BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27270.1

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320520 jgi|Araly1|320520|fgenesh1_pm.C_scaffold_4000577           475    2e-133


> Ahg320520 jgi|Araly1|320520|fgenesh1_pm.C_scaffold_4000577
Length=582

 Score =  475 bits (257),  Expect = 2e-133
 Identities = 388/449 (86%), Gaps = 18/449 (4%)
 Strand=Plus/Plus

Query  329  TTCCACGGTTCATGCTCGAGGATCTCTACGTTGATCCCCTCTCAAACACAAGTGTAATTG  388
            |||||| ||||||||||||||||||||||||||||  |||| ||  | |||||||| |||
Sbjct  146  TTCCACAGTTCATGCTCGAGGATCTCTACGTTGAT--CCTCACAGTC-CAAGTGTATTTG  202

Query  389  TGAAACTGTCATCGACCAACCCAAGCTACAAGTCAAGTGTTTACTACAGAAAAATAAGTC  448
            | || |||||||| ||||||||||||| ||||||||||||||||||||| ||| | ||||
Sbjct  203  TTAATCTGTCATCTACCAACCCAAGCTCCAAGTCAAGTGTTTACTACAGCAAACTGAGTC  262

Query  449  TACACGTCCTAGTCGGAGAAAAATTCGAGACAGAGAGTGtttttttGCAAAGCAGGCGTC  508
            ||||||||||||||  || | | ||||||||||||| |||||| |||||||||| ||| |
Sbjct  263  TACACGTCCTAGTCCCAGGAGACTTCGAGACAGAGACTGTTTTCTTGCAAAGCAAGCGGC  322

Query  509  AGGAGCCTCGT-ACAGTTA-GGCTTTGGACAGCGGTCATAGCAAACAATAACGACAA-CG  565
            || |||||||| | ||||| | | ||||||||||||  ||||||||||||||||||| | 
Sbjct  323  AGAAGCCTCGTGA-AGTTACGAC-TTGGACAGCGGTTGTAGCAAACAATAACGACAATC-  379

Query  566  GTAAGCCGACCGGGGCTTTTCTTGTGAGACACGGTA-TGTACTACGGTCACGTTATAGCC  624
             ||||| |||| ||| ||||||||| || ||||||| ||  | ||||| |||||||||||
Sbjct  380  TTAAGCGGACCTGGGATTTTCTTGTCAGCCACGGTATTG-CCGACGGTTACGTTATAGCC  438

Query  625  GATATAGTGTTCCAATGGAAGAGTGGGATCTTCTCGTTCA-AAGAGTTCGGTTTGCACGT  683
            ||||||  |||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct  439  GATATAAAGTTCCAATGGAAGAGTGGGATCTTCTCGTTCAGAA-AGTTTGGTTTGCACGT  497

Query  684  AAGATGTCCGGTTCTGCTCAGATTGGAAGATTTAAGCTCCGCAACTATCAGAGCAGGGT-  742
            ||||||||||||| |||||| |||||| |||||||||||| |||    |||||||| || 
Sbjct  498  AAGATGTCCGGTTTTGCTCATATTGGACGATTTAAGCTCCACAAG---CAGAGCAGTGTT  554

Query  743  CCACTTGTTCTCAACACTTCCATCTTTAA  771
            || ||||||||||||||||||||||||||
Sbjct  555  CC-CTTGTTCTCAACACTTCCATCTTTAA  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31260791940


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5