BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27050.1
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481586 jgi|Araly1|481586|fgenesh2_kg.4__646__AT2G27050.1 3096 0.0
Ahg479603 jgi|Araly1|479603|fgenesh2_kg.3__2304__AT3G20770.1 977 0.0
> Ahg481586 jgi|Araly1|481586|fgenesh2_kg.4__646__AT2G27050.1
Length=2132
Score = 3096 bits (1676), Expect = 0.0
Identities = 2008/2163 (93%), Gaps = 44/2163 (2%)
Strand=Plus/Plus
Query 30 tctctctTTCATCTTCAAACTCTACAAACCCAGAAACCACCACACAGTAATTAATGTCTC 89
|||||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||
Sbjct 1 TCTCTCTTTCATCTACGAACCCTACAAACCCAG-AA--ACCACACAGTAATTAATGTCTC 57
Query 90 TTTCTTTCTTCCCATGTGATCTTTAACAGAC--TT-TTCTTCTTATTCTCCATCTCTGAA 146
|||| || | |||||||||||||| ||| || |||||||| |||||||||| ||||
Sbjct 58 TTTC--TC-T-CCATGTGATCTTTATTTGACTTTTCTTCTTCTTCTTCTCCATCTTTGAA 113
Query 147 GTTGTGGGGATTCATCAAGACTTCCTTATCTGTTTC-TTTTATAAAACAAGAGAGAGATA 205
||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 114 ATTGTGGGGATTGATCAAGACTTCCTTATCTGTTTCTTTTTATGAAACAAGAGAGAGATA 173
Query 206 CCACTTTTG-GTGTTCTTTATTTGCAACTCTTTCAGGTTAAAGAAATCGATAGGCTC--T 262
||| ||||| ||||||||||| ||||||||||||||| ||| | || | | ||| |
Sbjct 174 CCAGTTTTGTGTGTTCTTTATCTGCAACTCTTTCAGG-CAAA-CACTCTTTTGTCTCTTT 231
Query 263 G-TTCT-TGATTGTGGTGGAAG-AGACATGATGATGTTTAACGAGATGGGAATGTATGGA 319
| |||| | ||||| | ||| || |||||||||||| || ||||||||||||||||||
Sbjct 232 GCTTCTCTTATTGT--T-AAAGAAGTCATGATGATGTTCAATGAGATGGGAATGTATGGA 288
Query 320 AACATGGATTTCTTCTCTTCCTCCACATCTCTCGATGTGTGTCCATTACCACAAGCTGAA 379
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 289 AACATGGATTTCTTCTCATCCTCCACATCTCTCGATGTGTGTCCATTACCACAAACAGAA 348
Query 380 CAAGAACCTGTAGTTGAAGATGTCGACTACACCGATGATGAGATGGATGTGGATGAGCTT 439
|||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 349 CAAGAACCAGTTGTTGAAGATGTCGACTATACCGATGATGAAATGGATGTGGATGAGCTT 408
Query 440 GAGAAGAGGATGTGGAGAGACAAAATGCGTTTGAAACGTCTCAAGGAGCAACAGAGTAAG 499
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 409 GAGAAAAGGATGTGGAGAGACAAAATGCGTTTGAAACGTCTCAAGGAGCAGCAGAGTAAG 468
Query 500 TGTAAAGAAGGCGTCGATGGTTCGAAACAGAGGCAGTCGCAAGAGCAAGCTAGGAGGAAG 559
||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct 469 TGTAAAGAAGGTGTCGATGGTTCGAAGCAGAGACAGTCGCAGGAGCAAGCGAGGAGGAAG 528
Query 560 AAAATGTCTAGAGCCCAAGATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTTTGT 619
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AAGATGTCTAGAGCTCAAGATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTTTGT 588
Query 620 AAAGCTCAAGGCTTTGTTTATGGTATTATTCCTGAGAAGGGTAAGCCTGTGACTGGTGCT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAAGCTCAAGGCTTTGTTTATGGTATTATTCCTGAGAAGGGTAAGCCTGTGACTGGTGCT 648
Query 680 TCGGATAATTTGAGGGAATGGTGGAAAGATAAGGTTAGGTTTGATCGTAATGGTCCAGCT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCGGATAATTTGAGGGAATGGTGGAAAGATAAGGTTAGGTTTGATCGTAATGGTCCAGCT 708
Query 740 GCTATTGCTAAGTATCA-GTCAGAGAATAATATTTCTGGAGGGAGTAATGATTGTAACAG 798
|||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 709 GCTATTGCCAAGTATCAAG-CAGAGAATAATATTCCTGGAGGGAGTAATGATTGTAACAG 767
Query 799 CTTGGTTGGTCCAACACCGCATACGCTTCAGGAGCTTCAGGACACGACTCTTGGTTCGCT 858
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTTGGTTGGACCAACACCGCATACGCTTCAGGAGCTTCAGGACACGACTCTTGGTTCGCT 827
Query 859 TTTATCGGCTTTGATGCAACATTGTGATCCACCGCAGAGACGGTTTCCTTTGGAGAAAGG 918
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 828 TTTATCGGCTTTGATGCAACATTGTGATCCTCCGCAGAGACGGTTTCCATTGGAGAAAGG 887
Query 919 AGTTTCTCCACCTTGGTGGCCTAATGGGAATGAAGAGTGGTGGCCTCAGCTTGGTTTACC 978
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 888 AGTTTCTCCACCTTGGTGGCCTAATGGGAATGAAGATTGGTGGCCTCAGCTTGGTTTGCC 947
Query 979 AAATGAGCAAGGTCCTCCTCCTTATAAGAAGCCTCATGATTTGAAGAAAGCTTGGAAAGT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AAATGAGCAAGGTCCTCCTCCTTATAAGAAGCCTCATGATTTGAAGAAAGCTTGGAAAGT 1007
Query 1039 CGGTGTTTTAACTGCGGTGATCAAGCATATGTCGCCGGATATTGCGAAGATCCGTAAGCT 1098
|||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1008 TGGTGTTTTGACTGCGGTGATCAAGCATATGTCGCCTGATATTGCGAAAATACGTAAGCT 1067
Query 1099 TGTGAGGCAATCAAAATGCTTGCAGGATAAGATGACGGCGAAAGAGAGTGCTACTTGGCT 1158
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGTGAGGCAATCGAAATGCTTGCAGGATAAGATGACGGCGAAAGAGAGTGCTACTTGGCT 1127
Query 1159 TGCCATTATTAACCAAGAAGAGGTTGTGGCTCGGGAGCTTTATCCCGAGTCATGCCCTCC 1218
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1128 TGCTATTATTAACCAAGAAGAGGTTGTGGCGCGGGAGCTTTATCCCGAGTCATGCCCTCC 1187
Query 1219 TCTTTCTTCTTCTTCATCATTAGGAAGCGGGTCGCTTCTCATTAATGATTGTAGCGAGTA 1278
|||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1188 TCTTTCTTCTTCATCATCTTTGGGAAGCGGGTCGCTTCTCATTAATGATTGTAGTGAGTA 1247
Query 1279 TGACGTTGAAGGTTTCGAGAAGGAACAACATG-GTTTCGATGTGGAAGAGCGGAAACCAG 1337
||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||
Sbjct 1248 TGACGTTGAAGGTTTTGAGAAGGAACAACC-GAGTTTCGATGTGGAAGAGCAAAAACCAG 1306
Query 1338 AGATAGTGATGATGCATCCTCTAGCAAGCTTTGGGGTTGCTAAAATGCAACATTTTCCCA 1397
|||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1307 AGATTGTTATGATGAATCCTCTAGCAAGCTTTGGGATTGCTAAAATGCAACATTTTCCCA 1366
Query 1398 TAAAGGAGGAGGTCGCCACCACGGTAAACTTAGAGTTCACGAGAAAGAGGAAGCAGAACA 1457
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1367 TAAAGGAGGAGGTCGCCACCGCGGTAAACTTGGAATTCACGAGAAAGAGGAAGCAGAACA 1426
Query 1458 ATGATATGAATGTTATGGTAATGGACAGATCAGCAGGTTACACTTGTGAGAATGGTCAGT 1517
| ||||||||||||||| | ||||||||| ||| | ||||||||||||||||||| ||||
Sbjct 1427 ACGATATGAATGTTATGATTATGGACAGACCAGTAAGTTACACTTGTGAGAATGGCCAGT 1486
Query 1518 GTCCTCACAGCAAAATGAATCTTGGATTTCAAGACAGGAGTTCAAGGGACAACCACCAGA 1577
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1487 GTTCTCACAGCAAAATGAATCTTGGATTTCAAGACAGGAGTTCAAGGGACAACCACCAAA 1546
Query 1578 TGGTTTGTCCATATAGAGACAATCGTTTAGCGTATGGAGCATCCAAGTTTCATATGGGTG 1637
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1547 TGGTTTGTCCATACAGAGACAATCGCGTAGCGTATGGAGCATCCAAGTTTCATATGGGTG 1606
Query 1638 GAATGAAAC-TAGTAGTTCCTCAGCAACCAGTCCAACCGATCGACCTATCGGGCGTTGGA 1696
||||||||| | ||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 1607 GAATGAAACCT-GTAGTTCCTCAGCAAGCAGTCCAACCGATCGACCTATCAAGCTTTGGA 1665
Query 1697 GTTCCGGAAAACGGGCAGAAGATGATCACCGAGCTTATGGCCATGTACGACAGAAATGTC 1756
|||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1666 GTTCCGGAAAACGGACAGAAGATGATCACCGATCTTATGGCTATGTACGATAGAAATGTC 1725
Query 1757 CAAAGCAACCAAACGCCTCCTACTTTGATGGAAAACCAAAGCATGGTCATTGATGCAAAA 1816
|| ||||||||| | |||||| | ||||||||||| ||||||||| |||| |||||||||
Sbjct 1726 CAGAGCAACCAAGCTCCTCCTCCATTGATGGAAAATCAAAGCATGATCATGGATGCAAAA 1785
Query 1817 GCAGCTCAGAATCAGCAGCTGAATTTCAACAGTGGCAATCAAATGTTTATGCAACAAGGG 1876
|||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1786 GCAGCTCAGAATCAGCAGATGAGTTTCAACAGCGGCAATCAAATGTTTATGCAACAAGGG 1845
Query 1877 ACGAACAACGGGGTTAACAATCGGTTCCAGATGGTGTTTGATTCGACACCATTCGATATG 1936
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1846 ACAAACAACGGGGTTAACAATCGGTTCCAGATGGTGTTTGATTCGACACCGTTTGATATG 1905
Query 1937 GCAGCATTCGATTACAGAGATGATTGGCAAACCGGAGCAATGGAAGGAATGGGGAagcag 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1906 GCAGCATTCGATTACAGAGATGATTGGCAAACCGGAGCAATGGAAGGAATGGGGAAG-A- 1963
Query 1997 cagcagcagcagcagcagcagcaAGATGTATCAATATGGTTCTGAATATTACACAATCTC 2056
|||||||||| || | ||||||||||||||| ||||||||||||| ||||
Sbjct 1964 -AGCAGCAGCA--AG-A---------TGTATCAATATGGTTTTGAATATTACACACTCTC 2010
Query 2057 TGTAACATTCATTCTTTCATAATAACTCTGTTACCTACTTACCTGACTTGGGTATGTATT 2116
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2011 TGTAACATTCATTCTTTCATAATAATTCTGTTACCTACTTACCTGACTTGGGTTTGTATT 2070
Query 2117 CTATTGGCACCAAACACTCATCTATATTGTTGATGATGATGAAGCCATCTAttttttttG 2176
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CTGTTGGCACCAA-CACTCATCTATATTGTTGATGATGATGAAGCCATCTATTTTTTTTG 2129
Query 2177 TGT 2179
|||
Sbjct 2130 TGT 2132
> Ahg479603 jgi|Araly1|479603|fgenesh2_kg.3__2304__AT3G20770.1
Length=2225
Score = 977 bits (529), Expect = 0.0
Identities = 1096/1359 (81%), Gaps = 82/1359 (6%)
Strand=Plus/Plus
Query 289 GATGATGTTTAACGAGATGGGAATGTATGGAAACATGGATTTCTTCTCTTCCTCCACATC 348
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 260 GATGATGTTTAACGAGATGGGAATGTGTGGAAACATGGATTTCTTCTCTT-CT--GGATC 316
Query 349 TC-T--CGATG-TG-TGTC--CA-T--TACCACAAGCTGAACAAGA-ACCTGTAGTTGAA 397
|| | || | || | || | | | ||||||||||| | || || | ||||||
Sbjct 317 TCTTGGTGAAGTTGATTTCTGTACTGCT-CCACAAGCTGAGCCTGATTCC-ATTGTTGAA 374
Query 398 GATGTCGACTACACCGATGATGAGATGGATGTGGATGAGCTT-GAGAAGAGGATGTGGAG 456
|| |||||| || ||||||||||| ||||| ||||| || |||| ||||||||||||
Sbjct 375 GA---CGACTATACTGATGATGAGATCGATGTCGATGA-ATTGGAGAGGAGGATGTGGAG 430
Query 457 AGACAAAATGC-GTTTGAAACGTCTCAAGGAGCAACAGAGTAAGTGTAAAGAAGGCGTCG 515
||||||||||| | || |||||||||||||||| | || |||| | |||||||| || |
Sbjct 431 AGACAAAATGCGGCTT-AAACGTCTCAAGGAGC-A-GGA-TAAGAGCAAAGAAGGTGTTG 486
Query 516 ATGGTTCGAAACAGAGGCAGTCGCAAGAGCAAGCTAGGAGGAAGAAAATGTCTAGAGCCC 575
||| | | |||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 487 ATGCTGCTAAACAGAGGCAGTCTCAAGAGCAAGCTAGGAGGAAGAAAATGTCTAGGGCTC 546
Query 576 AAGATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGCTTTG 635
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 AAGATGGGATCTTGAAGTATATGTTGAAGATGATGGAAGTGTGTAAAGCTCAAGGCTTTG 606
Query 636 TTTATGGTATTATTCCTGAGAA-GGGTAAGCCTGTGACTGGTGCTTCGGATAATTTGAGG 694
|||| || |||||||| || || ||| || ||||| |||||||| || |||||| | ||
Sbjct 607 TTTACGGGATTATTCCCGAAAATGGG-AAACCTGTTACTGGTGCATCTGATAATCTCCGG 665
Query 695 GAATGGTGGAAAGATAAGGTTAGGTTTGATCGTAATGGTCCAGCTGCTATTGCTAAGTAT 754
|| ||||||||||||||||| |||||||||||||||||||| || |||||| | || ||
Sbjct 666 GAGTGGTGGAAAGATAAGGTCAGGTTTGATCGTAATGGTCCTGCGGCTATTACGAAATAC 725
Query 755 C-AGTCAGAGAATAATATTTCTGGAGGGAGTA-ATGATTGTAAC-AGCTTGGTTGGTCCA 811
| || | ||||| |||| || | |||| || |||| ||||| | | | |||| |||
Sbjct 726 CAAG-CGGAGAACAATA--TCCCG-GGGA-TACATGAAGGTAACAATC-CGATTGGGCCA 779
Query 812 ACACCGCATACGCTTCAGGAGCTTCAGGACACGACTCTTGGTTCGCTTTTATCGGCTTTG 871
|| ||||| || || || |||||||| ||||| |||||||| |||||||| || || |||
Sbjct 780 ACTCCGCACACTCTGCAAGAGCTTCAAGACACTACTCTTGGATCGCTTTTGTCTGCGTTG 839
Query 872 ATGCAACATTGTGATCCACCGCAGAGACGGTTTCCTTTGGAGAAAGGAGTTTCTCCACCT 931
|||||||| |||||||| || |||||||||||||||||||||||||| ||| |||| ||
Sbjct 840 ATGCAACACTGTGATCCTCCTCAGAGACGGTTTCCTTTGGAGAAAGGTGTTCCTCCTCCG 899
Query 932 TGGTGGCCTAATGGGAATGAAGAGTGGTGGCCTCAGCTTGGTTTACC-AAATGAGCAAGG 990
|||||||||| ||||| || || ||||||||||| || ||||| || ||| || |||||
Sbjct 900 TGGTGGCCTAGCGGGAACGAGGATTGGTGGCCTCAACTCGGTTTGCCTAAA-GATCAAGG 958
Query 991 TCCTCCTCCTTATAAGAAGCCTCATGATTTGAAGAAAGCTTGGAAAGTCGGTGTTTTAAC 1050
|||| | ||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 959 TCCTGCACCTTACAAGAAGCCTCATGATTTGAAGAAGGCGTGGAAAGTCGGCGTTTTGAC 1018
Query 1051 TGCGGTGATCAAGCATATGTCGCCGGATATTGCGAAGATCCGTAAGCTTGTGAGGCAATC 1110
||| || ||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 1019 TGCAGTTATCAAGCATATGTTTCCTGATATTGCTAAGATCCGTAAGCTCGTGAGGCAATC 1078
Query 1111 AAAATGCTTGCAGGATAAGATGACGGCGAAAGAGAGTGCTACTTGGCTTGCCATTATTAA 1170
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1079 TAAATGCTTGCAGGATAAGATGACTGCTAAAGAGAGTGCTACTTGGCTTGCCATTATTAA 1138
Query 1171 CCAAGAAGAGGTTGT-GGCTCGGGAGCTTTATCCCGAGTCATGCCCTCCTCTTTCTTCTT 1229
|||||||||| | | |||| | ||||||||||||||||| || || |||||||||| |
Sbjct 1139 CCAAGAAGAG-TCCTTGGCTAGAGAGCTTTATCCCGAGTCTTGTCCACCTCTTTCTT-TG 1196
Query 1230 CTTCATCATTAGGAAGCGGGTCGCTTCTCATTAATGATTGTAG-CGAGTATGACGTTGAA 1288
| | | | ||||| | ||||| || || |||||||| || | | || || ||||||
Sbjct 1197 -T-C-TGGT--GGAAGTTGCTCGCTCCTGATGAATGATTGCAGTCAA-TACGATGTTGAA 1250
Query 1289 GGTTTCGAGAAGGAA-CAACATGGTTTCGATGTGGAAGAGCGGAAACCAGAGATAGTGAT 1347
|||||||||||||| | || | | || |||||||||| || ||||||| ||||||
Sbjct 1251 GGTTTCGAGAAGGAGTCT-CAC--TAT-GAAGTGGAAGAGCTCAAGCCAGAGAAAGTGAT 1306
Query 1348 GATGCATCCTCTAGCAAGCTTTGGGGT---TGCTAAAATGCAACATTTTCCCAT-AAAGG 1403
|| || || | ||| ||||||| | |||||||||||| | ||||| | ||||
Sbjct 1307 GA---ATTCT-T--CAAACTTTGGGATGGCTGCTAAAATGCATGACTTTCCTGTCAAAGA 1360
Query 1404 AGGAGGTCGCCACCACGGTAAACTTAGAGTTCACGAGAAAGAGGAAG-CAGAACA-ATGA 1461
|| || || ||| || || ||||| || |||| ||||||||||||| || |||| | ||
Sbjct 1361 AGAAG-TC-CCAACA-GG-AAACTCGGAATTCATGAGAAAGAGGAAGACA-AACAGA-GA 1414
Query 1462 TATGAATGTTATGGTAATGGACAGATCAGCAGGTTA-CACTTGTGAGAATGGTCAGTGTC 1520
| |||| ||| || |||||||| | | |||| ||| || |||||| | ||||
Sbjct 1415 TCTGAACACTAT--TA-TGGACAGA--A-C-GGTTTTCACCTGCGAGAATCTTGGGTGTG 1467
Query 1521 CTCACAGCAAAATGAATCTTGGATTTCAAGACAGGAGTTCAAGGGACAACCACCAGAT-G 1579
| |||||| |||| | | ||||||| || |||| |||||| |||||||| || || |
Sbjct 1468 CACACAGCGAAATCAGCCGGGGATTTCTGGATAGGAATTCAAGAGACAACCATCA-ATTG 1526
Query 1580 GTTTGTCCATATAGAGACAATCGTTTAGCGTATGGAGCA 1618
| |||||| || |||||||| | ||| |||||||||||
Sbjct 1527 GCATGTCCACATCGAGACAATTGCTTACCGTATGGAGCA 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85322148800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5