BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27030.3
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481582 jgi|Araly1|481582|fgenesh2_kg.4__642__AT2G27030.3 1038 0.0
Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1 486 8e-137
Ahg934930 jgi|Araly1|934930|scaffold_402918.1 475 2e-133
Ahg938640 jgi|Araly1|938640|scaffold_502831.1 464 4e-130
Ahg925800 jgi|Araly1|925800|scaffold_201361.1 460 5e-129
> Ahg481582 jgi|Araly1|481582|fgenesh2_kg.4__642__AT2G27030.3
Length=714
Score = 1038 bits (562), Expect = 0.0
Identities = 645/683 (94%), Gaps = 14/683 (2%)
Strand=Plus/Plus
Query 2 TTACACACACCAACGTTGAttcttcttcttcttcttcttctc-tctttctC---ATCTAA 57
||||||||||||||||||||||||| || || || | ||||| |||||||| | | ||
Sbjct 1 TTACACACACCAACGTTGATTCTTCCTC-TC-TC-T-TTCTCATCTTTCTCAAAAAC-AA 55
Query 58 A--CCAAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTT 115
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 56 AGCCCAAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAAGAAGCTTT 115
Query 116 TAGCCTTTTCGACAAAGACGGAGATGGTTGCATCACAACGAAAGAGCTAGGAACAGTGAT 175
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 TAGCCTATTCGACAAAGACGGAGATGGTTGCATCACGACGAAAGAGCTAGGAACAGTGAT 175
Query 176 GAGATCATTAGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAGATCATTAGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGA 235
Query 236 TGCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTGAACCTAATGGCTAGGAAGAT 295
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 236 TGCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTCAACCTTATGGCTCGGAAGAT 295
Query 296 GAAGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCA 355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAAGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCA 355
Query 356 GAACGGTTTCATCTCGGCAGCTGAGTTAAGACATGTAATGACAAATCTTGGTGAGAAGTT 415
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 356 GAACGGTTTCATCTCGGCCGCGGAGTTAAGACATGTTATGACTAATCTTGGTGAGAAGTT 415
Query 416 AACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGAT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGAT 475
Query 476 CAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAGAGAAGAGGGAAGAGAGTTATGGC 535
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 476 CAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAGAGAAGAGGGAAGAGGGTTATGAC 535
Query 536 AGCAAAGCGTAGTAGCAATTCTGCTGAATACAAAGAAAAGAATGGTCGCCGGAAAAGTCA 595
| | |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 536 AACTAAGCGTAGTAGCAATTCTACTGAATACAAAGACAAGAATGGTCGCCGGAAAAGCCA 595
Query 596 CTGCCGTATTCTCTGAGCTCCGACCATTTGCTTCTTAATTCCTTTTCTTTATATGTTTGT 655
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 596 CTGCCGTATTCTCTGAGCTCCGACCATTTTCTTCTTAATTCCTTTACTTTATATGCTTGT 655
Query 656 GTGCAATAA---GAGATTTGTAC 675
||| ||||| |||||||||||
Sbjct 656 GTGTAATAATAAGAGATTTGTAC 678
> Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1
Length=750
Score = 486 bits (263), Expect = 8e-137
Identities = 393/456 (86%), Gaps = 8/456 (2%)
Strand=Plus/Plus
Query 61 AAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTTTAGCC 120
|||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 84 AAAAAATGGCGGATCAGCTTACCGATGACCAGATCTCCGAGTTCAAGGAAGCTTTCAGCC 143
Query 121 TTTTCGACAAAGACGGAGATGGTTGCATCACAACGAAA-GAGCTAGGAACAGTGATGAGA 179
| ||||||||||||||||||||||||||||| || ||| ||||| || || |||||||||
Sbjct 144 TCTTCGACAAAGACGGAGATGGTTGCATCACTAC-AAAGGAGCTTGGGACTGTGATGAGA 202
Query 180 TCATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAAGTAGATGC 238
||| | || || || ||||||||||| ||| || || || ||||| ||||||||||||||
Sbjct 203 TCACTCGGGCAGAACCCAACAGAAGCTGAGCTT-CAGGACATGATCAACGAAGTAGATGC 261
Query 239 TGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTGAACCTAATGGCTA-GGAAGATGA 297
||||| ||||| || ||||| ||||| ||||| |||||||| ||||| | |||||||||
Sbjct 262 AGATGGGAACGGGACAATAGATTTCCCGGAGTTCCTGAACCTTATGGC-ACGGAAGATGA 320
Query 298 AGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAGA 357
| |||||||| || || || ||||| || ||||| ||||||||||| || ||||||||||
Sbjct 321 AAGACACTGATTCAGAGGAGGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGA 380
Query 358 ACGGTTTCATCTCGGCAGCTGAG-TTAAGACATGTAATGACAAATCTTGGTGAGAAGTTA 416
||||||||||||||||||||||| || | || || |||||||||||||| |||||| |
Sbjct 381 ACGGTTTCATCTCGGCAGCTGAGCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGCTG 439
Query 417 ACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGATC 476
|| ||||| ||||| |||||||||||| ||| |||||||| ||||| ||||||||||||
Sbjct 440 ACAGATGAGGAAGTCGATGAGATGATCCGAGAGGCTGATGTCGATGGTGATGGTCAGATC 499
Query 477 AATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
|| ||||||||||| |||||||| ||||||||||||
Sbjct 500 AACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAG 535
> Ahg934930 jgi|Araly1|934930|scaffold_402918.1
Length=490
Score = 475 bits (257), Expect = 2e-133
Identities = 397/464 (86%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 56 AAACCAAAA--AATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCT 113
|||| |||| |||||| ||||||||||| || ||||||||||| || ||||||||||||
Sbjct 9 AAACAAAAAGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCT 68
Query 114 TTTAGCCTT-TTCGACAAAGACGGAGATGGTTGCATCACAACGAAA-GAGCTAGGAACAG 171
|| || ||| |||||||| || || |||||||||||||| || ||| ||||| || || |
Sbjct 69 TTCAG-CTTATTCGACAAGGATGGTGATGGTTGCATCACCAC-AAAGGAGCTCGGTACCG 126
Query 172 TGATGAGATCATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAA 230
||||| | || | |||||||| || || ||||| ||| || || || ||||| ||||||
Sbjct 127 TGATGCGTTCCCTCGGTCAAAACCCGACCGAAGCTGAGCTT-CAGGACATGATCAACGAA 185
Query 231 GTAGATGCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTC-TGAACCTAATGGCTAG 289
|| ||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||||
Sbjct 186 GTGGATGCGGATGGTAACGGAACCATTGATTTCCCTGAG-TTCTTGAACCTAATGGCTAG 244
Query 290 GAAGATGAAGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGT-TTTCGATA 348
||| |||||||||||||||||||| ||||| ||||| ||||||||||| || ||| || |
Sbjct 245 GAAAATGAAGGACACTGACTCTGAGGAAGAACTCAAGGAAGCTTTCAGAGTCTTT-GACA 303
Query 349 AGGACCAGAACGGTTTCATCTCGGCAGCTGAGTTAAGACATGTAATGACAAATCTTGGTG 408
| || ||||||||||||||||| || ||||| || |||||||| ||||| || || || |
Sbjct 304 AAGATCAGAACGGTTTCATCTCAGCTGCTGAATTGAGACATGTGATGACTAACCTCGGCG 363
Query 409 AGAAGTTAACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATG 468
||||| |||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 364 AGAAGCTAACTGATGAAGAAGTTGATGAGATGATTAAGGAAGCTGATGTTGATGGTGATG 423
Query 469 GTCAGATCAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
|||||||||| || |||||||||||||| ||||||||||| |||
Sbjct 424 GTCAGATCAACTACGAAGAGTTTGTCAAGGTTATGATGGCCAAG 467
> Ahg938640 jgi|Araly1|938640|scaffold_502831.1
Length=575
Score = 464 bits (251), Expect = 4e-130
Identities = 392/459 (85%), Gaps = 13/459 (3%)
Strand=Plus/Plus
Query 61 AAAA-AATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTTTAGC 119
|||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 16 AAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAAGCTTTCAG- 74
Query 120 CTT-TTCGACAAAGACGGAGATGGTTGCATCACAACGAAAGAGCTAGGAACAGTGATGAG 178
||| |||||||| || || ||||||||||| || || || ||||| || || |||||| |
Sbjct 75 CTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTTGGGACTGTGATGCG 134
Query 179 AT-CATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAAGTAGAT 236
| | || || ||||| ||||| ||||||||| || ||||| ||||| || ||||| ||
Sbjct 135 TTCCCTT-GGACAAAACCCAACCGAAGCAGAGCTT-CAAGACATGATCAATGAAGTGGAC 192
Query 237 GCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTC-TGAACCTAATGGCTAGGAAGAT 295
|||||||||||||| ||||| || ||||| ||| ||| ||||||| |||||| | |||||
Sbjct 193 GCTGATGGTAACGGTACCATTGATTTCCCAGAG-TTCTTGAACCTCATGGCTCGTAAGAT 251
Query 296 GAAGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCA 355
||||||||| |||||||| ||||||||||| ||||| ||| ||||||| || ||||||||
Sbjct 252 GAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCA 311
Query 356 GAACGGTTTCATCTCGGCAGCTGAG-TTAAGACATGTAATGACAAATCTTGGTGAGAAG- 413
|||||||||||| || || |||||| || | ||||| |||||||| ||||||||||||
Sbjct 312 GAACGGTTTCATTTCAGCCGCTGAGCTT-CGTCATGTGATGACAAACCTTGGTGAGAAGC 370
Query 414 TTAACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAG 473
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 371 TT-ACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGGTGATGGTCAG 429
Query 474 ATCAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
|| || |||||||||||||| || || |||||||| |||
Sbjct 430 ATTAACTATGAAGAGTTTGTTAAGGTCATGATGGCTAAG 468
> Ahg925800 jgi|Araly1|925800|scaffold_201361.1
Length=490
Score = 460 bits (249), Expect = 5e-129
Identities = 384/450 (85%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 66 ATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTTTAGCCTTTTC 125
||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 21 ATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGCTTTTAGCCTCTTC 80
Query 126 GACAAAGACGGAGATGGTTGCATCACAACGAAA-GAGCTAGGAACAGTGATGAGATCATT 184
|||||||| ||||||||||||||||| || ||| ||||| |||||||||||| | ||| |
Sbjct 81 GACAAAGATGGAGATGGTTGCATCACCAC-AAAGGAGCTGGGAACAGTGATGCGGTCACT 139
Query 185 AGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGATGCTGATGG 244
||| || || ||||||||||| ||| ||||||| ||||| ||||| || |||||||||||
Sbjct 140 AGGGCAGAACCCAACAGAAGCTGAGCTACAAGACATGATCAACGAGGTTGATGCTGATGG 199
Query 245 TAACGGAACCATAGACTTCCCTGAGTTTCTGAACCTAATGGCTAGGAAGATGAAGGACAC 304
||||| ||||| |||||||||||||| || ||||| ||||||| |||||||||||||||
Sbjct 200 AAACGGCACCATTGACTTCCCTGAGTTCCTAAACCTTATGGCTAAGAAGATGAAGGACAC 259
Query 305 TGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAGAACGGTTT 364
||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 260 AGACTCGGAGGAAGAGCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGGTT 319
Query 365 CATCTCGGCAGCTGAGTTAAGACATGTAATGACAAATCTT-GGTGAGAAGTTAACTGATG 423
||| || || || ||| | | ||||| ||||| ||| || |||||||| | |||||||
Sbjct 320 CATATCCGCTGCAGAGCTGCGCCATGTGATGACTAAT-TTAGGTGAGAAACTGACTGATG 378
Query 424 AAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGATCAATTATG 483
|||| || || ||||||||| ||||||||||||||||||||||||||||| || || |
Sbjct 379 AAGAGGTCGAGGAGATGATCCGTGAAGCTGATGTTGATGGAGATGGTCAGATAAACTACG 438
Query 484 AAGAGTTTGTCAA-AGTTATGATGGCAAAG 512
| ||||||||||| | |||||||||| |||
Sbjct 439 AGGAGTTTGTCAAGA-TTATGATGGCTAAG 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5