BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27200.1
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481615 jgi|Araly1|481615|fgenesh2_kg.4__675__AT2G27200.1 2630 0.0
Ahg919585 jgi|Araly1|919585|scaffold_100866.1 1314 0.0
> Ahg481615 jgi|Araly1|481615|fgenesh2_kg.4__675__AT2G27200.1
Length=1808
Score = 2630 bits (1424), Expect = 0.0
Identities = 1643/1745 (94%), Gaps = 30/1745 (2%)
Strand=Plus/Plus
Query 12 AAGGTTTCA-CCGGAGAAGAAAATGGGGAAGAACGAGAAAACATCTCTAGGTCGAGCCTT 70
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAGGTCTCAGCC-GAGAAGAAAATGGGGAAGAACGAGAAAACATCTCTAGGTCGAGCTTT 59
Query 71 AGTGAAGCACCATAACCATATGATCCAGGAAACCAAGGAAAAAGGCAAATCCTACAAAGA 130
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AGTGAAGCACCATAACCATATGATCCAAGAAACCAAGGAAAAAGGCAAATCCTACAAAGA 119
Query 131 TCAACACAAGAAGGTTCTAGAATCCGTGACCGAAGTCAGCGACATCGATGCCATCATCGA 190
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 120 TCAACACAAGAAGGTTCTAGAATCTGTAACCGAAGTCAGCGACATCGATGCCATCATCGA 179
Query 191 ACAAGCCGAAGAAGCTGAACGTCTTTTCGCGATTCATCACGATTCCGCAACTCCTGTTCC 250
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 180 ACAAGCCGAGGAAGCTGAACGGCTTTTCGCGATTCATCACGATTCCGCAACGCCTGTTCC 239
Query 251 TATCAATATGGATACAGGTTCGAGTTCGAGTGGCATAACAGCTAAAGAATGGAAAGAGCA 310
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 240 TATCAATATGGACACAGGTTCGAGTTCAAGTGGTATAACAGCTAAAGAATGGAAAGACCA 299
Query 311 AAGGATGAGAGAAGAGGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGTAGACCTCATTG 370
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 AAGGATGAGAGAAGAGGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGAAGACCTCATTG 359
Query 371 GACACCTAAAATGAATGTGGAGA-AACTTGATGCTAATGAAAAACAAGCTTTTCTCACTT 429
||||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||
Sbjct 360 GACACCTAAAATGAATGTGGA-ACAACTTGATGCTAATGAAAGACAAGCTTTTCTTACTT 418
Query 430 GGCGACGGAAACTTGCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGCGACGGAAACTTGCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGA 478
Query 490 AGAACCTTGATATCTGGAGACAACTTTGGCGAGTGCTTGAACGTAGTGATTTGATTGTTA 549
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 AGAACCTTGACATCTGGAGACAACTTTGGCGAGTGCTTGAACGAAGTGATTTGATTGTTA 538
Query 550 TGGTTGTTGATGCTAGAGATCCTCTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCAC 609
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 539 TGGTTGTTGATGCTAGAGATCCTCTGTTTTACCGTTGTCCTGATCTTGAGGCATATGCAC 598
Query 610 AAGAAATTGATGAGCATaaaaaaaCAATGCTTCTGGTCAACAAGGCAGATCTGTTACCTT 669
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 599 AAGAAATTGATGAGCATAAAAAAACAATGCTTCTGGTCAACAAGGCGGATTTGTTACCTT 658
Query 670 CTTATGTCAGGGAGAAATGGGCGGAATACTTCTCCCGCAACAATATTCTGTTTGTCTTCT 729
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 CTTATGTCAGGGAGAAATGGGCGGAATACTTCTCCCGCAACAATATTCTGTTCGTCTTCT 718
Query 730 GGTCAGCCAAAGCTGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTCAGCCAAAGCTGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAG 778
Query 790 CACCTGATACCACACAGAAGACAGATAACCCAGCTGTGAAAGTATATGGAAGGGACGACC 849
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 779 CACCTGATACCTCTCAGAAGACAGATAACCCAGCTGTGAAAGTATATGGAAGGGATGAGC 838
Query 850 TTTTGGATCGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAG 909
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTGGCTCGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAG 898
Query 910 TTTCCGCAACTTCTACTGAATCACACTGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACC 969
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 TTTCCGCAACTGCTGCTGAATCACACCGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACC 958
Query 970 CGAATGTGGGGAAGAGTTCGACAATCAACGCATTGGTAGGTCAGAAGCGAACTGGTGTCA 1029
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 959 CGAATGTGGGAAAGAGTTCGACAATCAACGCGTTGGTAGGTCAGAAGCGAACAGGTGTCA 1018
Query 1030 CATCTACCCCCGGGAAAACAAAGCATTTCCAGACATTGATAATCTCTGAGGATCTAATGC 1089
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 CATCTACCCCCGGGAAAACGAAGCATTTCCAGACATTGATAATCTCCGAGGATCTAATGC 1078
Query 1090 TCTGCGATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGGTTG 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 TCTGCGATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGATTG 1138
Query 1150 CTTCTGGAGTTCTTCCAATAGACCGGATGACCGAGCACCTTGAAGCTATTAAGGTTGTGG 1209
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 CTTCTGGAGTTCTTCCAATAGACCGGATGACCGAGCACCGTGAAGCTATTAAGGTTGTGG 1198
Query 1210 CTGAACTTGTTCCTCGACATGCCATTGAGGATGTGTACAACATCTCTCTACCTAAACCCA 1269
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTGAACGTGTTCCTCGGCATGCCATTGAGGATGTGTACAACATCTCTCTACCTAAACCCA 1258
Query 1270 AATCCTATGAACCTCAGTCCCGCCCACCTCTTGCCTCAGAGCTTCTAAGAACTTACTGCC 1329
|| |||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1259 AAAGCTATGAGCCTCAGTCACGCCCACCACTTGCATCAGAGCTTCTAAGAACTTACTGCC 1318
Query 1330 TCTCTCGTGGTTATGTTGCCTCTAGTGGACTACCTGATGAGACTAGAGCAGCTAGGCAGA 1389
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1319 TTTCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAGACAAGAGCAGCTAGGCAGA 1378
Query 1390 TTCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGATAACCC 1449
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1379 TTCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGATAACAC 1438
Query 1450 GAGATGATGAAAACGAGACAGCGGATGACACTTTGGGAGCCGAAACAAGAGAAGGTTCAC 1509
|||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||
Sbjct 1439 GAGATGATGAAAACGAGACAGCGGATGATAATATGGGAGCCGAAACACGAGAAGGTTCAC 1498
Query 1510 AGACTGAGAAGAAAGGTGAAGAAGCT-C---C-TAG-TCTTGGTCTTGATCAAGTTCTAG 1563
|| ||||| || |||| |||||||| | | | | |||||||||||||||||||||||
Sbjct 1499 AGCCTGAGGAGGAAGGCAAAGAAGCTACTGGCCTTGGTCTTGGTCTTGATCAAGTTCTAG 1558
Query 1564 ATGATCTTAGCTCGTTTGATCTTGCAAATGGACTTGTGTCTTCCAAAACGAAACAGCACA 1623
||||||| |||||||||||||||||||||||| ||| |||| ||||| |||||||||||
Sbjct 1559 ATGATCTGAGCTCGTTTGATCTTGCAAATGGAATTGGGTCTAACAAAAAGAAACAGCACA 1618
Query 1624 AGAAGTCACATAGGAAACAATGATTCGGTCTTGATGGAACGCCAATTCTGAGAGTTTTCC 1683
||||||||||||| |||| ||||||||||| | | | | | ||||||| |||||
Sbjct 1619 AGAAGTCACATAGAAAACCATGATTCGGTC--G------C-C-AGTGCTGAGAGGTTTCC 1668
Query 1684 TGAAA-C-C---G-AT----CAACAAATGCTCGAATATATGATACAGTTGTGGATTTTTC 1733
|||| | | | || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1669 AGAAATCACAATGCATTGAACAACAAATGCTGGAATATATGATACAGTTGTGGATTTTTC 1728
Query 1734 TTATT 1738
|||||
Sbjct 1729 TTATT 1733
> Ahg919585 jgi|Araly1|919585|scaffold_100866.1
Length=1794
Score = 1314 bits (711), Expect = 0.0
Identities = 1213/1451 (84%), Gaps = 52/1451 (4%)
Strand=Plus/Plus
Query 33 ATGGGGAAGAACGAGAAA-ACATC-TCTAGGTCGAGC-CTTAGTGAAGCACCATAACCAT 89
|||||||||| ||| ||| || || | |||| ||| | | | ||||||||||| ||||||
Sbjct 23 ATGGGGAAGAGCGA-AAAGACGTCGT-TAGGGCGATCAC-TGGTGAAGCACCACAACCAT 79
Query 90 ATGATCCAGGAAACCAAGGAAAAAGGCAAATCCTACAAAG-ATCAACACAAGAAGGTTCT 148
||||| || ||| |||| || |||||||| | |||| ||| ||| || ||||| |||||
Sbjct 80 ATGATTCAAGAATCCAAAGACAAAGGCAAGTACTAC-AAGAATCTTCAGAAGAAAGTTCT 138
Query 149 AGAATCCGTGACCGAAGTCAGCGACATCGATGCCATCATCGAACAAGCCGAAGAAGCTGA 208
|||||||||||||| |||||||||||||| |||||||| || |||||||| || |||||
Sbjct 139 CGAATCCGTGACCGAGGTCAGCGACATCGACGCCATCATTGAGCAAGCCGAGGAGGCTGA 198
Query 209 ACGTCTTTTCGCGATTCATCACGA-TTCCGCAACTCCTGT-TCCTATCAATATGGATACA 266
||||||| | | ||| ||||| | ||| | || ||| | ||| |||||| | || |||
Sbjct 199 GCGTCTTTACACCATTAATCAC-AGCTCCTCCACACCTTTGTCC-ATCAATCTAGACACA 256
Query 267 GGTTCGAGTTCGAGTGGCATAACAGCTAAAGAATGGAAAGAGCAA-AGGATGAGAGAAGA 325
||| || || |||| ||| ||||| |||| |||| ||||||| | || || ||| ||
Sbjct 257 AATTCCAGCTCAAGTGTTATAGCAGCTGAAGAGTGGAGAGAGCAACA-GAAGATAGAGGA 315
Query 326 GGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGTAGACCTCATTGGACACCTAAAATG-A 384
||||||||| || |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct 316 GGCTTTACACGCCAGTAGTCTTCAAGTGCCTCGAAGACCTCCGTGGACACCCGAAATGTC 375
Query 385 ATGT-GGAGAAACTTGATGCTAATGAAAAACAAGCTTTTCTCACTTGGCGACGGAAACTT 443
| || | || |||| |||||||||||||||||||||||||| | |||||| |||| |||
Sbjct 376 A-GTAGAAG-AACTAGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGATGCTT 433
Query 444 GCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGAAGAACCTTGATATC 503
| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 434 GTGAGCCTTGAGGAAAATGAAAAGCTTGTGTTGACTCCATTCGAAAAGAACCTTGACATC 493
Query 504 TGGAGACAACTTTGGCGAGTGCTTGAACGTAGTGATTTGATTGTTATGGTTGTTGATGCT 563
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 494 TGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTTGTTGATGCT 553
Query 564 AGAGATCCTCTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCACAAGAAATTGATGAG 623
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 554 AGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCGAGAAATTGATGAA 613
Query 624 CATaaaaaaaCAATGCTTCTGGTCAACAAGGCAGATCTGTTACCTTCTTATGTCAGGGAG 683
||||| |||| ||||||||| || |||||||| ||||| |||||| || |||||||||||
Sbjct 614 CATAAGAAAATAATGCTTCTAGTTAACAAGGCGGATCTTTTACCTACTGATGTCAGGGAG 673
Query 684 AAATGGGCGGAATACTTCTC-CCGCAACAATATTCTGTTTGTCTTCTGGTCAGCCAAAGC 742
|||||||| || || ||| | || ||||| ||||||||||| ||||||||||||| |||
Sbjct 674 AAATGGGCAGAGTATTTC-CGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCATAGC 732
Query 743 TGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAGCA-CCTGATACCA 801
|||||| |||||||||||||||||| | ||||||| || |||||| || || |||| |
Sbjct 733 TGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGA-CAACCCGATAACT 791
Query 802 CACAGAAGACAGATAACCCAG-C-TG-TGAAAGTATATGGAAGGGACGACCTTTTG-GAT 857
|||||||||||| | |||| | | ||| ||||||| ||||||| || || | |
Sbjct 792 TTCAGAAGACAGATGATCCAGACATTATGA---TATATGGCCGGGACGAGCTGCTGAG-T 847
Query 858 CGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAGTTTCCGCA 917
|| ||| || |||||||||||||||| || ||| | ||||| ||||||| || || | |
Sbjct 848 CGTTTAGAATTTGAGGCTCTAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATC-G-A 905
Query 918 ACTTCTACTGAATCA-CA-CTGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACCCGAATG 975
|| | ||||| | || | | || |||| |||||||| |||||||||||||| ||||
Sbjct 906 -CTG-T--TGAAT-ATCAAC-GTGATCAAGCCGTGGTTGGATTTGTTGGGTACCCAAATG 959
Query 976 TGGGGAAGAGTTCGACAATCAACGCATTGGTAGGTCAGAAGCGAACTGGTGTCACATCTA 1035
| || |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 960 TTGGAAAGAGTTCAACAATCAACGCATTGGTGGGTCAGAAGCGAACAGGTGTCACCTCTA 1019
Query 1036 CCCCCGGGAAAACAAAGCATTTCCAGACAT-TGATAATCTCTGAGGATCTAATGCTCTGC 1094
|||| || |||||||||||||||||||| | |||||||||||||||| || ||||| |||
Sbjct 1020 CCCCAGGAAAAACAAAGCATTTCCAGAC-TCTGATAATCTCTGAGGAGCTTATGCTATGC 1078
Query 1095 GATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGGTTGCTTCT 1154
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 1079 GATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCGAGATATGAAATGATTGCTTCT 1138
Query 1155 GGAGTTCTTCCAATAGACCGGATGACCGAGCACCTTGAAGCTATTAAGGTTGTGGCTGAA 1214
|| || ||||| || ||| ||||||| ||||||| |||||||||| |||| ||||||||
Sbjct 1139 GGTGTCCTTCCGATTGACAGGATGACGGAGCACCGTGAAGCTATTCAGGTGGTGGCTGA- 1197
Query 1215 CTTG-TTCCTCGACATGCCATTGAG-GATGTGTACAACATCTCTCTACCTAAACCCAAAT 1272
| | ||||||||| || ||||||| | ||| |||||||| ||||| ||||||||||||
Sbjct 1198 CAAGGTTCCTCGACGTGTCATTGAGAG-TGTATACAACATTTCTCTTCCTAAACCCAAAA 1256
Query 1273 CCTATGAACCTCAGTCCCGCCCACCTCTTGCCT-CAGAGCTTCTAAGAACTTACTGC-CT 1330
||||||| | |||||||||||| |||| ||| | |||| ||| |||||| |||||| ||
Sbjct 1257 CCTATGAGCGTCAGTCCCGCCCGCCTCATGC-TGCAGAACTTTTAAGAAGTTACTGTGCT 1315
Query 1331 CTCTCGTGGTTATGTTGCCTCTAGTGGACTACCTGATGAGACTAGAGCAGCTAGGCAGAT 1390
|||||||| ||||||||||||||||||||||||||||| || | ||| ||||||| |||
Sbjct 1316 -TCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAAACGAAAGCTGCTAGGCTGAT 1374
Query 1391 TCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGA-TAACCC 1449
||||||||||||||||| ||||||||| || |||| ||||||||| || | || | || |
Sbjct 1375 TCTGAAAGATTACATTGGAGGTAAGCTGCCGCATTATGCAATGCCACCTG-GAATGACAC 1433
Query 1450 GAGATGATGAA 1460
|| |||||||
Sbjct 1434 AAGGTGATGAA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70466953250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5