BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27090.1
Length=2679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481592 jgi|Araly1|481592|fgenesh2_kg.4__652__AT2G27090.1 4012 0.0
> Ahg481592 jgi|Araly1|481592|fgenesh2_kg.4__652__AT2G27090.1
Length=2517
Score = 4012 bits (2172), Expect = 0.0
Identities = 2418/2533 (95%), Gaps = 32/2533 (1%)
Strand=Plus/Plus
Query 20 ctctctctctctcttctctctACCCATCTGATTCGCTGCTGACTCACACACGACACAGAC 79
|||| |||||||| |||||||||||||||||||||||||||||| | |||| |
Sbjct 13 CTCT-TCTCTCTC-TCTCTCTACCCATCTGATTCGCTGCTGACT------C-ACAC--A- 60
Query 80 CACCTCTCTCCTTCTTCTTCGTCTCCTGTAGAAGAAGACGTTTTGTTTTCTTTTGGGTTT 139
||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 61 CACCTCTCTCCTTCTTCTTCGCCTCCTGTAGAAGAAGACGTTTTG-----TTTT--GTTT 113
Query 140 GATCCTCTCGCGTAACTCCAAAGCTCTCAAAGGACATCTCTTTAGCTTGGACAATGGGTG 199
|||||||| | | ||||||||||||| || ||||||||||||||||||||||||
Sbjct 114 GATCCTCT--C---A----AAAGCTCTCAAAGAACCTCTCTTTAGCTTGGACAATGGGTG 164
Query 200 CATCAACATCCAGAATAGATGAAGATAAAGCCTTACAGTTATGTCGAGAAAGaaaaaaaT 259
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 165 CATCAACATCCAGAATAGATGAAGATAAAGCCTTACAGTTATGTAGGGAAAGAAAAAAAT 224
Query 260 TCGTCCAACAAGCACTCGATGGAAGATGTTTGTTAGCTGCTGCTCACGTTTCATACGTTC 319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 225 TCGTCCAACAAGCACTCGATGGAAGATGTTTGTTAGCTGCTGCTCATGTTTCATACGTTC 284
Query 320 AGTCTCTTAAGAGTACCGGAACTGCCCTCAGGAAATTTTCTGAGACTGAAGTTCCAGTTG 379
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 285 AGTCTCTTAAGAGTACCGGAACTGCCCTCAGGAAATTTGCTGAGACTGAAGTTCCAGTTG 344
Query 380 AATCTTCCTTGTACACGTCCACTAGTGCAACACCAGAACAACCTCTTGCTTTAATCGAGA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AATCTTCCTTGTACACGTCCACTAGTGCAACACCAGAACAACCTCTTGCTTTAATCGAGA 404
Query 440 AATCTGTTTCTCATTTGTCATACTCTCCTCCACCTGCTTCACATTCCCACCATGACACGT 499
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 405 AATCGGTTTCTCATTTGTCATACTCTCCTCCACCTGCTTCACATTCCCACCATGATACGT 464
Query 500 ATTCTCCTCCTCCGTCGCCTCCTAGTACCAGTCCGTTCCAGGTCAATCATATGAAATTCA 559
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 465 ATTCTCCTCCTCCGTCGCCTCCTAGTACCAGTCTGTTCCAGGTCAATCATATGAAATTCA 524
Query 560 AAGGGTTTTCTTCaaaaaaaGTGGAAGAGAAACCACCAGTATCTATTATTGCCACTGTTA 619
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct 525 GAGGGTTTTCTTCAAAAAAAGTGGAAGAGAAACCGCCAGTTTCTATTGTTGCCACTGTAA 584
Query 620 CCTCATCCAGTATCCCACCAAGCAGGTCTATAGAAAAGATGGAATCAACCCCATTTGAGG 679
| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CGTCATCCAGTATACCACGAAGCAGGTCTATAGAAAAGATGGAATCAACCCCATTTGAGG 644
Query 680 AATCTTCTTCCATGCCACCTGAAGCACCTTGGGATTATTTTGGTCTTTCTCATCCAATTG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AATCTTCTTCCATGCCACCTGAAGCACCTTGGGATTATTTTGGTCTTTCTCATCCAATTG 704
Query 740 ACAACCAGTTTTCTTCTTCTCATGTTGGGAATGGTCATGTGTCGAGATCTGTTAAGGAGG 799
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 705 ACAACCAGTTTTCTTCTTCTCATGTTGGAAATGGTCATGTGTCGAGATCTGTGAAGGGGG 764
Query 800 AAGATGGAACTCCAGAGGAGGAAGATGATGGTGAGGACTTTTCTTTTCAAGAAAGGGAAG 859
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AAGATGAAACTCCAGAGGTGGAAGATGATGGTGAGGACTTTTCTTTTCAAGAAAGGGAAG 824
Query 860 AGTCCAGAGATTCGGATGATGATGAGTTTGATGAACCCACAAGTGATACTCTTGTTAGAA 919
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 825 AGTCCAGAGATTCGGATGATGATGAGTTTGATGAGCCCACAAGTGATACTCTTGTTAGAA 884
Query 920 GCTTTGAAAACTTCAATAGAGTGCGCCGTGATCACAGTACTTTGCCTCAAAGAGAGGGAG 979
|||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 885 GCTTTGAAAACTTCAACAGAGTGCGCCGTGATCACAGTGCTTTACCTCAAAGAGAGGGAG 944
Query 980 TGGAAAGCGACTCCTCAGACGCTGAGAAAAGTAAAACTCCTGAGTTATCACCACCAGTGA 1039
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TTGAAAGCGAGTTCTCAGACGCTGAGAAAAGTAAAACTCCTGAGTTATCACCACCAGTGA 1004
Query 1040 CGCCTTTAGTAGCTACTCCAGTGAACAAAACACCAAACAAGGGAGATCACACCGAGAACA 1099
| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1005 CACCTTTAGCAGCCACTCCAGTGAACAAAACACCAAACAAGGAAGATCACACCGAGAACA 1064
Query 1100 AGCTTCCTCCCAGGGACTTCTTGTCAAGTATGAAAGAGATAGAGTTGCTCTTTGTTAAAG 1159
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1065 AGCTTCCTCCCAGGGACTTCTTGTCAAGCATGAAAGAGATAGAGTTGCTCTTTGTTAAAG 1124
Query 1160 CTTCAGAGACTGGAAAAGAGGTTCCTAGGATGCTTGAAGCCAATAAACTACATTTCCGTC 1219
||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1125 CTTCAGAGACTGGGAAAGAGGTTCCTAGGATGCTTGAAGCCAATAAATTGCATTTCCGTC 1184
Query 1220 CAATAGTTCCATCAAAAGAAAGTGGCTCCGGTGCATCATCACTGTTCAAAACCTGTCTCT 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 CAATAGTTCCATCAAAAGAAAGTGGCTCCGGTGCATCATCACTGTTCAAAACATGTCTCT 1244
Query 1280 CTTGTGGGGAAGATCCAAAAGATGTACCGGAAGAGCCTGCTCAGAACTCTGTGAAATACT 1339
|||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1245 CTTGTGGGGAAGATCCCAAAGATGTACCAGAAGAGCCCGCTCAGAACTCAGTGAAATACT 1304
Query 1340 TGACCTGGCATAGGACTGAATCTTCACGATCCTCATCTTCTCGGAATCCTCTCGGAGGAA 1399
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1305 TGACCTGGCATAGGACCGAATCTTCACGATCCTCATCTTCTCGGAATCCTCTTGGAGGAA 1364
Query 1400 TGAATTCTGATGATGTGGAAGAGCTCAATAGTAATCTCTTTGAAAACATTTGCATGATTG 1459
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1365 TGAATTCTGATGATGTGGAAGAGCTGAATAGTAATCTCTTTGAAAACATTTGCATGATTG 1424
Query 1460 CTGGAAGCCATGCCTCAACGCTAGACAGATTGTATGCATGGGAGCGGAAGCTCTATGATG 1519
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1425 CTGGAAGCCATGCCTCAACGCTAGACAGACTGTATGCATGGGAGCGGAAGCTCTATGATG 1484
Query 1520 AAGTTAAGGGGAGTCAGACTGTGCGGAGAGAGTATGACGAAAAGTGCAGAATTTTGAGAG 1579
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1485 AAGTTAAGGGGAGTCAGACTGTGCGGAGAGAGTATGATGAAAAGTGCAGAATTTTGAGAG 1544
Query 1580 AACTTGAATCAGAAGGTAAAGGTTCACAAAGAATAGACAAGACACGTGCAGTTGTGAAAG 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 AACTTGAATCAGAAGGTAAAGGTTCACAAAGAATAGACAAGACACGTGCAGTTGTGAAAG 1604
Query 1640 ACCTTCACTCCAGAATCAGAGTGGCGATTCATAGGATCGACTCAATATCAAGACGGATTG 1699
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1605 ACCTTCACTCCAGAATCAGAGTTGCGATTCATAGGATCGACTCAATATCAAGACGGATTG 1664
Query 1700 AAGAACTCCGTGACAATGAGCTCCAGCCTCAACTTGAAGAACTCATTGAAGGGTTGAGTC 1759
|||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1665 AAGAACTCCGCGACAACGAGCTCCAGCCTCAACTTGAGGAACTCATTGAAGGGTTGAGTC 1724
Query 1760 GTATGTGGGAAGTAATGTTGGAATGCCACAAGGTTCAGTTTCAGTTAATCAAAGCGTGTT 1819
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GTATGTGGGAAGTGATGTTGGAATGCCACAAGGTTCAGTTTCAGTTAATCAAAGCGTGTT 1784
Query 1820 ACAGAGGCGGAAACATTAAACTCAACATGCAATCAGAGTTGCACAGACAAGTAACATCTC 1879
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1785 ACAGAGGCGGAAACATTAAACTCAACATGCAATCGGAGTTGCACAGACAAGTAACATCTC 1844
Query 1880 ACCTTGAAGATGAGCTCTGCGCATTGGCCTCAAGCTTTACAAAATGGATCACAGGCCAGA 1939
||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1845 ACCTTGAAGATGAACTGAGCGCGTTGGCCTCAAGCTTCACAAAATGGATCACAGGCCAGA 1904
Query 1940 AATCGTATATTCAAGCGATAAACGAGTGGCTGGTGAAATGTGTCGCCTTACCACAACGAT 1999
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1905 AATCATATATTCAAGCGATAAACGAGTGGCTAGTAAAATGTGTCGCCTTACCACAACGAT 1964
Query 2000 CC---AAACGAAAAAGGCGTGCACCACAACCGTCTTTGAGAAACTATGGGCCCCCCATTT 2056
|| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1965 CCTCCAAACGGAAAAGGCGTGCCCCACAACCGTCTTTGAGAAACTATGGTCCTCCCATTT 2024
Query 2057 ATGCAACCTGTGGAATCTGGCTAGAAAAGCTCGAAGTCTTACCTACCAAAGAGGTTTCAG 2116
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2025 ATGCAACCTGTGGAATCTGGCTAGAAAAGCTCGAAGTTTTACCTACCAAAGAGGTTTCAG 2084
Query 2117 GCTCCATTAAAGCACTTGCTTCTGATGTTGCCAGGTTCTTGCCACGTCAGGAGAAGAATC 2176
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 2085 GCTCCATTAAAGCACTTGCTTCTGATGTTGCCAGGTTCTTGCCTCGTCAAGAGAAGAGTC 2144
Query 2177 GCACCAAGAAACATCGATCTGGTGAGAACAAAAACGATTTGACAGCTCACATGTTGCAAG 2236
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2145 GCACCAAGAAACATCGGTCTGGTGAGAACAAAAACGATTTGACAGCTCACATGCTGCAAG 2204
Query 2237 ATGAGACATTGGAGGATTGTGGTCCGGGATTTGATCGGTTTAGGACAAGCTTGGAAGGAT 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2205 ATGAGACATTGGAGGATTGTGGTCCGGGATTTGATCGGTTTAGGACAAGCTTGGAAGCAT 2264
Query 2297 TTGTTGGACAACTCAACCAGTTTGCAGAATCATCAGTGAAAATGTATGAGGAACTTAAAG 2356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 TTGTTGGACAACTCAACCAGTTTGCAGAATCATCAGTGAAAATGTATGAGGAACTTAAAC 2324
Query 2357 AAGGAATCCACGGAGCTAAAAACAACTACGAGCAGTTGAAGAAGGCGTACTCTTCACAAG 2416
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2325 AAGGAATCCACGGAGCTAAGAACAACTACGAGCAGTTGAAGAAGGCTTACTCTTCACAAG 2384
Query 2417 GAAAATGAAttttttt-GGTTTCTTAGAAAAATGGAGTTTTGTCAGGTTAGAATTTTGGA 2475
|||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2385 GAAAATGATTTTTTTTTGGTTTCTTGGAAAAATGGAGTTTTGTCAGGTTAAAATTTTGGA 2444
Query 2476 GGGAAAATTGGGTTTAGGCATTTGTAAATGCAAAAGGGATTACATAAAAAGATTGCTTCA 2535
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2445 GGGAAAATTGGGTTTAGGCATTTGTAAATGCAAAAGAGATTATATAAAAAGATTGCTTCA 2504
Query 2536 AGCATGAATTTGG 2548
|| |||||| |||
Sbjct 2505 AGTATGAATATGG 2517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053419985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5