BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26970.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481571 jgi|Araly1|481571|fgenesh2_kg.4__631__AT2G26970.1 1055 0.0
Ahg918960 jgi|Araly1|918960|scaffold_100241.1 326 2e-88
> Ahg481571 jgi|Araly1|481571|fgenesh2_kg.4__631__AT2G26970.1
Length=714
Score = 1055 bits (571), Expect = 0.0
Identities = 670/717 (93%), Gaps = 9/717 (1%)
Strand=Plus/Plus
Query 6 aaaaaaaTGAACAAACTCTCCAACGCTTTCTCTGTCCTGGCTTTCGCCGATGAAGATGCT 65
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1 AAAAGAATGAACAAACTCTCCAACGCTTTCTCTCTCCTAGCTTTCGCCGATGAAGATGCT 60
Query 66 CCAATGG---CTTCTTCTTCTTCCACTGGGAAACAAGAAGAAAGTGTAAATGGGTCACTT 122
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 61 CCAATGGCTTCTTCTTCTTCTTCCACTGAGAAACAAGAAGAAAGAGTAAATGGGTCACTT 120
Query 123 GAGGATGGAGATTACAAGCAACCACTTGTTTGGATTGACTTGGAAATGACTGGAT-TAAA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 121 GAGGATGGAGATTACAAGCAACCACTTGTTTGGATTGACTTGGAAATGACTGG-TCTAAA 179
Query 182 TGTTGAAGTTGACAGGATATTGGAGATTGCATGTATAATTACTAATGGAGATTTAACACA 241
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||
Sbjct 180 TGTTGAAGTTGACAGGATATTGGAGATTGCTTGTATAATTACTGATGGAAATTTAAC-CA 238
Query 242 A-TCAGTGGAGGGTCCAGATTTAGTTGTACGTCAAACGAAAGACTGTTTGGATAAAATGG 300
| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 239 AATCAGTGGAGGGTCCAGATTTGGTTGTACACCAAACTAAAGACTGTTTGGATAAAATGG 298
Query 301 ATGACTGGTGTCAAACTCATCATGGAGCTAGTGGGTTGACGAAGAAAGTGCTCCTCAGTG 360
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 299 GTGAATGGTGTCAAACTCATCATGGAGATAGTGGGTTGACGAAGAAAGTGCTCCTTAGTA 358
Query 361 CGATAACTGAAAGGGAAGCTGAGCAAAAGGTCATCGAATTCGTAAAGAAGCATGTTGGTT 420
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 CGATAAGTGAAAGGGAAGCTGAGCAAAAGGTCATTGAATTCGTAAAGAAGCATGTTGGTT 418
Query 421 CCGGAAATCCACTGT-TAGCTGGAAACTCAGTCTATGTCGATTTCCTTTTCTTAAAGAAA 479
| | ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 CTGAAAATCCACT-TCTAGCTGGAAACTCAGTCTATGTTGATTTCCTTTTCTTAAAGAAG 477
Query 480 TACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTCGTCGATGTCAGTAGCGTCAAG 539
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 478 TACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTTGTCGACGTCAGTAGCGTCAAG 537
Query 540 GCTTTATGCGCCCGATGGTTCCCCATAGAGAGAAGGAAAGCTCCTGCCAAGAAAAACAAT 599
||| ||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 538 GCTCTATGCTCCCGATGGTTCCCCATAGAGAAAAGGAGAGCTCCTGCAAAGAAAAACAAC 597
Query 600 CACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTACTACAAGAAAACA 659
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 598 CACAGAGCCATGGATGATATAAGAGAAAGCATAAAGGAACTTAAGTACTACAAGAAAACA 657
Query 660 ATATTCAAAGCTAGGAGATGAGTGGAGTTGGGTACTGCAATATGCTTACTTACTAGT 716
||||||||||| ||||||||||||||||| ||| ||||||||||||| |||| ||||
Sbjct 658 ATATTCAAAGCAAGGAGATGAGTGGAGTTAGGTCCTGCAATATGCTTGCTTATTAGT 714
> Ahg918960 jgi|Araly1|918960|scaffold_100241.1
Length=239
Score = 326 bits (176), Expect = 2e-88
Identities = 215/234 (92%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 467 TTTCTTAAAGAAATACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTCGTCGATGT 526
||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 7 TTT-TTACAGAAGTACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTTGTCGACGT 65
Query 527 CAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAGAGAGAAGGAAAGCTCCTGC 586
|||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 66 CAGTAGCGTCAAGGCTCTATGCTCCCGATGGTTCCCCATAGAGAAAAGGAGAGCTCCTGC 125
Query 587 CAAGAAAAACAATCACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTA 646
||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 126 AAAGAAAAACAACCACAGAGCCATGGATTATATAAGAGAAACCATAAAGGAACTTAAGTA 185
Query 647 CTACAAGAAAACAATATTCAAAGCTAGGAGATGAGTGGAGTTGGGTACTGCAAT 700
|||||||||||||||||||||||| |||| |||||||||||| ||| |||||||
Sbjct 186 CTACAAGAAAACAATATTCAAAGCAAGGAAATGAGTGGAGTTAGGTCCTGCAAT 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5