTGAGACAAAAACCGTGTTTCTTTCAGCCGCCTAATGTGTATAACTTGATACCACCATCT 658
|||||||||| ||||| ||||||||||||| ||| |||||||||||||| || || ||
Sbjct 598 GTGAGACAAAGACCGTATTTCTTTCAGCCG---AATATGTATAACTTGATAACAACACCT 654
Query 659 CCTTACATGTCTACCGGAAAACGTCCTAGAGAACCAGAAACCGCGTTTCCTTGCCCGGGT 718
||||||||||||||||| |||||| ||||||||||||||||||| ||||| | || |
Sbjct 655 CCTTACATGTCTACCGGCAAACGTTCTAGAGAACCAGAAACCGCATTTCC--G---GG-T 708
Query 719 GGATATACCATGAACGAGCAAAGCCCTCGGCTCTGGAACTATCCTTTTGTTGAGAACGTT 778
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 709 GGATATGGAATGAACGAGCAAAGCCCTCCGCTTTGGAACTATCCTTTTGTTGAGAACATT 768
Query 779 TCAGAACAGTTACCGGATAGTCATTTGCTTGGTAATGCTGCTTATTCTTCTCCTCCTGGA 838
||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| |
Sbjct 769 TCAGAACAGTTACCGGATAGTCATTTGTTTGGCAATGCTACTTATTCTTCTTCTCCTGAA 828
Query 839 CCTCTTGTTCACGGGGTTGAGAATTTCGAGTTCCCTTCATTCCAATATCATGAAGAGCCT 898
|||||| |||| ||||| ||||| || ||| ||||||| |||||||||| ||||||||||
Sbjct 829 CCTCTTATTCAAGGGGTGGAGAAGTTGGAGCTCCCTTCTTTCCAATATCTTGAAGAGCCT 888
Query 899 GGCGGTTGGGGAGCAGATCAACCTAACCCAATGCCGGAACAT---GAGTCAGATAACACT 955
||||||||||||||||| ||| || ||| ||||||||||||| |||||||||||||||
Sbjct 889 GGCGGTTGGGGAGCAGAACAATCTGACCAAATGCCGGAACATCATGAGTCAGATAACACT 948
Query 956 TTGGTTCAATCTCCTCTGACAGCTCAAACACCATCAGATTGTCCATCATCATCACTCTAT 1015
||||| |||||||||||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct 949 TTGGTCCAATCTCCTCTGACAGATCATACACCATCAGATTGTCCATCATCA-C--TCTAT 1005
Query 1016 GATGGACTGTTGGAATCAGTTGTCTATGGATCATCAGGGGAGAAACCGGCAACCGATACC 1075
|||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1006 GATGGATTGTTGGAATCAGTTGTATATGGATCATCAGGTGAAAAACCGGCAACCGATACC 1065
Query 1076 GATTCAGAATCTTCACTGTTTCAGTC 1101
|| ||||| |||||||| ||||||||
Sbjct 1066 GACTCAGAGTCTTCACTTTTTCAGTC 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5