BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27140.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481601 jgi|Araly1|481601|fgenesh2_kg.4__661__AT2G27140.1 1212 0.0
> Ahg481601 jgi|Araly1|481601|fgenesh2_kg.4__661__AT2G27140.1
Length=828
Score = 1212 bits (656), Expect = 0.0
Identities = 777/834 (93%), Gaps = 13/834 (2%)
Strand=Plus/Plus
Query 13 ACACAAAATCCTCTTATTCTACA-TCAAACCAAGAAAATTATAAAAGATGGAAAGAATTT 71
||||||||||||||||||| | | |||||||||| ||| ||| ||||||| |||||||
Sbjct 1 ACACAAAATCCTCTTATTCCAAATTCAAACCAAG-AAA--CTAAGAGATGGAGAGAATTT 57
Query 72 CTGATCATGCTAATGCTAATCGCATCTACGATGAATTTGAGCCACTCTCAAATTGGAAAA 131
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 58 CTGATCATGCTAATGCTAATCGCATCTACGATGAATTCGAGCCACTCTCAAATTGGAAAA 117
Query 132 CTGAACAAGGATTCGAAGCTCTCACTATTTACCTTCCAGGTTTTAGGAAAGAGCAGCTTA 191
||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 118 CTGAACAAGGATTCGAAACTCTCACTGTTTACCTTCCAGGGTTTAGGAAAGAGCAGCTTA 177
Query 192 AGGTGCAAGTAACCACCACGAGGAAGCTGAGAGTGATGGGAGATCGTCCAGCAGGAGCCA 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGGTGCAAGTAACCACCACGAGGAAGCTGAGAGTGATGGGAGATCGTCCAGCAGGAGCCA 237
Query 252 ACAAATGGATCCGTTTCCGCAAAGAGTTTCCTATTCCGCCAAACATCGACGTCGACTCCG 311
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 238 ACAAATGGATCCGTTTCCGCAAAGAGTTTCCTATTCCTCCAAACATCGACGTTGACTCTG 297
Query 312 TCTCTGCCAAATTCGAAGGCGCAAATCTCGTTGTGAGGCTTCCTAGAACCGAGCCAATGG 371
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 TCTCTGCCAAATTCGAAGGTGCAAATCTCGTTGTGAGGCTTCCTAGATCCGAGCCAATGG 357
Query 372 GCAAACAACCTTCACCTAT--T-GGTACAGCCACAAAACCTCCTCCAGTTCCTAAAGAAA 428
| |||||| |||| ||||| | ||||||||||||||||| |||||||||||||| ||||
Sbjct 358 GTAAACAAACTTCCCCTATAATTGGTACAGCCACAAAACCACCTCCAGTTCCTAAGGAAA 417
Query 429 ACCCCAACCTTCCTAGCCCGTCAGCGAAAGAAAAGGTCCAACCACCAAAGGAAACAAGAG 488
| ||||| |||||||||| | |||| ||||| ||||||||||||||| | ||||||||||
Sbjct 418 ATCCCAAGCTTCCTAGCCAGGCAGCAAAAGAGAAGGTCCAACCACCAGATGAAACAAGAG 477
Query 489 AGA-ATGAAACGGAACTAGAAAAACAGGCCGAGAAGATTCAATCACCAAAGCCAGCAAGA 547
||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 AGAGA-GAAGCGGAACTAGAAAAACAGGCCGAGAAGATTCAATCGCCAAAGCCAGCAAGA 536
Query 548 GAGAACGAAGAAGCTCTTAACCAAGATTACAGAAGTAAAGTGAATGAATACAAGGAGAAT 607
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 537 GAGAATGAAGAAGCCCTTAACCAAGATTATAGAAGTAAAGTGAATGAATACAAGGAAAAT 596
Query 608 CTTGGAGGATATGTGGCACTGATGAAGAATAACAGAACAGCACTTACGGCTGGTGTGGTT 667
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTTGGAGGATATGTTGCACTGATGAAGAATAACAGAACAGCACTTACGGCTGGTGTGGTT 656
Query 668 GTTCCCGCAGCTGCGGTTCTGTTGCTGTCTCTTGGATTCTATGCTGGCCAAATGTTTACT 727
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 657 GTTCCCGCGGCTGCGGTTCTGTTGCTCTCTCTTGGATTCTATGCCGGCCAAATGTTTACT 716
Query 728 TCTTAATTCTTATTTACCTATTTGCATGATTCTCAAAGGAAAATAAAATGTACTAAAATT 787
|||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||| |
Sbjct 717 TCTTAATTCTTATTTACCTATTCGCAGGATTCTCAAAGGCAGATAAAATGTACTAAAACT 776
Query 788 TGCATATAAAACAAATCATTAT-AATAAACATAAC-ACCCCAACATaaaaaaaa 839
||||||||||||||||||| || |||||||| ||| ||||| |||| |||||||
Sbjct 777 TGCATATAAAACAAATCAT-ATTAATAAACA-AACCACCCCTACATTAAAAAAA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5