BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26980.4
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481576 jgi|Araly1|481576|fgenesh2_kg.4__636__AT2G26980.3 2252 0.0
> Ahg481576 jgi|Araly1|481576|fgenesh2_kg.4__636__AT2G26980.3
Length=1607
Score = 2252 bits (1219), Expect = 0.0
Identities = 1456/1563 (93%), Gaps = 46/1563 (3%)
Strand=Plus/Plus
Query 101 TTAAGAGAAATGAATCGGAGACAGCAAGTGAAACGTAGAGTAGGTAAATATGAAGTTGGA 160
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 87 TTAAG-G-AATGAATCGGAGGCAGCAAGTGAAACGTAGAGTAGGTAAATATGAAGTTGGA 144
Query 161 AGAACAATTGGAGAAGGAACGTTTGCTAAAGTTAAGTTTGCTAGAAACTCTGAAACTGGA 220
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 145 AGAACAATTGGAGAAGGAACTTTTGCTAAAGTTAAGTTTGCTAGAAACTCTGAAACCGGA 204
Query 221 GAACCTGTTGCTCTCAAGATTCTTGATAAAGAGAAAGTTCTCAAGCATAAAATGGCTGAA 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 GAACCTGTTGCTCTCAAGATTCTTGATAAAGAGAAAGTTCTCAAGCATAAAATGGCTGAA 264
Query 281 CAGATTAGAAGAGAGATAGCTACTATGAAGTTGATAAAACATCCAAATGTTGTTCAATTA 340
||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 265 CAGATCAGAAGAGAGATAGCTACTATGAAGTTGATTAAGCATCCCAATGTTGTTCAATTA 324
Query 341 TATGAGGTGATGGCAAGTAAGACGAAAATATTTATCATCTTGGAGTATGTTACAGGAGGA 400
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 325 TATGAGGTGATGGCAAGTAAGACGAAGATATTTATCATCTTGGAGTATGTTACAGGAGGA 384
Query 401 GAACTCTTTGATAAGATTGTAAATGATGGGCGGATGAAAGAAGATGAGGCGCGGAGATAT 460
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 385 GAACTCTTTGATAAGATTGTAAATGACGGGCGGATGAAAGAAAACGAGGCGCGGAGATAT 444
Query 461 TTCCAACAGCTTATACATGCTGTGGACTACTGTCATAGCAGAGGGGTCTACCATAGAGAC 520
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 445 TTCCAACAGCTTATACATGCTGTGGACTACTGTCATAGCAGAGGTGTCTACCATAGAGAC 504
Query 521 CTCAAGCCTGAAAATTTACTATTGGACT-CCTATGGAAACCTCAAGATCTCAGATTTTGG 579
|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 505 CTTAAGCCTGAAAATTTACTATTGGA-TGCCTATGGAAACCTCAAGATCTCAGATTTTGG 563
Query 580 ATTAAGTGCTTTGTCCCAACAAGTCAGGGATGATGGACT-CTTGCATACATCGTGTGGAA 638
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 564 ATTAAGTGCTTTGTCCCAACAAGTCAGGGATGATGGACTCCTT-CATACATCGTGTGGAA 622
Query 639 CACCAAACTACGTTGCTCCTGAGGTTCTCAATGATAGAGGCTATGATGGAGCAACAGCTG 698
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 623 CTCCAAACTACGTTGCTCCTGAGGTCCTCAATGATAGAGGCTATGATGGAGCAACAGCGG 682
Query 699 ACATGTGGTCATGCGGTGTTGTACTCTATGTCCTGCTTGCAGGTTACTTACCTTTTGATG 758
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 683 ACATGTGGTCATGCGGTGTTATACTCTATGTCCTGCTTGCAGGTTACTTACCTTTTGATG 742
Query 759 ATTCTAATCTAATGAATCTTTATaaaaaaaTATCATCTGGTGAATTCAACTGTCCTCCGT 818
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 743 ATTCTAATCTAATGAATCTTTATAAAAAAATTTCATCTGGTGAATTCAATTGTCCTCCAT 802
Query 819 GGCTCTCACTCGGTGCCATGAAACTCATCACTAGAATCTTAGATCCGAATCCGATGACTC 878
||||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct 803 GGCTCTCACTCGGCGCCATGAAACTCATCACTCGAATCTTAGATCCAAACCCAATGACCC 862
Query 879 GTGTAACACCGCAAGAGGTTTTCGAAGATGAATGGTTCAAGAAAGATTACAAGCCACCTG 938
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 863 GTGTAACACCGCAAGAGGTCTTCGAAGATGAATGGTTCAAGAAAGATTACAAGCCTCCAG 922
Query 939 TTTTCGAGGAGAGGGA-TGATTCAAACATGGACGATATTGATGCTGTTTTCAAGGACTCT 997
|||||||||||| || || |||||||||||| |||||||||||||||||||||||||||
Sbjct 923 TTTTCGAGGAGAAAGATTG-TTCAAACATGGATGATATTGATGCTGTTTTCAAGGACTCT 981
Query 998 GAGGAACATCTTGTTACTGAGAAGAGAGAAGAACAGCCAGCGGCGATCAATGCCTTCGAG 1057
||||||||||||||||||||||||| |||||||||||||||||| ||||| || || |||
Sbjct 982 GAGGAACATCTTGTTACTGAGAAGAAAGAAGAACAGCCAGCGGCAATCAACGCTTTTGAG 1041
Query 1058 ATCATTTCAATGTCAAG-GGGACTTAACCTAGAGAATCTGTTTGATCCAGAACAGGAATT 1116
||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATCATCTCAATGTCAAGAGGG-CTTAACCTAGAGAATCTGTTTGATCCAGAACAGGAATT 1100
Query 1117 TAAGAGGGAAACAAGGATAACATTGAGAGGAGGCGCGAATGAGATCATCGAGAAGATAGA 1176
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1101 TAAGAGGGAAACAAGGATAACACTAAGAGGAGGCGCGAATGAGATCATCGAGAAGATAGA 1160
Query 1177 AGAAGCTGCAAAGCCTCTCGGTTTCGATGTTCAAAAGAAGAACTACAAGATGAGGCTTGA 1236
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1161 AGAAACTGCAAAGCCTCTCGGTTTTGATGTGCAAAAGAAGAACTACAAGATGAGGCTTGA 1220
Query 1237 GAATGTGAAGGCTGGAAGAAAGGGGAATCTCAATGTAGCGACAGAGATATTCCAAGTAGC 1296
|||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1221 GAATGTGAAGGCCGGGAGAAAAGGGAATCTCAATGTAGCGACGGAGATATTCCAAGTAGC 1280
Query 1297 GCCAAGTCTTCATATGGTTCAAGTATCGAAGTCGAAAGGAGACACTCTCGAATTTCACAA 1356
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1281 ACCAAGTCTTCATATGGTTCAAGTATCGAAGTCGAAAGGAGATACCCTCGAATTCCACAA 1340
Query 1357 GTTCTATAAGAAGCTCTCTAATTCTCTGGAGCAAGTAGTCTGGACGAATAACGAAGTTAA 1416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1341 GTTCTATAAGAAGCTCTCTAATTCTCTGGAGCAAGTAGTCTGGACGAACAACGAAGTTAA 1400
Query 1417 GAAAGAAACAGCAAAGTGATGTATGAGAGTTTTCTTTTGGGACAATTCTTGCTTTCTTTG 1476
||||||||||| ||||||||||||||||| |||| | | | | ||||
Sbjct 1401 GAAAGAAACAGGAAAGTGATGTATGAGAG-----TTTT------A----T-C--T-TTTG 1441
Query 1477 TGTATAAGAGCTTTTTTGCTTTACCGGCTACTTTGTGTGGATGATGAGAAAGGGAGTGGG 1536
| | | | ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1442 -G----A-A-C-TTTTTGCTTGACCGGCTACTTTGTGTGAATGATGAGAAAGGGAGTGGG 1493
Query 1537 ATTGGTTTTGTGTAAAAGAAAGGTGTAAATATGAACTGCATTACTCGATAAGGTGCTGCG 1596
|||||||| ||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 1494 ATTGGTTT-GTGTAAAAGAAAGGTGTAAATATGAACCGCATTA---G----G-TGCTGCG 1544
Query 1597 ATGCCAGTTATAAAGTCATATCAAAGCTTGTTGGCTAAAAGTTTGAAAATGCCTCATTGC 1656
|| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1545 ATACCAGTTATAAAGTCATATCAAAGCTTGTTGGCTATGCGTTTGAAAATGCCTCCTTGC 1604
Query 1657 TCT 1659
|||
Sbjct 1605 TCT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895075300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5