BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27250.3
Length=516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900425 jgi|Araly1|900425|Al_scaffold_0004_1075 324 5e-88
> Ahg900425 jgi|Araly1|900425|Al_scaffold_0004_1075
Length=282
Score = 324 bits (175), Expect = 5e-88
Identities = 243/274 (89%), Gaps = 11/274 (4%)
Strand=Plus/Plus
Query 26 ATGGATTCGAAG-AGTTTTCTGCTACTACTACTACTCTTCTGCTTCTTGTTCCTTCATGA 84
|||||||| ||| ||| || ||||||| | |||||||||||| ||||||||||||||||
Sbjct 1 ATGGATTC-AAGAAGTCTTGTGCTACT-C--CTACTCTTCTGCCTCTTGTTCCTTCATGA 56
Query 85 TGCTTCTGATCTCACTCAAGCTCATGCTCACGTTCAAGGACTTTCCAACCGCAAGATGAT 144
|||||||| ||||||||| ||| |||||||| |||| |||||| || ||||||||||||
Sbjct 57 TGCTTCTGGTCTCACTCACGCTAATGCTCACATTCATGGACTTCCCTCCCGCAAGATGAT 116
Query 145 GATGATGAAAATGGAAAGTGAATGGGTTGGAGCAAATGGAGAAGCAGAGAAGGCAAAGAC 204
|| | | ||||| || |||||||| ||||| |||||||||| ||||||||| ||||
Sbjct 117 GA--A-G---ATGGAGAGGGAATGGGTAGGAGCTAATGGAGAAGAAGAGAAGGCGAAGAA 170
Query 205 GAAGGGTTTAGGACTACATGAAGAGTTAAGGACTGTTCCTTCGGGACCTGACCCGTTGCA 264
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 171 GAAGGGTTTAGGACTACATGAAGAGCTAAGGACTGTTCCTTCAGGACCTGACCCGTTGCA 230
Query 265 CCATCATGTGAACCCACCAAGACAGCCAAGAAAC 298
||||||||||||||||||||||||||||||||||
Sbjct 231 CCATCATGTGAACCCACCAAGACAGCCAAGAAAC 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18772549788
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5