BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27180.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497300 jgi|Araly1|497300|fgenesh2_kg.172__1__AT2G27180.1 811 0.0
Ahg481606 jgi|Araly1|481606|fgenesh2_kg.4__666__AT2G27180.1 811 0.0
> Ahg497300 jgi|Araly1|497300|fgenesh2_kg.172__1__AT2G27180.1
Length=779
Score = 811 bits (439), Expect = 0.0
Identities = 617/696 (89%), Gaps = 40/696 (6%)
Strand=Plus/Plus
Query 240 AATGACTCGTCACGTGATTTTAAAATCCCCGTTGTTAGTTTCATCGGAAGAATCAACGAT 299
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct 123 AATGACTCGTCACGTGATTTTAAAATCGCCGTTGTTAGCTTCAACGGAAGAATCAACGAT 182
Query 300 GAGAAACTCTCCTCCT-TCGACGACGTCGTTAAGCAAAGAGAGACGAAAAGTTGGAGAGG 358
|||||||||||||||| | ||||||| |||| |||||||||||||| || ||||| ||||
Sbjct 183 GAGAAACTCTCCTCCTAT-GACGACGGCGTTGAGCAAAGAGAGACGCAAGGTTGGGGAGG 241
Query 359 TAGCGGGAGGAGCGGCGGCGGAGTGTGCGGCTGTGTGGTGTTGTTGTCCATGCGCGGTGG 418
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 242 TAGCGGGAGGAGCGGCGGCGGAGTGTGCGGCGGTTTGGTGTTGTTGTCCATGCGCGGTTG 301
Query 419 TGAATCTAATGGTTTTAGCCGTGTATAAAGTTCCGGCCGCGGTTTGTAAAAAAGCTTGGA 478
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 TGAATCTGGTGGTTTTAGCCGTGTATAAAGTTCCGGCGGCGGTTTGTAAAAAAGCTTGGA 361
Query 479 GGCGAAGCAAACGACGACGTTTTACGAGGAAACGACATGGTTTGCTTGCGTCAGCGACGG 538
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GACGAAGTAAACGACGACGTTTTACGAGGAAACGACATGGTTTGCTTGCGTCAGCGACGG 421
Query 539 CGGAAGGAAGCGAAAGTACCGTACACGCTAGATTGAATGAAGAAGATCTAACGGCTGAGA 598
| |||||||| || || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 CAGAAGGAAGTGAGAGCACCGTACACGCTAGATTGAATGGGGAAGATCTAACGGCTGAGA 481
Query 599 TTGTTTTTGAGGAATGTCATGTGAGTGGTGGTGAGTTAAACGACGTCGTCAGGCTTGAAA 658
||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
Sbjct 482 TTGTTTTTGAGGATTGTCAAGTGA---ATGGTGAGTTAAACGACGTCGTTAGGCTTGAGA 538
Query 659 ATGAAATGTTGGATCGTTTCTATGGGGCTGGCTTTTGGAGAAGCCCTTCACAGAAGGACA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 ATGAAATGTTGGATCGTTTCTATGGGGCTGGCTTTTGGAGAAGCCCTTCACAGAGGGACA 598
Query 719 CGTCATCAGGAAGCCTATGAATTCTTCTTCTTATGAGtattttgggttttttgaaagaat 778
||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 599 CGTCATCAGGAAGCCTATGAATTCTTCTT---ATGAGTCTTTTGGGTTTTT-GAAAGAAC 654
Query 779 taatagtaatttatttgttttttattttatttttttGTATGTAAGTTCAATTGTTTTATG 838
|| ||||||||||||| | || | | | || || |||||| |
Sbjct 655 TA-TAGTAATTTATTT-T-----ATGT-A---------A-GT---TT-AATTGT-----G 687
Query 839 TGGGGTATGTGAATAGAAGAACATTGTAGTATACTTTATACATTTTTATTTGTTTTCTGT 898
|||| ||||||||||| ||||| | || || ||||||||| |||||||||||||||||
Sbjct 688 TGGG-TATGTGAATAGGAGAACCT---AGCATCCTTTATACAATTTTATTTGTTTTCTGT 743
Query 899 TCGTTTAAAATGTAACTATGTCTCTTTGTGTCAGAA 934
|||||| ||||||||||||||||| |||||| ||||
Sbjct 744 TCGTTTTAAATGTAACTATGTCTCATTGTGTTAGAA 779
Score = 152 bits (82), Expect = 4e-36
Identities = 96/102 (94%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 86 AAAATGATGAATGACCTTATCAACAACGATGGGTCAATTTTCACTAGATTCTATTTCCTC 145
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 28 AAAATGATGAATGACCTTAT---CAACGATGGGTCAATTTTCACTAGATTCTATTTCCTC 84
Query 146 GGAGATATCTGAGAGAAAAAGGTTATTTCACTAATCGTTAAT 187
||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 85 GGAGAAATCTGAGAGAAAGAGGTTATTTCACTAATCGT-AAT 125
> Ahg481606 jgi|Araly1|481606|fgenesh2_kg.4__666__AT2G27180.1
Length=779
Score = 811 bits (439), Expect = 0.0
Identities = 617/696 (89%), Gaps = 40/696 (6%)
Strand=Plus/Plus
Query 240 AATGACTCGTCACGTGATTTTAAAATCCCCGTTGTTAGTTTCATCGGAAGAATCAACGAT 299
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct 123 AATGACTCGTCACGTGATTTTAAAATCGCCGTTGTTAGCTTCAACGGAAGAATCAACGAT 182
Query 300 GAGAAACTCTCCTCCT-TCGACGACGTCGTTAAGCAAAGAGAGACGAAAAGTTGGAGAGG 358
|||||||||||||||| | ||||||| |||| |||||||||||||| || ||||| ||||
Sbjct 183 GAGAAACTCTCCTCCTAT-GACGACGGCGTTGAGCAAAGAGAGACGCAAGGTTGGGGAGG 241
Query 359 TAGCGGGAGGAGCGGCGGCGGAGTGTGCGGCTGTGTGGTGTTGTTGTCCATGCGCGGTGG 418
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 242 TAGCGGGAGGAGCGGCGGCGGAGTGTGCGGCGGTTTGGTGTTGTTGTCCATGCGCGGTTG 301
Query 419 TGAATCTAATGGTTTTAGCCGTGTATAAAGTTCCGGCCGCGGTTTGTAAAAAAGCTTGGA 478
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 TGAATCTGGTGGTTTTAGCCGTGTATAAAGTTCCGGCGGCGGTTTGTAAAAAAGCTTGGA 361
Query 479 GGCGAAGCAAACGACGACGTTTTACGAGGAAACGACATGGTTTGCTTGCGTCAGCGACGG 538
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GACGAAGTAAACGACGACGTTTTACGAGGAAACGACATGGTTTGCTTGCGTCAGCGACGG 421
Query 539 CGGAAGGAAGCGAAAGTACCGTACACGCTAGATTGAATGAAGAAGATCTAACGGCTGAGA 598
| |||||||| || || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 CAGAAGGAAGTGAGAGCACCGTACACGCTAGATTGAATGGGGAAGATCTAACGGCTGAGA 481
Query 599 TTGTTTTTGAGGAATGTCATGTGAGTGGTGGTGAGTTAAACGACGTCGTCAGGCTTGAAA 658
||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
Sbjct 482 TTGTTTTTGAGGATTGTCAAGTGA---ATGGTGAGTTAAACGACGTCGTTAGGCTTGAGA 538
Query 659 ATGAAATGTTGGATCGTTTCTATGGGGCTGGCTTTTGGAGAAGCCCTTCACAGAAGGACA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 ATGAAATGTTGGATCGTTTCTATGGGGCTGGCTTTTGGAGAAGCCCTTCACAGAGGGACA 598
Query 719 CGTCATCAGGAAGCCTATGAATTCTTCTTCTTATGAGtattttgggttttttgaaagaat 778
||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 599 CGTCATCAGGAAGCCTATGAATTCTTCTT---ATGAGTCTTTTGGGTTTTT-GAAAGAAC 654
Query 779 taatagtaatttatttgttttttattttatttttttGTATGTAAGTTCAATTGTTTTATG 838
|| ||||||||||||| | || | | | || || |||||| |
Sbjct 655 TA-TAGTAATTTATTT-T-----ATGT-A---------A-GT---TT-AATTGT-----G 687
Query 839 TGGGGTATGTGAATAGAAGAACATTGTAGTATACTTTATACATTTTTATTTGTTTTCTGT 898
|||| ||||||||||| ||||| | || || ||||||||| |||||||||||||||||
Sbjct 688 TGGG-TATGTGAATAGGAGAACCT---AGCATCCTTTATACAATTTTATTTGTTTTCTGT 743
Query 899 TCGTTTAAAATGTAACTATGTCTCTTTGTGTCAGAA 934
|||||| ||||||||||||||||| |||||| ||||
Sbjct 744 TCGTTTTAAATGTAACTATGTCTCATTGTGTTAGAA 779
Score = 152 bits (82), Expect = 4e-36
Identities = 96/102 (94%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 86 AAAATGATGAATGACCTTATCAACAACGATGGGTCAATTTTCACTAGATTCTATTTCCTC 145
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 28 AAAATGATGAATGACCTTAT---CAACGATGGGTCAATTTTCACTAGATTCTATTTCCTC 84
Query 146 GGAGATATCTGAGAGAAAAAGGTTATTTCACTAATCGTTAAT 187
||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 85 GGAGAAATCTGAGAGAAAGAGGTTATTTCACTAATCGT-AAT 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5