BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27035.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481583 jgi|Araly1|481583|fgenesh2_kg.4__643__AT2G27035.1 811 0.0
> Ahg481583 jgi|Araly1|481583|fgenesh2_kg.4__643__AT2G27035.1
Length=560
Score = 811 bits (439), Expect = 0.0
Identities = 516/553 (93%), Gaps = 6/553 (1%)
Strand=Plus/Plus
Query 75 ATAGTAGTTGAAGTGGAATCAAGTCTTCATAGAGTAGGCGGAGGAAGATACACTTGGAAC 134
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATAGTTGAAGTGGAATCAAGTCTTCATAGAGTAGGCGGAGGAAGATACACTTGGAAC 60
Query 135 TCCGATGTCAACTTCTCCGATTGGGCCAACCATCAACGTTTCTACTCCGGCGACTGGCTT 194
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCCGACGTTAACTTCTCCGATTGGGCCAACCACCAACGTTTCTACTCCGGCGACTGGCTT 120
Query 195 TATTTCGGGTTCAATCGAACGCGTCACAATATCCTTCAAGTTAACAAGAGTAGCTACGAG 254
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 TATTTCGGGTTCAATCGAACACGTCACAACATCCTTCAAGTAAACAAGAGTAGCTACGAG 180
Query 255 CAATGCGTTGACAACGATTACATATTCAACATAACACGAGGAGGACGAGATGTTTTTCAA 314
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CAATGCGTCGACAACGATTACATATTCAACATAACAAGAGGAGGACGAGATGTTTTTCAA 240
Query 315 CTCCTTGAACCAAAGCCTTATTATTTCATTTGTGGTAGAGGTTATTGTCTCAAAGGTATG 374
||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct 241 CTCCTAGAACCAAAGCCTTACTACTTCATTTGTGGTAGAGGTTATTGTCACAAAGGTATG 300
Query 375 AAGCTT-GCAATCA-CTGTCCTTCCTCAACCGCCACCATCAGCTCCAACCAATTTCACCT 432
||| || || |||| | |||||||||||||| ||||||||||||||||||||| || |||
Sbjct 301 AAG-TTCGCCATCAAC-GTCCTTCCTCAACCACCACCATCAGCTCCAACCAATCTCGCCT 358
Query 433 CAACCACCACTCCTCTCATACCACCAAATGCTATCACTGCAGCCATTCTCATTTTCGCCT 492
|||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 359 CAACCACCACTCATCTCATACCATCAAATGCTATCACCGCAGCCATTCTCATTTTCACCT 418
Query 493 TTAAAGCTTTACTACTTTGACTATGCTTATCTCGTTTGTTTATTGAGTTGGGTTCAATGT 552
|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 419 TTAAAGCTTTACTACTTTGACTATGCTTATGTCATTTGTTTGTTGAGTTGGGTTCAATGT 478
Query 553 ATGAACTATTAAA--GTTTGAGACACATTCCCAAACTTCAAAAGTTTTCACTTCAATAAG 610
||||||||| ||| ||||| ||||| || ||||||||||||||||||||||||| ||||
Sbjct 479 ATGAACTATAAAAAAGTTTGGGACACTTTTCCAAACTTCAAAAGTTTTCACTTCAGTAAG 538
Query 611 TCGTTTGTTTGTT 623
||| | |||||||
Sbjct 539 TCGGTCGTTTGTT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5