BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27130.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481600 jgi|Araly1|481600|fgenesh2_kg.4__660__AT2G27130.1 965 0.0
> Ahg481600 jgi|Araly1|481600|fgenesh2_kg.4__660__AT2G27130.1
Length=755
Score = 965 bits (522), Expect = 0.0
Identities = 694/773 (90%), Gaps = 28/773 (4%)
Strand=Plus/Plus
Query 1 AAAGTTAACTTGTCCAAATAAAATTAATTCCCCATTCCAAAAAACATTGAGTGCAATCTC 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 AAAGTTAACTTGTCCAAATAAAATTAATTCCCCATTCCAAAAAACACTGAGTGCAAGC-A 59
Query 61 AGATCAGATCTAATCACATTCCACCAGATGCTCACCACCAACACT-CTCGCCGTCCTCCT 119
| |||||||||||||||||||| ||||||||||||||||||| | |||||| |||| ||
Sbjct 60 ATCTCAGATCTAATCACATTCCAACAGATGCTCACCACCAACA-TCCTCGCCATCCT-CT 117
Query 120 CCTCCTCTTCCTCAGTCTCTGCTCCGGGCAGTCACCTCCGGCACCGGAACCCATCGCCGC 179
| | | |||||| ||||| |||||||||| | ||||||||||| ||||||| ||||||
Sbjct 118 --T-C-C-TCCTCACTCTCTCCTCCGGGCAGACTCCTCCGGCACCAGAACCCACCGCCGC 172
Query 180 CGATGGACCTTCATCTCCGGTTAACTGTCTAGTATCTATGCTAAACGTATCAGACTGCTT 239
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 173 CGACGGACCTTCATCTCCGGCGAACTGTCTAGTATCTATGCTAAACGTATCAGACTGCTT 232
Query 240 CTCGTACGTTCAAGTGGGAAGTAATGAGATCAAGCCTGAAGCTGCTTGTTGCCCGGAGCT 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 233 CTCGTACGTTCAAGTGGGAAGTAATGAGATCAAGCCTGAACCTGCTTGTTGCCCGGAGCT 292
Query 300 TGCTGGGATGGTTCAAAGTTCGCCGGAGTGTGTCTGTAATCTT-TACGGCGGCGGCGCAT 358
|||||| ||||||||||| ||||| || ||||| ||||||||| | |||||| |||||||
Sbjct 293 TGCTGGTATGGTTCAAAGCTCGCCAGAATGTGTTTGTAATCTTCT-CGGCGGTGGCGCAT 351
Query 359 CGCCGCGGTTTGGAGTTAAGCTTGATAAACAGAGAGCTGAGCAACTTTCAACTATCTGTG 418
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 352 CGCCGCGTTTTGGAGTTAAGCTTGATAAACAGAGAGCTGAGCAACTTTCAACAATCTGTG 411
Query 419 GTGTGAAAGCTCCATCTCCTAGTTTGTGTTCAGTTTTAGGTTTTCCGACGATCTCGCCGG 478
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
Sbjct 412 GTGTGAAAGCTCCATCTCCTAGTTTGTGTTCAGTTCTGGGTTTTCCGACGATCTCTCCTG 471
Query 479 CCGGAAGTGAAGATTCATCTTCAGGTTCTGAAGGATCGGATAAAGATAAGAAAAATGGAG 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 472 CCGGAAGTGAAGATTCATCTGCAGGTTCTGAAGGATCGGATAAAGATAAGAAAAATGGAG 531
Query 539 CTATGACTACTAAATATTGTGGAGTAGCTTTGAACTCATTAGCCTTACTATTATTGTTCA 598
|||||||||||||| ||| | |||||||||||||||| ||||||||| ||||||||| ||
Sbjct 532 CTATGACTACTAAAGATTTTAGAGTAGCTTTGAACTCCTTAGCCTTAATATTATTGTCCA 591
Query 599 CGTTTCTTTCTTTAAGTTAAGCAATACATAACCTCACTAGGTGATAGGTGATGAAGCATA 658
|| |||||||||| || |||| ||||| || |||||||||| | ||| | |||||
Sbjct 592 CGATTCTTTCTTTGTTTTGAGCATTACATGACTTCACTAGGTG-T---TGA--A-GCATA 644
Query 659 TATTATACTATCTTCTCCTTTTTTGTAATTCATCGTACGAATCTCATATGTGTTTCTTAT 718
|||| ||||||| |||| ||||| || |||||| ||||||||||||| ||||||||||||
Sbjct 645 TATTCTACTATCATCTC-TTTTT-GTGATTCATAGTACGAATCTCATGTGTGTTTCTTAT 702
Query 719 GGA----A-CTTGGATTC-TAT-T-ACAACTTTATATATAGTTTATTGAGCTT 763
||| | |||||||| ||| | |||||||||||||||||||| |||||||
Sbjct 703 GGATCGGAACTTGGATTAATATATTACAACTTTATATATAGTTTAGTGAGCTT 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5