BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27020.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481580 jgi|Araly1|481580|fgenesh2_kg.4__640__AT2G27020.1 1659 0.0
> Ahg481580 jgi|Araly1|481580|fgenesh2_kg.4__640__AT2G27020.1
Length=1017
Score = 1659 bits (898), Expect = 0.0
Identities = 979/1018 (96%), Gaps = 6/1018 (1%)
Strand=Plus/Plus
Query 17 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCAGCTTAAATCACTCGACGAAG 76
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCTGCTTAAATCACTCGAAGAAG 60
Query 77 AAGAAATCAGAAAAGAGTCAGAGaaaaaaaaa-aTCAAGGAAGATGAGTAGCATTGGAAC 135
||||||||| |||||||| | ||||||||| ||| | |||||||||||||||||||||
Sbjct 61 AAGAAATCA-CTAAGAGTCACAAAAAAAAAAAGATCGACGAAGATGAGTAGCATTGGAAC 119
Query 136 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 179
Query 196 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGATGGGAT 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGACGGGAT 239
Query 256 TGTTATGGGAGTTGAGAAACTTATTGCATCAAAGATGATGCTACCAGGTTCCAACAGGAG 315
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 240 TGTTATGGGAGTGGAGAAACTTATTGCATCAAAGATGATGTTACCAGGTTCCAACCGGAG 299
Query 316 AATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 359
Query 376 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 419
Query 436 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATCTGTGTACCCTGTA 495
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 420 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATTTATGTACCCTGTA 479
Query 496 TTGGTGGCTCAGGCCTTTTGGCTGTGGGGTTATTCTTGGAGGTTATGATAGAGATGGACC 555
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 480 TTGGTGGCTCAGGCCTTTCGGCTGTGGAGTCATTCTTGGAGGTTATGATAGAGATGGACC 539
Query 556 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATACTTTGGTGCGGCCATTGG 615
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATATTTTGGTGCGGCCATTGG 599
Query 616 CAAAGGAAAGCAAGCTGCCAAAACGGAAATTGAGAAATTAAATTTATCTGAGATGACATG 675
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CAAAGGAAAGCAAGCGGCTAAAACGGAAATTGAGAAATTGAATTTATCTGAGATGACATG 659
Query 676 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAGGA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAAGA 719
Query 736 CAAGGCTTTTGAATTGGAGATGAGCTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 795
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 CAAGGCCTTTGAATTGGAGATGAGTTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 779
Query 796 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 839
Query 856 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCCGTCTTATTGCGTCGTTT-G 914
|||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
Sbjct 840 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCTGTTTTAATGCGTCGTTTTG 899
Query 915 ATGTTTCTTATGTACTCTGAATTGAATTTTGTCT-GGAGGGACAGTTGTTGCAGTTTCGC 973
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 900 -TGTTTCTTATGTACTCTGAATTGAATTTTGTCTTGGAGGGACAGTTGTTGCAGTGTCTT 958
Query 974 ATGAACCATTGGAGTCTTTTATCTT-ATTGCTATCAACAGTTGCTACGATGACTCCTT 1030
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 959 ATGAACCATTGGAGTCTTTTATCTTTATTGCTATCAACAGTTGCTACGATAATTCCTT 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5