BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27240.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344480 jgi|Araly1|344480|fgenesh1_pg.C_scaffold_4000822 1280 0.0
Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697 542 3e-153
> Ahg344480 jgi|Araly1|344480|fgenesh1_pg.C_scaffold_4000822
Length=1458
Score = 1280 bits (693), Expect = 0.0
Identities = 781/824 (95%), Gaps = 3/824 (0%)
Strand=Plus/Plus
Query 693 AGATTTTGGGGACAAGTATTGTGAAGTGGTAGAAAATGATGGCGCCAAAGAGGTTGACAA 752
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 615 AGATTTTGGGGACAAATATTGTGAAGTGGTAGAAAATGATGACACCAAAGAGGTTGACAA 674
Query 753 ACGAAAAAAGGATTTTGACAACTATAAAAGTGTTCTCAACTCAAAAAGCAATGAAGAATC 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ACGAAAAAAGGATTTTGACAACTATAAAAGTGTTCTCAACTCAAAAAGCAATGAAGAATC 734
Query 813 TTTGGCTAATTTTGCAAAATGGGAACCTGGTCACGGCCAATTCAGATTCCGGCATCCTTG 872
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TTTGGCTAATTTTGCGAAATGGGAACCTGGTCACGGCCAATTCAGATTCCGGCATCCTTG 794
Query 873 GAAACAATACCTAGCTGTCGGTGAATTAATCCGACAATGTGCTTACCGAATTCATGCCCT 932
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 795 GAAACAATATCTAGCTGTCGGTGAATTAATCCGACAATGTGCTTACAGAATTCATACCCT 854
Query 933 GAATTCAT-AT--CTTAATGCAGATAATCAGGTTTCAGTTGATATTAAAAAGAAACTAGG 989
|||||||| || ||||||||||||||| |||| ||| ||||||||||||||||||| ||
Sbjct 855 GAATTCATCATATCTTAATGCAGATAATAAGGTGTCAATTGATATTAAAAAGAAACTTGG 914
Query 990 AGAACCATTGAGAAGAATGAGTTTGGAGTCCGGCAAAGCGATGAAAGAAATGTCAATTTC 1049
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 915 AGAACCATTGAGAAGAATGAGTTTGGAGTCTGGCAAAGCGATGAAAGAAATGTCAATTTC 974
Query 1050 GTTAAAGAAAATGACTAAACCATCTTCTTCTGATCTTCATGTCCAAAACGCAAAATCTGC 1109
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 975 ATTGAAGAAAATGACCAAACCATCTTCTTCTGATCTTCATGTCCAAAACGCAAGATCTGC 1034
Query 1110 CTGTAAATCACTCACCAACTTACTTAATTCAGGCATCTTGAAAGAAGTTGAGCCTCTAGA 1169
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1035 CTCCAAATCACTCACCAACTTACTTAATTCAGGCATCTTGAAAGAAGTTGAGCCACTAGA 1094
Query 1170 ATTGGTCTCCCTTCTGACCGCGATCTCCTTGCTCATCGATATTATAAACCTAACAGAGAA 1229
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1095 ATTGGTCTCACTTCTGACCGCGATTTCCTTGCTCATCGATATTATAAACCTGACAGAGAA 1154
Query 1230 AATCTTGGAATCCCTACATGAACTAGCAACCGCTGCAAAATTTAAGAACAAGATTGAACA 1289
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1155 AATCTTGGAAGCCCTACATGAACTAGCATCCGCTGCAAAATTTAAGAACAAGATTGAACA 1214
Query 1290 TCCTTTGTTTTCCGAGAAACCAAAAGCCAAAAGCTTTGTTAGTGTCCGATCGATCAAATG 1349
||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||
Sbjct 1215 GCCTTTGTTTTCCGAGAAACAAAAAGCCAAAAGCTTTGTTAGTCTCCGGTCGATAAAATG 1274
Query 1350 TCATGATGATCATGTGGTCATAATTATTGAAGATGATGGTAATAATGATGACACATCAAA 1409
||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1275 TCATGATGAGCATGTGGTCACAATTATTGAAGATGATGGTAATAATCATGACACATCAAA 1334
Query 1410 AAATGATAATGGCTCGAAGGAGGTTTCGATCCATGAGAAACATGAAGACGATGATACGCA 1469
||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1335 AAATGATAACCGCTCGAAGGAGGTTTCAATCCATGAGAAACATGAAGACGGTGATACGCA 1394
Query 1470 TGTAGACGCAAGATGTGTTTCATGTGGTCACACAAGCGTTTGTG 1513
||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1395 TGTCCACGCAAGATGTGTTTCATGTGGTCACACAATTGTTTGTG 1438
Score = 994 bits (538), Expect = 0.0
Identities = 590/616 (96%), Gaps = 0/616 (0%)
Strand=Plus/Plus
Query 1 ATGgaaaaagtgagagagattgtgagagaagggagaagagtggcaaaagaagacccgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAAAGTGAGAGAGATTGTGAGAGAAGGGAGAAGAGTGGCAAAAGAAGACCCGAGG 60
Query 61 agagTAGTTCACTCGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTACTAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGAGTAGTTCACTCGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTATTAT 120
Query 121 TACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTGTT 180
Query 181 GTCGTCTTCGAGTTCTCTGTTGGGGCCACGCTTGGTAAAGGACTTAACAGAGTGGCGGCA 240
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 181 GTCGTCTTCGAGTTCTCTGTTGGAGCCACGCTCGGTAAAGGTCTTAACAGAGTGGCGGCA 240
Query 241 ACACTATTTGCGGGGGGACTTGGAATCGGAGCTCATCACCTGGCCAGCATGTCTGGTCCG 300
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 ACACTATTTGCTGGGGGACTTGGAATCGGAGCTCATCACCTGGCTAGCATGTCTGGCCCA 300
Query 301 ACAGGAGAACCCATTCTTCTCGCAGTCTTTGTCTTTGTACAAGCTGCGTTGTCGACGTTT 360
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 301 ACAGGAGAACCCATTCTTCTCGCAATCTTTGTCTTTGTACAAGCTGCCTTGTCGACGTTT 360
Query 361 GTGAGGTTCTTCCCGCGGGTGAAGGCTAGATACGATTACAGTCTGCTGATATTCATACTC 420
|||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||
Sbjct 361 GTGAGGTTCTTCCCGCGGGTGAAGGCGAGATACGATTACAGCCTGTTGATTTTCATACTC 420
Query 421 ACCTTTGCGTTGATATCAGTGTCGGGGTTCAGAGAAGAGCAGGTTGTAAAGCTGACCCAT 480
|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||
Sbjct 421 ACCTTTGCGTTGATATCAGTGTCGGGATTCAGAGAGGAGCAGGTTGTAATGCTGACGCAT 480
Query 481 AAGAGAATTTCCACAGTGATCATAGGAGGACTAAGTTGCGTCATTATCTCCATCTTTGTC 540
|||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 481 AAGAGAATCTCCACAGTGATCATCGGAGGACTAAGTTGTGTCCTTATCTCCATCTTTGTC 540
Query 541 TGCCCTGTTTGGGCCGGCCAAGATCTTCATTCACTCATAGCCTCTAACTTTGAGAAACTC 600
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TGCCCCGTCTGGGCCGGCCAAGATCTTCATTCACTCCTAGCCTCTAACTTTGAGAAACTC 600
Query 601 TCATTTTTCTTGTTAG 616
|| |||||||||||||
Sbjct 601 TCCTTTTTCTTGTTAG 616
> Ahg334132 jgi|Araly1|334132|fgenesh1_pg.C_scaffold_1000697
Length=1506
Score = 542 bits (293), Expect = 3e-153
Identities = 498/598 (83%), Gaps = 10/598 (2%)
Strand=Plus/Plus
Query 1 ATGgaaaaagtgagagagattgtgagagaagggagaagagt-ggcaaaagaagacccgag 59
||||| |||||||||||||| ||||||||||| |||||||| || ||||||||| |||||
Sbjct 1 ATGGAGAAAGTGAGAGAGATAGTGAGAGAAGGCAGAAGAGTAGG-AAAAGAAGATCCGAG 59
Query 60 gagagTAGTTCACTCGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTACTA 119
|||||||| ||| | ||||||||||| || | |||||| || |||||||||||||| ||
Sbjct 60 AAGAGTAGTGCACGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTA 119
Query 120 TTACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTGT 179
|| ||||||||||||||| | ||||||||| |||||||||||||| || ||||| || ||
Sbjct 120 TTGCCAACCTCTCTACGATAACTTCGGTGTCAATGCAATGTGGGCAGTCATGACCGTCGT 179
Query 180 TGTCGTCTTCGAGTTCTCTGTTGGGGCCACGCTTGGTAAAGGACTTAACAGAGTGGCGGC 239
||||||||| || |||||||| |||||||| ||||| |||||||| || |||| | |||
Sbjct 180 TGTCGTCTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAGAGCAGTGGC 239
Query 240 AACACTATTTGCGGGGGGACTTGGAATCGGAGCTCATCACCTGGCCAGCATGTCTGGTCC 299
|||| | | || || ||||| || || ||||| |||||||| || || |||| || ||
Sbjct 240 AACATTGGTAGCAGGAGGACTAGGGATTGGAGCGCATCACCTAGCAAGTTTGTCCGGGCC 299
Query 300 GACAGGAGAACCCATTCTTCTCG-CAGTCTTTGTCTTTGTACAAGCTGCGTTGTCGACGT 358
|||| ||||||||||||||| | || ||||||||||||| |||||||| ||||||||||
Sbjct 300 AACAGTAGAACCCATTCTTCTTGCCA-TCTTTGTCTTTGTGCAAGCTGCATTGTCGACGT 358
Query 359 TTGTGAGGTTCTTCCCGCGGGTGAAGGCTAGATACGATTACAGTCTGCTGATATTCATAC 418
|||||||||||||||||||||||||||| ||||| ||||| | | |||||||||||
Sbjct 359 TTGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATATGATTATGGGGTATTGATATTCATAT 418
Query 419 TCACCTTTGCGTTGATATCAGTGTCGGGGTTCAGAGAAGA-GCAGGT-TGTAAAGCTGAC 476
| || || || ||||||||||||||||||| ||||| || | || | | || | || |
Sbjct 419 TGACGTTCGCACTGATATCAGTGTCGGGGTTTAGAGAGGACG-AGATAT-TAGATTTGGC 476
Query 477 CCATAAGAGAATTTCCACAGTGATCATAGGAGGACTAAGTTGCGT-CATTATCTCCATCT 535
||||||||| | || |||||||| || |||||| | |||||||| | ||||||| ||||
Sbjct 477 GCATAAGAGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTAC-TTATCTCTATCT 535
Query 536 TTGTCTGCCCTGTTTGGGCCGGCCAAGATCTTCATTCACTCATAGCCTCTAACTTTGA 593
||||||||||||||||||| || ||||| |||||||| ||| | ||||| ||||||||
Sbjct 536 TTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCCAACTTTGA 593
Score = 403 bits (218), Expect = 2e-111
Identities = 483/607 (80%), Gaps = 34/607 (6%)
Strand=Plus/Plus
Query 693 AGATTTTGGGGAC-AAGTATTGTGAAGTGGTAGAAAATGATGG-CGCCAAAGAGGTTGAC 750
||| ||||||||| || |||| ||||| | ||| ||| || | ||||||||| ||
Sbjct 615 AGAATTTGGGGACGAA-TATTTTGAAGCGACAGAGGATG-GGGACATCAAAGAGGTGGA- 671
Query 751 AAACGA-AAAAAGG-ATTTTGACA-ACTATAAAAGTGTTCTCAACTCAAAAAGCAATGAA 807
|| || | |||| || |||| | | |||||||||||||||||||||||||||||||||
Sbjct 672 GAA-GAGGAGAAGGAATCTTGAGAGA-TATAAAAGTGTTCTCAACTCAAAAAGCAATGAA 729
Query 808 GAATCTTTGGCTAATTTTGCAAAATGGGAACCTG-GTCACGGCCAATTCAGATTCCGGCA 866
||| ||||||||||||| |||||||||||||| | |||| |||||||| ||||| |||||
Sbjct 730 GAAGCTTTGGCTAATTTCGCAAAATGGGAACC-GCGTCATGGCCAATTTAGATTTCGGCA 788
Query 867 TCCTTGGAAACAATACCTAGCTGTCGGTGAATTAATCCGACAATGTGCTTACCGAATTCA 926
||| ||||||||||| | || || |||| |||| |||| |||||||||| ||| ||| |
Sbjct 789 TCCATGGAAACAATATATTGCCGTGGGTGCATTACTCCGGCAATGTGCTTGCCGGATTGA 848
Query 927 TGCCCTGAATTCATATCTT-AA-TGCAGATAAT-CAGGTTTCAGTTGATATTAAAAAGAA 983
|||| |||||||| | | | || | |||||| | ||| | || | || |||||||| ||
Sbjct 849 TGCCTTGAATTCAAA-CATCAACT-CAGATA-TGCAGATCCCAATGGACATTAAAAAAAA 905
Query 984 ACTAGGAG-AACCATTGAGAAGAATGAGTTTGGAGTCCGGCAAAG-CGATGAAAGAAATG 1041
| ||| || ||||||| ||||||||||| | |||||| || || | | ||||||||| ||
Sbjct 906 ATTAG-AGGAACCATTAAGAAGAATGAGCTCGGAGTCGGGGAA-GTCAATGAAAGAAGTG 963
Query 1042 TCAATTTCGTTAAAGAAAATGACTAAACCATCTTCTTCTGATCTTCATGTCCAAAACGCA 1101
|| ||||| |||||||||||||| ||| ||||||||| |||| | |||||| |||| ||
Sbjct 964 TCCATTTCATTAAAGAAAATGACAAAATCATCTTCTTTTGATATCCATGTCGTAAACTCA 1023
Query 1102 AAATCTGCCTGTAAATCACTCACCAACTT-ACTTAATTCAGGCATCTTGAAAGAAGTTGA 1160
|||||||||| ||| | || | ||||| |||||| ||||||||||| ||||| |||||
Sbjct 1024 CAATCTGCCTGCAAAACTCTTTC-AACTTTACTTAAATCAGGCATCTTAAAAGATGTTGA 1082
Query 1161 GCCTCTAGAATTGGTCTCCCTTC-TGACCG-C-GATCTC-CTTGCTCATCGATATTATAA 1216
||||||| || || |||| || |||| | | | |||| || | |||| || ||| | |
Sbjct 1083 GCCTCTACAAATGATCTCA-TTGATGAC-GACAG-TCTCTCT-GTTCATTGACATTGTTA 1138
Query 1217 ACCTAACAGAGAAA-ATCTTGGAATCCCTACATGAACTAGCAACCGCTGCAAAATTTAAG 1275
| |||| || ||| |||| |||||| ||||||| || ||| |||| ||||||||||||
Sbjct 1139 ATTTAACCGA-AAAGATCTCAGAATCCGTACATGAGCTTGCATCCGCAGCAAAATTTAAG 1197
Query 1276 AACAAGA 1282
|||||||
Sbjct 1198 AACAAGA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5