BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27000.1

Length=1716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933050 jgi|Araly1|933050|scaffold_401038.1                        418    7e-116


> Ahg933050 jgi|Araly1|933050|scaffold_401038.1
Length=373

 Score =  418 bits (226),  Expect = 7e-116
 Identities = 327/375 (87%), Gaps = 9/375 (2%)
 Strand=Plus/Plus

Query  1193  TTGTTGTTAATGGTTATGCTATAATGAGAGATCCTGATAACTGGGAAGATCCACTGGAGT  1252
             ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  1     TTGTTATTAATGGTTATGCTATAATGAGAGATCCTAATAACTGGGAAGATCCTCTGGAGT  60

Query  1253  TTAAACCAGAGAGGTTTCTAGCTTCTTCAAGATCAAGCCAAAAAGACGCAATAAAAGAAG  1312
             ||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||||||||||
Sbjct  61    TTAAACCCGAGAGGTTTCTTGATTCTTCAAGATCAAGCCAAAAGGACGCGATAAAAGAAG  120

Query  1313  AAGTTCTAAAATATC-TTTCATTCGGAAGCGGAAGGAGAGGATGTCCTGGAGTGAATCTA  1371
             |||| |||| ||| | || | ||||| || ||||||||||| ||||||||||  ||||||
Sbjct  121   AAGTCCTAAGATA-CATTGCTTTCGGGAGTGGAAGGAGAGGCTGTCCTGGAGCAAATCTA  179

Query  1372  GCTTATGTGTCTGTAGAAACCGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAGATC  1431
             |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  180   GCTTATCTCTCTGTAGAAACTGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAGATC  239

Query  1432  GACGGACATAAGATCAACATGAATGAGGTTGCTGGTAAAGGAACG-TTGAGCATGGCTCA  1490
              | ||| ||||||||||||||||||||| |||||| |||  |||  || | |||||| ||
Sbjct  240   AAAGGAGATAAGATCAACATGAATGAGGCTGCTGGAAAAATAACTATT-ACCATGGC-CA  297

Query  1491  -TCCTCTTAAGTGCACTCTTGTTCCTCGAAGTGTAACCCCATTAACTTCAAAGTAGGCA-  1548
              |||||||| ||||| ||||||||||||||    || | | |||| ||||||||||||| 
Sbjct  298   ATCCTCTTACGTGCAGTCTTGTTCCTCGAACCCAAATCTCTTTAAGTTCAAAGTAGGCAG  357

Query  1549  AT-C-TACTTCTTGA  1561
             || | ||||||||||
Sbjct  358   ATTCCTACTTCTTGA  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64372514050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5