BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G26975.1

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933024 jgi|Araly1|933024|scaffold_401012.1                        579    1e-164


> Ahg933024 jgi|Araly1|933024|scaffold_401012.1
Length=497

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 416/463 (90%), Gaps = 17/463 (4%)
 Strand=Plus/Plus

Query  114  TCAGAAACTTATCATATAATGGATCAT-G------G--TAACATGCCACCA--TC-ATCA  161
            |||||||||||||||| |||||||||| |      |  |||||||||||||   | ||||
Sbjct  3    TCAGAAACTTATCATACAATGGATCATGGTAACATGCATAACATGCCACCACCACTATCA  62

Query  162  -C--CATCATCAATGGTAAATCATACCAATTCCAACATGATCATGATGCATATGACTTTC  218
             |  ||||||||||||  ||||| ||||||||| |||||||| ||||||||||||| |||
Sbjct  63   CCATCATCATCAATGGCGAATCAAACCAATTCCGACATGATCGTGATGCATATGACCTTC  122

Query  219  TTCTGGGGAAAGAACACGGAGATACTCTTCTCCGGCTGGCCCGGGACAAG-TCTCGGCAT  277
            |||||||| |||||||||||||| |||||||||||||||||||||||||| || | ||||
Sbjct  123  TTCTGGGGCAAGAACACGGAGATCCTCTTCTCCGGCTGGCCCGGGACAAGTTC-CCGCAT  181

Query  278  GTACGTTCTATGTCTCATCGTCGTCTTCCTCCTTGCTGTTATCGTCGAGTGGCTTGCCCA  337
            ||| | ||||||||||||||||||||||||||| ||||| |||  |||||||||||||||
Sbjct  182  GTATGCTCTATGTCTCATCGTCGTCTTCCTCCTCGCTGTAATCACCGAGTGGCTTGCCCA  241

Query  338  TTCTTCGATCCTTCGTGGACGTGGCTCCACTAGCCGCGCCAAGGGGCTCGTTCAGACCGC  397
            |||||||||||||||||| ||||||||||| |||||||||  |||||||| |||||||||
Sbjct  242  TTCTTCGATCCTTCGTGGCCGTGGCTCCACCAGCCGCGCCGCGGGGCTCGCTCAGACCGC  301

Query  398  AGTCTACACACTCAAGACAGGCCTTGCTTATCTCGTGATGCTCGCCGTTATGTCCTTTAA  457
             || |||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct  302  CGTGTACACACTCAAGACAGGCCTCGCGTATCTCGTGATGCTGGCCGTTATGTCCTTTAA  361

Query  458  CGGTGGAGTTTTCATTGTCGCTATCGCCGGATTCGCCGTGGGTTTCATGCTCTTCGGAAG  517
            ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  362  CGGCGGTGTTTTCATTGTCGCTATCGCCGGATTCGCCGTTGGTTTCATGCTCTTCGGAAG  421

Query  518  CACTGCTTTCAAGAACCCCTCTGATGACGAGAAACCCTTCGAA  560
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  CACTGCTTTCAAGAACCCCTCTGATGACGAGAAACCCTTCGAA  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25466108556


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5