BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27220.2
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900422 jgi|Araly1|900422|Al_scaffold_0004_1072 1214 0.0
Ahg493837 jgi|Araly1|493837|fgenesh2_kg.7__3270__AT5G41410.1 95.3 1e-18
Ahg932374 jgi|Araly1|932374|scaffold_400362.1 69.4 7e-11
> Ahg900422 jgi|Araly1|900422|Al_scaffold_0004_1072
Length=1305
Score = 1214 bits (657), Expect = 0.0
Identities = 801/869 (92%), Gaps = 15/869 (2%)
Strand=Plus/Plus
Query 489 GGTGGAACAGAGATACAAGCAATACCATGACCAAATGCAGACTATAATCTCATCGTTTGA 548
||| |||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||
Sbjct 435 GGTTGAACAGAGATACGAGCAATACCGTGACCAAATACAGAATATAATCTCATTGTTTGA 494
Query 549 GCAAGCTGCGGGTTTAGGCTCAGCAAACTCATACACACATATGGCGTTACAAACAATATC 608
|||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 495 GCAAGCCGCAGGATTAGGCTCAGCAAACTCATACACACATATGGCGTTTCAAACAATATC 554
Query 609 AAAGCAGTTTCGTGCTGTAAAAGACATGATAAGTTTGCAAATCAAGCAAATAAACAAGCT 668
|||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 555 AAAGCAGTTTCGTGCTGTAAAAGAAATGATATGTTTGCAAATCAAACAAATAAACAAGCT 614
Query 669 CTTGGGACAAAAGGAATTTGACGAGCAGCTTAAGAAGTTGGGAAAGATGGCACATCACCA 728
||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 615 CTTGGGACAAAAGGAATTTGAAGAGCAGCTTAAGCAGTTGGGGAAGATGGCACATCACCA 674
Query 729 TTCAAATGCTTGGAGACCGCAGAGAGGTTTGCCCGAAAAAGCTGTTTCCGTTCTACGCTC 788
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 675 TTCAAATGCTTGGAGACCGCAGAGAGGTTTGCCCGAAAAAGCTGTTTCCGTGCTACGCGC 734
Query 789 TTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGATTTGGATAAGGTAATGCTTGC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGATTTGGATAAGGTAATGCTTGC 794
Query 849 CAAACAGACTGGCCTTACTAAGAGTCAGGTGTCAAATTGGTTCATTAATGCTCGAGTTCG 908
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 795 CAAACAGACTGGCCTTACTAAGAGTCAGGTGTCAAATTGGTTCATAAATGCTCGAGTTCG 854
Query 909 AATGTGGAAGCCACTGGTGGAGGAACTT-TATTCGGAAGAAATGGATATTGAAGAAAGCA 967
||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 855 AATGTGGAAGCCACTGGTGGAGGAA-TTGTATTTGGAAGAAATGGATATTGAAGAAAGCA 913
Query 968 GAAAAGGAAGTGACCGG--T-A---TAGTACCAAAGGTTCATCTTCAAAGCAACCGTACA 1021
||||||||||| ||||| | | |||||| |||||||||||||| |||||||| ||||
Sbjct 914 GAAAAGGAAGTAACCGGAATGAACATAGTACTAAAGGTTCATCTTCTAAGCAACCTTACA 973
Query 1022 ATAATACAACTTCAAATGAATCTTCGAACACGATCCTACCCGCCTTTCGTCAAGGATTCA 1081
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 974 ATAATACAACTTCAGCTGAATCTTCGAACTCGATCTTACCCGCCTTTCGTCAAGAATTCA 1033
Query 1082 CTGAAACTGAAACCCCTAGGCAAAATTCATCCTCAAGTTGCAGCGTAGTCATGAGGTTCA 1141
||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 1034 TTGAAAATGAAACCCCTAGGCAAAATTCATCTTCAAGTTACAGCGTAGT---GAGGTTCA 1090
Query 1142 CG-AAGCAACACATGAATCAAGCGAACTTCATCAATTTCAACGGAGGGTTCGAAAACTAT 1200
| ||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||
Sbjct 1091 -GTAAGCAACACATGAATCATGCTAACTTCATCCATTTCAATGGAGGGTTCGAAAACTAT 1149
Query 1201 CACACAATGGATGGAAACAGCGTCTCCCTTTCCCTCGGCCTGCCTCATTCTTGTGACCAA 1260
||||||||| |||||| | |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1150 TACACAATGGTTGGAAATGGTGTCTCCCTTTCCCTTGGCATGCCTCATTCTTGTGACCAA 1209
Query 1261 ACCTTTAATAACATTCATTTTGAGTCAACAAGTCATGGAACTGAGAACTC-GGCCATATA 1319
||| |||| ||||||||| ||| |||||||||||| |||| ||||| ||| ||| |||||
Sbjct 1210 ACCCTTAAAAACATTCATATTGGGTCAACAAGTCAAGGAAGTGAGATCTCAGGC-ATATA 1268
Query 1320 TTCATCTTCAACTTATCAAATCATGGATT 1348
| | |||||||||||||||||||||||||
Sbjct 1269 TCCCTCTTCAACTTATCAAATCATGGATT 1297
Score = 604 bits (327), Expect = 4e-172
Identities = 402/439 (92%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCTTTCTTTCTTGGAGAATCTGAAATGAGAGAACACTCTTCTGATCTTTTTATG 60
|||||||||||||| | |||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1 ATGGCTGCTTTCTTCCATGGAGAATCTGAGATGAGAGAACCCTTTTCTGATCTTTTTATG 60
Query 61 ATGACTCTGAATCCGTTTCGCGAGCAGACAACGACCACTAATGCTCATGACGATCACT-T 119
|||| |||||||||||| | ||||| |||||| || |||||||||||| || |||| | |
Sbjct 61 ATGAATCTGAATCCGTTCCTCGAGCCGACAACAACTACTAATGCTCATAACCATCA-TGT 119
Query 120 CTACAACTTGTGCTTTGGTTCCCAACAATATAGACCTCGAGATGAAGTAGGTCATATAGA 179
|||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||
Sbjct 120 CTACAACTTGTGCTTTGGTTTCCAACAACATAGACCGCGAGATGAAGTAGATCATATAGA 179
Query 180 ACAAGGAAATTCTTCCATCTCCACTTTTTCAAACGGAGGAGTCTTCAGGGCTTTGGCTCC 239
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 ACAAGGAAATTCTTCCATCTCCACGTTTTCAAACGGAGGAGTCTTCAGAGCTTTGGCTCC 239
Query 240 GATCTACTTGAAAGCGGCTCAAGAATTACTCAATGAGATTGTCAATGTTGGAAACGGTAG 299
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GATCTACTTGAGAGCTGCTCAAGAATTACTCAATGAGATTGTCAACGTTGGAAACGGTAG 299
Query 300 CCACGGCGCAAAACAAGAGCGACCGGTGAGTAAAGAGTCCACGATTTATGGAGTTGAGGA 359
||| || ||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 300 CCATGGGGCAAAACAAGATCGACCGATGAGTAAAGAGTCCACGATTTATGGAGTTGGGGA 359
Query 360 CATCAATGGTGGCTATAAGCCTGGCGTAGCTGCTTTGCAAATGAAGAAAGCAAAACTCAT 419
||||||||||||| ||||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 360 CATCAATGGTGGCCATAAGCCTGGCATGGCTTCTTTGCAAATGAAGAAAGCAAAGCTCAT 419
Query 420 CTCCATGGGTGAAATGGTT 438
||||||| ||||| ||||
Sbjct 420 TTCCATGGTTGAAACGGTT 438
> Ahg493837 jgi|Araly1|493837|fgenesh2_kg.7__3270__AT5G41410.1
Length=2443
Score = 95.3 bits (51), Expect = 1e-18
Identities = 131/168 (78%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 788 CTTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGAT-TTGGATAAGGTA-ATGCT 845
||||||||||||| || |||||||| |||||||| || ||| || ||||| | | || |
Sbjct 1599 CTTGGCTCTTTGAACACTTTCTTCACCCATATCCAAGCGATGTT-GATAA-GCATAT-AT 1655
Query 846 T-GCCAAACAGACTGGCCTTACT-AAG-AGTCAGGTGTCAAATTGGTTCATTAATGCTCG 902
| ||| ||| ||||| ||| | ||| ||||||||||||||||||||||||||||| |
Sbjct 1656 TGGCCCGACAAACTGG-TTTA-TCAAGAAGTCAGGTGTCAAATTGGTTCATTAATGCAAG 1713
Query 903 AGTTCGAATGTGGAAGCCACTGGTGGAGGAACTTTATTCG-GAAGAAA 949
|||| | | ||||| ||| || | || ||| | || | | |||||||
Sbjct 1714 AGTTAGGCTATGGAAACCAATGATTGAAGAAATGTACT-GTGAAGAAA 1760
> Ahg932374 jgi|Araly1|932374|scaffold_400362.1
Length=1922
Score = 69.4 bits (37), Expect = 7e-11
Identities = 112/146 (77%), Gaps = 14/146 (10%)
Strand=Plus/Plus
Query 788 CTTGGCTCTTT-GAGCATTTTCTTCATCCATATCCGAGGGAT-TTGGATAAGGTA-ATGC 844
||||||| ||| || ||||||||| |||| || || || ||| | ||||| | | | |
Sbjct 1306 CTTGGCT-TTTCGAACATTTTCTTAATCCGTACCCAAGCGATGCT-GATAA-GCACCT-C 1361
Query 845 TT-GCCA-AACAGACTGGCCTTACT-AAG-AGTCAGGTGTCAAATTGGTTCATTAATGCT 900
|| | || ||||||||| ||| | || | ||||||||||||||||||||||||||||
Sbjct 1362 TTAG-CACGACAGACTGG-TTTA-TCCAGAAATCAGGTGTCAAATTGGTTCATTAATGCT 1418
Query 901 CGAGTTCGAATGTGGAAGCCACTGGT 926
| ||||| | ||||| ||| ||||
Sbjct 1419 AGGGTTCGTCTATGGAAACCAATGGT 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5