BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27060.1
Length=3508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933067 jgi|Araly1|933067|scaffold_401055.1 4806 0.0
> Ahg933067 jgi|Araly1|933067|scaffold_401055.1
Length=3110
Score = 4806 bits (2602), Expect = 0.0
Identities = 2951/3119 (95%), Gaps = 26/3119 (1%)
Strand=Plus/Plus
Query 228 AATTGCTCAGTTTTGAAGTCATGCAGATAATATGTTCGATGATATTCCTGTTAGTGATGA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTGCTCAGTTTTGAAGTCATGCAGATAATATGTTCGATGATATTCCTGTTAGTGATGA 60
Query 288 TGGTGATGAAAGTTTCAGGTTTTTCTGACTTTGAAGCTCTTTTGGAGCTTAAGAAAGGTT 347
| |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TAATGATTACCGTTTCAGGGTTTTCCGACTTTGAAGCTCTTTTGGAGCTTAAGAAAGGTT 120
Query 348 TTCAGGGTGACCCTTCTCGAAAAGTTCTTACTTCATGGGATGCTAAAGCTTTATCCTCTG 407
||||| ||||||||| | ||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 121 TTCAGAGTGACCCTTTTGGAAAAGTTCTTGCTTCGTGGGATGCTAAAGCTTTATCCACTG 180
Query 408 ATAGGTGTCCGTTAAACTGGTACGGAGTTACTTGTAGTAGCGGAGGTGTTACTTCTATTG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATAGGTGTCCGTTAAACTGGTACGGAGTTACTTGTAGTAGCGGAGGTGTTACTTCCATTG 240
Query 468 ATTTGAATGGTTTCGGTCTGCTTGGGAGTTTCAGTTTTCCAGTCATTGTTGGTCTGAGAA 527
||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 241 ATTTGAATGGTTTAGGTTTGCTTGGGAATTTCAGTTTCCCAGTCATTGTTGGTCTAAGAA 300
Query 528 TGCTTCAGAATTTGTCGATTGCGAATAATCAGTTTAG-TGGAACTCTCTCTAACATTGGT 586
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 301 TGCTTCAGAATTTGTCGATTTCGAATAATCAGTTT-GCTGGAACTCTCTCTAACATTGGT 359
Query 587 TC-GTTAACGTCTCTTAAGTACTTGGATGTTTCGGGTAACTTGTTCCATGGCGCATTACC 645
|| |||| |||||||||||| ||||||||||||||||||||||||| |||| | |||||
Sbjct 360 TCTTTTAA-GTCTCTTAAGTATTTGGATGTTTCGGGTAACTTGTTCCGTGGCTCGTTACC 418
Query 646 TTCTGGAATTGAGAATTTGAGGAACCTTGAGTTTGTGAATCTCTCTGGTAACAACAACT- 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 419 TTCTGGAATTGAGAATTTGAGGAACCTTGAGTTTGTGAATCTCTCTGGTAACAATAA-TC 477
Query 705 TGGGAGGAGTGATTCCTTCTGGTTTTGGGAGTCTTGC-CAAGTTGAAGTACCTTGATTTG 763
||||||||||| ||||| ||||||||||||||||| | |||||| ||||||||||||||
Sbjct 478 TGGGAGGAGTGGTTCCTGCTGGTTTTGGGAGTCTT-CAGAAGTTGCAGTACCTTGATTTG 536
Query 764 CAAGGCAACAGTTTCTCTGGGGAAGTGATGAGTCTGTTTTCACAGCTAATTAGTGTGGAG 823
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAAGGCAATAGTTTCTCTGGGGAAGTGATGAGTCTGTTTTCACAGCTAATTAGTGTGGAG 596
Query 824 TATGTAGATATAAGCAGGAACAACTTCTCGGGTTCGCTTGATCTGGGTCTAGCAAAGTCA 883
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 597 TATGTAGATATAAGCAGGAACAACTTCTCGGGTTCGCTTGATCTGGGTCTCGCAAAGACA 656
Query 884 AGCTTTGTTTCCTCGATTCGTCATTTGAACGTAAGTGGGAATTCTTTGGTAGGGGAGCTA 943
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGCTTTGTTTCTTCGATTCGTTATTTGAACGTAAGTGGGAATTCTTTGGTAGGGGAGCTA 716
Query 944 TTTGCTCATGATGGTATCCCCTTTTTCGATAGCTTAGAGGTGTTTGATGCTAGCAGCAAT 1003
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct 717 TTTGCTCATGATGGCATCCCATTTTTCGATAGCTTAGAAGTGTTGGATGCTAGCAGTAAT 776
Query 1004 CAATTGTCTGGTTCTGTTCCAGTCTTCAGCTTTGTTGTCTCTCTCAAGATTCTTCGGTTA 1063
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 CGATTGTCTGGTTCTGTTCCAGTCTTCAGTTTTGTTGTCTCTCTCAAGATTCTTCGGTTG 836
Query 1064 CAAGACAATCAGTTGTCGGCTTCTTTACCACCGGGCCTTCTGCAAGAGAGTTCAACCATC 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 837 CAAGACAATCAGTTGTCGGCTTCTTTACCACCGGGCCTTCTGCAAGAGAGTTCGACCATC 896
Query 1124 TTAACTGACCTTGATCTTAGCCTCAATCAACTTGAAGGTCCTATCGGAAGTATAACCTCT 1183
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 897 TTAACTGAGCTAGATCTTAGCCTCAATCAACTTGAAGGTCCTGTCGGAAGTATAACCTCT 956
Query 1184 TCAACACTAGAGAAGCTCAATTTGTCTTCAAATAGACTATCGGGATCATTACCTTTGAAA 1243
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 957 TCCACACTAGAGAAGCTCAATTTGTCTTCAAATAGACTATCCGGATCCTTACCTCTGAAG 1016
Query 1244 GTTGGACATTGTGCCATTATTGATCTGAGTAACAATAAGATATCAGGAGAATTGTCAAGG 1303
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1017 GTAGGGCATTGTGCCATTATTGATCTGAGTAACAATAAGATTTCAGGAGACTTGTCAAGG 1076
Query 1304 ATACAGAATTGGGGAGATTCTGTAGAAATTATTCGGTTGAGTTCAAACTCACTCACTGGA 1363
|||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1077 ATACAGAATTGGGGGGATTCTATAGAAAATATTCGGTTGAGTTCAAACTCACTCACTGGA 1136
Query 1364 ACACTACCTGGCCAAACTTCTCAATTCCTGAGGCTGACTTCACTCAAGGCTGCTAACAAC 1423
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 1137 ACACTACCTGGCCAAACTTCTCAATTCTTGAGGCTGACTTCACTCGAGGTTGCTAACAAC 1196
Query 1424 TCGTTGCAGGGTGTACTACCATTTATTTTAGGAACGTATCCTGAGCTGAAAGAGATTGAT 1483
|||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1197 TCGTTGCAGGGTGTACTACCATTTATTTTAGGAACGTATCCTGAACTTAAAGGGATTGAT 1256
Query 1484 CTCAGTCACAACCAGCTTAGTGGCGTCATACCGAGTAATCTGTTCATATCTGCAAAGTTG 1543
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1257 CTCAGTCACAACCAGCTTAATGGCGTCCTACCGAGTAATCTGTTCATATCTGCAAAGTTG 1316
Query 1544 ACGGAACTCAACTTGTCAAACAATAATTTCTCTGGTTCTCTTCCTCTTCAAGATGCAAGT 1603
||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 ACGGATCTCAACCTATCAAATAATAATTTCTCTGGTTCACTTCCTCTTCAAGATGCAAGT 1376
Query 1604 ACTGTGGGAAACCTTAGCTTGACCAATATTGGTCTGTCTCATAACTCGTTAGGTGGAGTT 1663
|||| ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1377 ACTGCGGGAAACCTCAGCTTGACCAATATTGGCCTGTCGCATAACTCCTTAGGTGGAGTT 1436
Query 1664 CTCTCAGAGGAACTAACTCGCTTCCACAATCTGATTTCTCTTGACCTTTCTTATAACAAC 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTCTCAGAGGAACTAACTCGCTTCCACAATCTGATTTCTCTTGACCTTTCTTATAACAAC 1496
Query 1724 TTTGAAGGGAATATCCCTGATGGCCTTCCAGACAGCCTAAAGATGTTCACTGTCTCTGCC 1783
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1497 TTTGAAGGGAATATCCCTGATGGCCTCCCGGACAGCCTAAAGGTGTTCACTGTCTCTGCC 1556
Query 1784 AATAATCTCTCTGGAAATGTGCCGGAGAATCTTAGACGGTTTCCAGATTCAGCGTTTCAT 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AATAATCTCTCTGGAAATGTGCCGGAGAATCTTAGACGGTTTCCAGATTCAGCGTTTCAT 1616
Query 1844 CCAGGGAACG-CTTTACTGAATGTCCCCATTTCTCTACCAA-A--AG-A--TAAAACAGA 1896
|||||||||| ||| ||||||||||||| |||||| | || | || | |||||||||
Sbjct 1617 CCAGGGAACGACTT-ACTGAATGTCCCCGTTTCTCCAGAAACACCAGTAGATAAAACAGA 1675
Query 1897 TATAACCTTACGGAAGCATGGGTATCATATGAAGACTTCTGTAAAGGCAGCCCTGATCAT 1956
||| ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1676 TATGACCTTGCGGAAGCATAGGTATCATATGAAGTCTTCCGTAAAGGCAGCCCTGATCAT 1735
Query 1957 AGGCTTGGTCGTGGGTACTGCTCTACTTGCTCTTGTTTGCGTAATGTTTCATTTTATGTT 2016
||||||||| |||||| |||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1736 AGGCTTGGTTGTGGGTGCTGCTCTACTTGCTCTTGTTTGTGCAATGTTTCATTTTACGTC 1795
Query 2017 GAGAAAGCAACATGATGAAGAGAAGTCGGATGTGACTGGAGAAAAGAGTATTGTTCCAAA 2076
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 1796 GAGAAAGCAACATGATGAAGAGAAGTCGGATGTTACTGGAGAAAAGAGCATTGTTCAAAA 1855
Query 2077 AACTGAACCTTCTTCTTCCAATGTGATTGCAGCAAAGAACAGTGTACAGGAAAATGAATC 2136
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1856 AACTGAACCTTCTTCTTCCAATGTGATTGCAGCAAAAAACAGTGTACAGGAAAATGAATC 1915
Query 2137 TTCGTCTTCTACTACTTCTACTCCCTCAATCAAGGCCAAGCTACCGGTTTCTTCTTCACG 2196
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1916 TTCGTCTTCTACTACTTCTACTCCCTCAATCAAAGCCAAGCTACCGGTTTCTTCTTCACG 1975
Query 2197 TTTCTCCCAATATAGTGACTCTGAGAATTCTTCACCATTTTTGAAAGAACCTA-ACGAGG 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1976 TTTCTCCCAATATAGTGACTCTGAGAATTCTTCACCATTTTTGAAAGAACCTACA-GAGG 2034
Query 2256 AGCTTCACTCTGAATC--CA-GAAAAGATGAAATCTTGTCATCCCAAGTATCTTCTTCAA 2312
||||||| ||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 2035 AGCTTCATTCTGACTCAACAAGAAAAGATGAAGCCTTGTCATCCCAAGTATCTTCTTCAA 2094
Query 2313 CTCCATCGCTGCCTAAAATCCAGAATTCACCAGATAATCCTACGTCTCGCCAGACTTCTA 2372
||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 2095 CTCCATCGCTGCCTAAAATCCAGAATTCACCTGATAATCCTAGGTCTCGCCAAACTTCTA 2154
Query 2373 TGAGATTGGATGGGAACCTGTATATTTTCGACAGTTCTCTTAAGCTTACTGCAGAGGAAC 2432
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2155 TGAGATTGGATGGGAACCTGTATATATTCGACAGTTCTCTTAAGCTTACAGCAGAGGAAC 2214
Query 2433 TGTCTCGTGCTCCGGCTGAAGCTATCGGAAGGAGTTGCCATGGAACGCTGTACAGGGCAG 2492
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2215 TGTCTCGTGCTCCGGCTGAAGCTATCGGAAGGAGCTGCCATGGAACGCTGTACAGAGCAG 2274
Query 2493 TGCTTAATTCTGATTCTGTATTAGCGGTCAAATGGTTAAGAGAAGGGACTGCAAAAGGTA 2552
|||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 2275 TGCTCAATTCTGATTCTGTATTAGCAGTCAAATGGTTGAGGGAAGGGACTGCAAAAGGTA 2334
Query 2553 AGAAGGAATTTGCAAGGGAGATAAAGAAACTTGGGAACATCAATCACCCAAATCTTGTTT 2612
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2335 AGAAGGAATTTGCAAGGGAGATAAAAAAAATTGGGAACATCAATCACCCAAATCTTGTTT 2394
Query 2613 CTCTTCAGGCTTACTATTGGGGTCCAAAAGAACACGAGAAGCTCATCATATCAAGATACA 2672
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2395 CTCTTCAGGCTTACTATTGGGGTCCGAAAGAACACGAGAAGCTCATCATATCAAGATACA 2454
Query 2673 TGGATGCACCCTGTTTAGCTTTCTATCTCCAAGAGGCTGGACAGCTAAACCTCCCACCAT 2732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 TGGATGCACCCTGTTTAGCTTTCTATCTCCAAGAGGCTGGACAGCTAAACCTCCCACCAT 2514
Query 2733 TGTTACTGGAAAACCGTCTTAAAATTACTCTGGACATAGCCAGTTGTCTTAGTTACCTGC 2792
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 TGTTACTTGAAAATCGTCTTAAAATTACTCTGGACATAGCCAGTTGTCTTAGTTACCTGC 2574
Query 2793 ACAATGGGGAAGCAATTCCACACGGGAATCTAAAATCAACTAATGTTCTCCTGAAACCTC 2852
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2575 ACAATGGGGAAGCAATTCCACATGGGAATCTAAAATCAACTAATGTTCTCCTGAAACCTC 2634
Query 2853 CTGAACTCACTGCACACCTAACAGATTATAGTCTTCATCGATTAATCACACCAGAAGCCA 2912
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2635 CTGAACTCACTGCACACCTAACAGATTACAGTCTTCATCGGTTAATCACACCAGAAGCCA 2694
Query 2913 CGTCAGAGCAAGTCTTGAACGCAGCTGCCCTTGGCTACTGCCCTCCAGAGTTTGCCAGCT 2972
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 2695 CGTCAGAGCAAGTCTTGAATGCAGCTGCTCTCGGCTACTGCCCTCCAGAGTTTGCCAGCT 2754
Query 2973 CGAGTAAACCGTACCCTTCTCTGAAAAGCGATGTCTATGCCTTTGGAGTCATTTTGTTAG 3032
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2755 CGAGTAAACCGTATCCTTCTCTGAAAAGCGATGTGTATGCCTTTGGGGTCATTTTGTTAG 2814
Query 3033 AGCTTCTAACAGGAAAAGTTTCGGGAGATATAGTGTGCAGTGATCCAGGTGTCGTTGAAC 3092
|||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||
Sbjct 2815 AGCTTCTAACAGGAAAGGTATCAGGAGATATAGTTTGCAGTGATCCAGGGGTCGTTGAAC 2874
Query 3093 TCACTGAATGGGTTCTACTGCTTGTGGGACAAAACCGTGCAACTGAGTGTTTTGATCCAT 3152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2875 TCACTGAATGGGTTCTACTGCTTGTGGGACAAAACCGTGCAACTGAGTGTTTTGATCCAT 2934
Query 3153 CGATTGTTGGATCACAGGGCTCAAGGAATCCCTT-TGGGGTTCTTACTGATGTCTTGCAG 3211
| ||| |||| |||||||||||||||||| | || ||| |||||||||||||||||||||
Sbjct 2935 CCATTATTGGGTCACAGGGCTCAAGGAATGC-TTCTGGAGTTCTTACTGATGTCTTGCAG 2993
Query 3212 GTTGCTCTGAGCTGTATCTCACCAGCACCAGAGAGACCGGATATGAAGCTAGTCTCTCAA 3271
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2994 GTTGCTCTGAGCTGTATCTCACCAGCACCAGAGAGACCGGATATGAAGTTGGTCTCTCAA 3053
Query 3272 GAGCTCTCCAGAATTGTTCTCAAGAGGACAGCAATCTAGAAGAGCTTTCTTTGTGAATG 3330
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 3054 GAGCTCTCCAGAATTGTTCTCAAGAGGACA--AA-CTAGAAGAGCTTTCTCTGTGAATG 3109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132478411613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5