BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27260.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481623 jgi|Araly1|481623|fgenesh2_kg.4__683__AT2G27260.1 1190 0.0
> Ahg481623 jgi|Araly1|481623|fgenesh2_kg.4__683__AT2G27260.1
Length=865
Score = 1190 bits (644), Expect = 0.0
Identities = 759/812 (93%), Gaps = 18/812 (2%)
Strand=Plus/Plus
Query 93 CaaaaaaaaCAAATCAAAAGCTATGCAAGATCCATCACGACCCGCTACAGGTTACCCATA 152
||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 59 CAAAAAACTCAAATCAAAAGCTATGCAAGATCCACCACGACCCGCTACCGGTTACCCATA 118
Query 153 CCCATACCCATACCCGAATCCACAACAACAACAACCACCCACCAACGGGTACCCAAACCC 212
||||||||||||||| || || | |||||||| ||||||||||||||| |||||||||||
Sbjct 119 CCCATACCCATACCC-AAACC-C-ACAACAACCACCACCCACCAACGGTTACCCAAACCC 175
Query 213 CGCCGCCGGAACCGCTTACCCCTACCAAAACCACAACCCATACTACGCGCCA---CAACC 269
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 176 CGCCACCGGAACCGCTTACCCCTACCAAAACCACAACCCATACTACGCACCACCTCAACC 235
Query 270 AAACCCACGCGCCGTCATAATCCGCCGTCTCTTCATCGTCTTCACAACATTCCTCCTACT 329
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 236 AAACCCACGCGCCGTCATAATCCGCCGTCTCTTCATCGTCTTCATGACATTCCTCCTAAT 295
Query 330 CCTAGGTCTAATCCTCTTCATCTTCTTCCTAATCGTTCGTCCTCAACTACCAGACGTTAA 389
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 296 CCTAGGTCTAATCCTCTTCATCTTCTTCCTAATCGTTCGTCCTCAATTACCAGACGTTTA 355
Query 390 CCTAAACTCACTCTCCGTCTCCAATTTCAATGTCTCCAACAATCAAGTCTCTGGTAAATG 449
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 356 CCTAAACTCACTCTCCGTCTCCAATTTCAACGTCTCCAACAATCAAGTCTCTGGTAAATG 415
Query 450 GGATCTTCAACTCCAATTTCGAAACCCTAATTCAAAGATGTCACTTCACTACGA-GACTG 508
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 416 GGATCTTCAAGTCCAATTTCGAAACCCTAATTCAAAGATGTCACTTCACTACGATG-CTG 474
Query 509 CTCTTTGCGCTATGTATTACAATCGTGTCTCTCTATCCGAGACTAGGTTACAACCGTTTG 568
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 475 CTCTTTGTGCTATGTATTACAATCGTGTTTCTCTATCTGAGACTAGGTTACAACCGTTTG 534
Query 569 ATCAAGGGAAGAAAGATCAAACGGTGGTTAATGCGACTCTCTCTGTTTCTGGTACTTATG 628
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATCAAGGAAAGAAAGATCAAACGGTGGTTAATGCGACTCTCTCTGTTTCTGGTACTTATG 594
Query 629 TTGATGGACGTTTGGTTGATTCTATTGGTAAAGAGAGAAGTGTTAAAGGAAATGTTGAGT 688
|||||||| | || | |||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 595 TTGATGGAAGATTAGCTGATTCTATTGGGAAAGAGAGAAGTGTTACAGGAAGTGTTGAGT 654
Query 689 TTGATTTGAGGATGATTTCTTATGTTACGTTTCGATACGGTGCGTTTCGGAGGAGGAGAT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 TTGATTTGAGGATGATTTCTTATGTTACGTTTCGATACGGTGCGTTTCGGAGGCGGAGAT 714
Query 749 ATGTTACTGTGTATTGTGATGATGTTGCTGTTGGTGTTCCGGTGAGTAGTGGTGAAGGGA 808
||||||| || |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 715 ATGTTACGGTTTATTGTGATGATGTTGATGTTGGTGTTCCGGTGAGTAGTGGTTCAGGGA 774
Query 809 AGATGGTTGGTTCGTCTAAGAGATGCAAAACTTATTGAGTTTTA---------GGGATAT 859
||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 775 AGATGGTTGGTTCTTCTAAGAGATGCAAAACTTATTGAGTTTTATTCACTTTAGGGATAT 834
Query 860 TATCTTTGACTAATCTTTTGTAAATCGACTAT 891
|||||| ||||||||||||||||||||||||
Sbjct 835 TATCTTA-ACTAATCTTTTGTAAATCGACTAT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5