BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27080.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481588 jgi|Araly1|481588|fgenesh2_kg.4__648__AT2G27080.1 1354 0.0
Ahg900381 jgi|Araly1|900381|Al_scaffold_0004_1031 1086 0.0
> Ahg481588 jgi|Araly1|481588|fgenesh2_kg.4__648__AT2G27080.1
Length=915
Score = 1354 bits (733), Expect = 0.0
Identities = 836/886 (94%), Gaps = 6/886 (1%)
Strand=Plus/Plus
Query 87 CTATCTCCAATGGCTGAACGAGTCTATCCCGCCGATTCACCACCACAAAGCGGACAATTC 146
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 32 CTATCTCCAATGGCTGAACGAGTCTATCCCACCGATTCACCACCAGAAAGCGGACAATTC 91
Query 147 TCCGGCAACTTCAGCTCCGGCGAATTCCCCAA-AAAACCAGCACCACCACCATCAACATA 205
||||||||||||||||||||||| || |||| ||||||| ||||||||||| |||||||
Sbjct 92 TCCGGCAACTTCAGCTCCGGCGAGTT-TCCAAGAAAACCAACACCACCACCAGCAACATA 150
Query 206 CGTAATCCAAGTCCCAAAAGATCAAATCTACCGTATACCACCGCCGGAAAACGCACACCG 265
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 151 CGTAATCCAAGTCCCAAAAGATCAGATCTACCGTATCCCACCACCGGAAAACGCCCACCG 210
Query 266 CTTTGAACAACTCTCTCGTaaaaaaaCCAACCGCAGTAACTGTAGATGCTGCTTCTGCTC 325
| || ||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct 211 CCTTCAACAACTCTCTCGTAAAAAAACCAATCGCAGTACCTGCAGATGCTGTTTCTGCTC 270
Query 326 ATTCCTCGCCGCGGTTTTCATCTTAATCGTCCTCGCCGGAATATCCTTCGCGGTTCTCTA 385
||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 271 ATTCCTCGCCGCGATTTTCATCTTAATCGTCCTCGCCGGAATATCCTTGGCGATTCTCTA 330
Query 386 CCTAATCTACCGTCCCGAAGCTCCTAAATACTCCATCGAAGGATTCTCTGTTTCCGGTAT 445
|||||| ||||||||||||||||| |||||||| |||||||||||| | |||||||||||
Sbjct 331 CCTAATATACCGTCCCGAAGCTCCAAAATACTCTATCGAAGGATTCACAGTTTCCGGTAT 390
Query 446 CAATCTGAATTCAACATCTCCGATTTCGCCGAGTTTTAACGTTACCGTTAGATCACGTAA 505
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 391 CAATCTGAATTCAACATCTCCGATTTCGCCGAATTTTAACGTTACCGTTAGATCGCGTAA 450
Query 506 CGGTAACGGTAAAATCGGGGTTTACTACGAGAAAGAAAGCTCTGTTGATGTGTATTACAA 565
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 451 CGGTAACGGTAAAATCGGGGTTTATTACGAGAAAGAAAGCTCTGTGGATGTTTATTACAA 510
Query 566 CGACGTTGATATAAGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAAC 625
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CGACGTTGATCTATGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAAC 570
Query 626 GGTCGTTAAGTTGGTTTTAAGTGGTTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGA 685
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 571 GGTCGTTAGGTTGGCGTTAAGTGGGTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGA 630
Query 686 GATGCGTAATGAGGTGAGTAAGAAAACGGTGCCGTTTAAGTTGAAGATTAAAGCTCCGGT 745
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 631 GATGCGTAATGAGGTGAGTAAGAAAACGTTGCCGTTTAAGTTGAAGATTAAAGCTCCGGT 690
Query 746 GAAGATTAAGTTTGGTTCTGTTAAGACGTGGACTATGATTGTTAATGTTGACTGTGATGT 805
|||||||||| ||||||| |||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 691 GAAGATTAAGGTTGGTTCCGTTAAGACGTGGTCTATGATCGTTAATGTTGAGTGTGATGT 750
Query 806 AACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGT 810
Query 866 GGATCTTTGGTGATGAATTTGCTCTTTGt-tttttttttttAA-A-GAAGAAAATAAGAA 922
||||||||||||||||||||| | ||||| ||||||||||||| | ||||||||||||||
Sbjct 811 GGATCTTTGGTGATGAATTTGGTTTTTGTCTTTTTTTTTTTAAGAAGAAGAAAATAAGAA 870
Query 923 AAGAAATGAGTACAGAGGATGTTTTTGGATTTGTAGGAtttttttt 968
||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 871 AAGAAATGAGTACAGAGGATGTTTT-GGATTTGTAGGATTTATTTT 915
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 14 TATATTTGCTTCTCCGTTTCTCATTTCTCAACT 46
||| |||||||||||||||||||||||||||||
Sbjct 1 TATTTTTGCTTCTCCGTTTCTCATTTCTCAACT 33
> Ahg900381 jgi|Araly1|900381|Al_scaffold_0004_1031
Length=678
Score = 1086 bits (588), Expect = 0.0
Identities = 644/672 (96%), Gaps = 0/672 (0%)
Strand=Plus/Plus
Query 207 GTAATCCAAGTCCCAAAAGATCAAATCTACCGTATACCACCGCCGGAAAACGCACACCGC 266
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 7 GTAATCCAAGTCCCAAAAGATCAAATCTACCGTATCCCACCGCCGGAAAACGCACACCGC 66
Query 267 TTTGAACAACTCTCTCGTaaaaaaaCCAACCGCAGTAACTGTAGATGCTGCTTCTGCTCA 326
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 67 TTTGAACAACTCTCTCGTAAAAAAACCAACCGCAGTAACTGTAGATGCTGTTTCTGCTCA 126
Query 327 TTCCTCGCCGCGGTTTTCATCTTAATCGTCCTCGCCGGAATATCCTTCGCGGTTCTCTAC 386
||||| || || |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 127 TTCCTGGCAACGATTTTCATCTTAATCGTCCTCGCCGGAATATCCTTGGCGATTCTCTAC 186
Query 387 CTAATCTACCGTCCCGAAGCTCCTAAATACTCCATCGAAGGATTCTCTGTTTCCGGTATC 446
||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||
Sbjct 187 CTAATCTACCGTCCCGAAGCTCCAAAATACTCTATCGAAGGATTCACAGTTTCCGGTATC 246
Query 447 AATCTGAATTCAACATCTCCGATTTCGCCGAGTTTTAACGTTACCGTTAGATCACGTAAC 506
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 247 AATCTGAATTCAACATCTCCGATTTCGCCGAATTTTAACGTTACCGTTAGATCGCGTAAC 306
Query 507 GGTAACGGTAAAATCGGGGTTTACTACGAGAAAGAAAGCTCTGTTGATGTGTATTACAAC 566
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 307 GGTAACGGTAAAATCGGGGTTTATTACGAGAAAGAAAGCTCTGTGGATGTTTATTACAAC 366
Query 567 GACGTTGATATAAGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAACG 626
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GACGTTGATCTATGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAACG 426
Query 627 GTCGTTAAGTTGGTTTTAAGTGGTTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGAG 686
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 427 GTCGTTAGGTTGGCGTTAAGTGGGTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGAG 486
Query 687 ATGCGTAATGAGGTGAGTAAGAAAACGGTGCCGTTTAAGTTGAAGATTAAAGCTCCGGTG 746
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 487 ATGCGTAATGAGGTGAGTAAGAAAACGTTGCCGTTTAAGTTAAAGATTAAAGCTCCGGTG 546
Query 747 AAGATTAAGTTTGGTTCTGTTAAGACGTGGACTATGATTGTTAATGTTGACTGTGATGTA 806
||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 547 AAGATTAAGGTTGGTTCTGTTAAGACGTGGACTATGATCGTTAATGTTGAGTGTGATGTA 606
Query 807 ACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGTG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGTG 666
Query 867 GATCTTTGGTGA 878
||||||||||||
Sbjct 667 GATCTTTGGTGA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5