BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26990.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481579 jgi|Araly1|481579|fgenesh2_kg.4__639__AT2G26990.1 2514 0.0
Ahg918055 jgi|Araly1|918055|Al_scaffold_0008_2806 512 3e-144
> Ahg481579 jgi|Araly1|481579|fgenesh2_kg.4__639__AT2G26990.1
Length=1595
Score = 2514 bits (1361), Expect = 0.0
Identities = 1529/1609 (95%), Gaps = 16/1609 (1%)
Strand=Plus/Plus
Query 62 tcttcttcttctacttcCGCAAAAACCCTTTG-AGAAAGAGAAGCAAAATTCTCTAATCG 120
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||
Sbjct 1 TCTTCTTCTTCTACTTCCGCAAAAACCCTTTGCATAAAAAGAAGCAAAATTCTCTCATCG 60
Query 121 TTCTTTCTCTGCCCTAATCCACGTATCGTTTGGTGTTCTTCTTCATC-GAATCGACATGG 179
||||| || ||||||||| |||| |||||||| | ||||||||| || | |||| |||||
Sbjct 61 TTCTTACTTTGCCCTAATTCACGAATCGTTTGTTCTTCTTCTTCCTCTG-ATCGTCATGG 119
Query 180 CTTCAGATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGGAAC 239
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 CTTCAGATGCTGATATGGAGGACTATGGATTCGAGTATTCTGATGAGGACCAAGAGGAAC 179
Query 240 AAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTG 239
Query 300 AAGAAGCACTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGGG 359
|||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||
Sbjct 240 AAGAAGCACTTTCTGGGTTTGCTGAGGTTGTTCAGATGGAGCCAGACAAAGCTGACTGGG 299
Query 360 GTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAA 359
Query 420 TGATGGAAGCCTATACAGAGATGCTTACATATATCAAGTCAGCAGTCACCAGGAATTACA 479
|||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 TGATGGAAGCATATAGAGAGATGCTTACATATATCAAGTCAGCAGTGACCAGGAATTACA 419
Query 480 GCGAAAAATGTATAAACAATATCATGGATTTCGTCTCTGGATCTGCTAGCCAGAACACTG 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 420 GCGAAAAATGTATAAACAATATTATGGATTTCGTCTCTGGATCTGCTAGCCAGAATACTG 479
Query 540 GCCTGCTGCAAGAGTTCTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGA 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCCTGCTGCAAGAGTTTTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGA 539
Query 600 GACTCTGGTTCAAGACAAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACA 659
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GACTCTGGTTCAAGACGAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACA 599
Query 660 GACGGATGACTAAGATTCTGAAGGAACTCCATAAGTCTTGTCAAAAGGAAGATGGAACTG 719
|||| ||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 600 GACGTATGACCAAGATTCTTAAGGAACCCCATAAATCTTGTCAAAAGGAAGATGGAACTG 659
Query 720 ATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACA 719
Query 780 CTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTGCCATCAAGT 839
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 720 CTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTTCCATCAAAT 779
Query 840 CTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACA 839
Query 900 TGGCAGAACGTCAGTGGGAAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACG 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGGCAGAACGTCAGTGGGCAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACG 899
Query 960 ATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAGTATCTTGTTCTGGCGAATATGC 1019
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 900 ATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAATATCTTGTTCTCGCGAATATGC 959
Query 1020 TGATGGAGTCAGAAGTGAATCCGTTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACC 1079
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 TGATGGAGTCGGAAGTGAATCCATTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACC 1019
Query 1080 CTGAGATTTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGT 1139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTGAGATCTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGT 1079
Query 1140 TTGAGAGAATACTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACT 1199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGAGAGAATTCTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACT 1139
Query 1200 ACATGGAAGATCTGCTGAAGAAAGTGAGAACACAAGTGTTACTGAAGCTGATTAAGCCAT 1259
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1140 ACATGGAAGATCTGCTGAGGAAAGTGAGAACACAAGTGTTGCTGAAGCTGATAAAGCCAT 1199
Query 1260 ACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGACGGATGTGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1200 ACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGAAGGACGTGA 1259
Query 1320 CGGAGTTACTAGTGTCGCTGATACTCGACAGCAGAATCGATGGTCACATTGATGAAATGA 1379
||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1260 CGGAGTTGCTAGTGTCACTGATACTCGACAGCCGAATCGATGGTCACATTGACGAAATGA 1319
Query 1380 ACCGTTACTTACTGAGAGGCGACAGTGGCAATGGAAGGAAGTTGCATAAGGCGGTTGATA 1439
|||||||||| || ||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1320 ACCGTTACTTGCTAAGAGGTGACAGTGGCAATGGAAGGAAGCTGCATAAAGCGGTTGATA 1379
Query 1440 AATGGAACTCACAGCTCAAGTCTCTTTCTTCAAATATCACCAGCCGAGTCTGTTAACTTG 1499
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1380 AATGGAACACACAGCTCAAGTCTCTTTCTTCAAACATCACCAGCCGAGTCTGTTAA-T-- 1436
Query 1500 GAAACCTCTCTTTTGGATAGATTTTGTGATTTGGCGTTGATTCTTTGTGGATTATCTGTT 1559
| | | || |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1437 ----C-T-T-TT--GGATAGATTTTGTGTTTTGGCGTTGATTCTCTGTGGATTATCTGTT 1487
Query 1560 TCTCTTCACATAGCTGGATTTGATGGAGTTTATAAACCACTTCAATGCCAAGAAAAAGGA 1619
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1488 TCTCTTCACATAGCTGGATTTGATTGAGTTGATAAACCACTTCAATGCCAAAAAAAAGGA 1547
Query 1620 TTTGAAACTTTTCTTCATTCTCATTTTTAAAATTGATTTCTTAACTTTG 1668
||||||| ||| || |||||| ||||||||||||||||||| ||||||
Sbjct 1548 TTTGAAAATTT-CTGAATTCTCGTTTTTAAAATTGATTTCTTTACTTTG 1595
> Ahg918055 jgi|Araly1|918055|Al_scaffold_0008_2806
Length=1221
Score = 512 bits (277), Expect = 3e-144
Identities = 875/1150 (76%), Gaps = 95/1150 (8%)
Strand=Plus/Plus
Query 287 GAGACTGAACCTGAAGA-AGCACTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGA 345
||||||||||||||| | ||||||||||| |||||||| |||||| |||| || || ||
Sbjct 109 GAGACTGAACCTGAA-ACTGCACTTTCTGGGTTTGCTGATGTTGTTAAGAT-GAGCC-GA 165
Query 346 GAA--A-GCTGACTGGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCT 402
|| | | | ||||| || ||| ||||||| ||| ||||||| |||| |||| | |||
Sbjct 166 -AACCATGATAACTGGTGTCTCATAGCTCTTGAGCGGACTGTGCAGATTTATTGTAGTCG 224
Query 403 AGGTAAATAC-AAAGAAATGATGGAAG-CCTATACAGAGATGCTTACA-TATATCAAGTC 459
||| || || ||| |||| | ||| | | ||| ||||||||||| | | || |||||
Sbjct 225 GGGTGAACACGAAA-AAATTAAGGATGTGC-ATAGAGAGATGCTTA-AGTTTACCAAGT- 280
Query 460 AGCAGTCACCAGGAATTACAGCGAAAAATGTATAAACAATATCATGGATTTCGTCTCTGG 519
| || || ||| | | |||| || ||| | || ||||||||| |
Sbjct 281 --C--TC-CC------TACTTTTATTCTTCCATAACCAGTATTACAGACTTCGTCTCTAG 329
Query 520 ATCTGCTAGCCAGAACACTGGCCTGCTGCAAGAGTTCTATCAGACCACTTTG-AAAGCCC 578
||| |||| | ||| || ||||||| ||||||| ||||||||||| ||| ||| |||
Sbjct 330 CTCTTTTAGCGACAACTTTGACCTGCTGGAAGAGTTTTATCAGACCACCTTGCAAA-CCC 388
Query 579 TTGAAGAG-GCTAA--GAA----TGAGAG-ACTCTGGTTCAAGACAAATCTTAAACTCTG 630
| |||||| | ||| ||| | || | |||||||||||| || ||||| ||||||||
Sbjct 389 TCGAAGAGAG-TAAGGGAAGCTCTCAG-GCACTCTGGTTCAAAACGAATCTGAAACTCTG 446
Query 631 CAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAGATTCTGAAGGAACTCCA 690
||||| || ||||||| || || ||||| || || | |||||| || |||||||||||
Sbjct 447 CAACACCTTGTTTGACCTTCGTAAATACCCACAAATTAGTAAGATCCTCAAGGAACTCCA 506
Query 691 TAAGTCTTGTCAAAAGGAAGATGGAAC-TGATGATCAGAAGAAAGGAAGTCAGCTGCTTG 749
||| | |||||| || |||||||| || | ||| | |||| |||||||||||| || |||
Sbjct 507 TAAATATTGTCAGAATGAAGATGGCACAT-ATGCTAAGAACAAAGGAAGTCAGGTGTTTG 565
Query 750 AGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTT-A-A 807
|||||| ||||| |||| ||| | | |||| |||||| || || |||||| | ||| | |
Sbjct 566 AGGTTTTTGCAAATGAATTTCTGCTCTACATTGAAACAAATGATAACAAAGATCTTAAGA 625
Query 808 -G---CAACTATACCATAAGGCACTTGCCATCAAGTCTGCCATAC--CTCATCCTA-GGA 860
| ||||| ||||| |||||| || || ||| | | | |||| | ||| || ||
Sbjct 626 TGCAACAACTGTACCAGAAGGCATTTTCCGGCAAAT-T-CGATACAAGTGATCATACGG- 682
Query 861 TCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACATGGCAGAACGTCAGTGGGAAG 920
|||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TCATTGGTATAGTACGCGAATGTGGTGGAAAAATGCACATGGCAGAACGTCAGTGGGAAG 742
Query 921 AAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACGATGAAGCTGGCAACCAAAGAC 980
|||| || | |||||| || ||||||| ||| || || |||| | ||||| ||||
Sbjct 743 AAGCTGCCATTGACTTCCGTGCGGCTTTTGCAAACTATAATTTAGCTCGTAACCAGAGAC 802
Query 981 GTATACAGTGCCTGAAGTATCTTGTTCTGGCGAATATGCTGATGGAGTCAGAA-GTGAAT 1039
||||| ||||||| |||||| | |||||||||||||| || || ||| ||| ||||||
Sbjct 803 GTATAAAGTGCCTAAAGTATGGTCTTCTGGCGAATATGATG--GG-GTC-GAAAGTGAAT 858
Query 1040 CCGTTTGAT-GGCCAAGAG-GCAAAGCCGTACAAAAACGACCCTGAGATTTTGGCAATGA 1097
|| ||||| || | || |||| || |||| ||||| |||||||||| ||||||||||
Sbjct 859 CCATTTGACCGGG-A-GACTGCAAGGCGGTACGAAAACAACCCTGAGATCTTGGCAATGA 916
Query 1098 CAAA-TTTGATCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAG 1156
|| |||||| | ||| ||| || |||||| | ||||||| |||||||| |||||
Sbjct 917 -AAGCTTTGATAGAAGCTTATGAAAAAAATGATTTTGCAGAGTTTCAGAGAATATTAAAG 975
Query 1157 AGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAA---ACTACATGGAAGATCT- 1212
| || | | |||||||||||| |||| || ||||||||||||||||
Sbjct 976 --T--CC--A------T---GGATGATCCATTTATCAAAACCTACTACATGGAAGATCTA 1020
Query 1213 GCT--G--AA-GAAAGTGAGAACACAAGTGTTACTGAAGCTGATTAAGCCATACACAAAG 1267
| | | || ||| ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1021 GATATGTTAAAGAAGGTGAGAACACAAGTGTTACTGAACCTGATAAAGCCATATGCAAAT 1080
Query 1268 ATAGGGATTCCGTTCATATCAAAGGAACT-GAACGTGCCAGAGACGGATGTGACGGAGTT 1326
|||||||||| ||||||||||| | |||| | | || ||||||| || || ||||||||
Sbjct 1081 ATAGGGATTCAGTTCATATCAACGAAACTAGG-CATGTCAGAGACAGAAGTTACGGAGTT 1139
Query 1327 ACT-AGTGTCGCTGATACTCGACAG-CAGAATCGATGG-TCACATTGATGAAATGAACCG 1383
|| || |||||||||||||||||| || ||||||||| || ||||||| | ||||| |
Sbjct 1140 GCTGAG-GTCGCTGATACTCGACAGTCA-AATCGATGGGTCT-ATTGATGGAGTGAACGG 1196
Query 1384 TTACTTACTG 1393
|||||| |||
Sbjct 1197 TTACTTGCTG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5