BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27280.1 Length=1284 Score E Sequences producing significant alignments: (Bits) Value Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1 1770 0.0 Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1 765 0.0 > Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1 Length=1263 Score = 1770 bits (958), Expect = 0.0 Identities = 1172/1272 (92%), Gaps = 28/1272 (2%) Strand=Plus/Plus Query 27 ACCTTTTAGTGCAAGTTTTAATCCTTCAAACCCATTAGGGTTTTTAGAGAATGTCCTTGA 86 ||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||| Sbjct 6 ACCTTTTAGTGCAAGTTTTGATTCTTCAAACCCATTAGGGTTTTTGGAGAAAGTCCTTGA 65 Query 87 CTTTATTGGGAAAGAGAGTAACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGA 146 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 66 CTTTATTGGGAAAGAGAGCAACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGA 125 Query 147 TGCTGTTACTACCGCAAAGGAGAGGTTGAGGGAAAC-G-G-AGAAG-A-A-GACGGAGTC 200 ||||||||| ||| |||||||||||||||||| | | | ||||| | | ||||||||| Sbjct 126 TGCTGTTACGGCCGTGAAGGAGAGGTTGAGGGAAGCAGAGAAGAAGAAGATGACGGAGTC 185 Query 201 CATGGATGTGGAGAAGGTTAGACCCTCGACATTGCCGTTTAATGCAAGTTTTGATCCTTC 260 |||||| ||||||||||| ||| ||||||| |||||||||||| || ||||||||| ||| Sbjct 186 CATGGAGGTGGAGAAGGTGAGAGCCTCGACGTTGCCGTTTAATTCACGTTTTGATCTTTC 245 Query 261 AGATCCATTAGGGTTCTTGGAGAAAGTCTTTGAATTTGTTGGG-AAGAAGAGCAATTTTC 319 ||| ||||||||||| ||| |||||||| |||| ||| ||||| ||| |||||||||||| Sbjct 246 AGACCCATTAGGGTTTTTGAAGAAAGTCCTTGACTTTATTGGGAAAG-AGAGCAATTTTC 304 Query 320 T-AGTGAAAGACAAGGCTGTGAATGCGATCATCACTGCTGTTACGGACGCCAAGGAGAGG 378 | || | |||||||||||| ||| | |||||| || |||||||||| ||| ||||| ||| Sbjct 305 TAAG-GCAAGACAAGGCTGAGAAGGAGATCATTACCGCTGTTACGGCCGCGAAGGATAGG 363 Query 379 TTGAA-GGAAGAGGAGAAGGAGAGTGTAAAGCAAGCAACAGTA-AAGATTAAGAAGTACG 436 || || ||||| ||||||||||||||||||||||||||||| | |||||||| ||||||| Sbjct 364 TT-AAGGGAAGCGGAGAAGGAGAGTGTAAAGCAAGCAACAG-AGAAGATTAACAAGTACG 421 Query 437 GACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCTCGACCTCTACTTCGGA 496 ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| Sbjct 422 GACTGCAAATTAGGGCTCCGTCACAGAAAAAACAGTCATCATCTCGACCTCCACTTCGGA 481 Query 497 CTGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGAGAAGGAGATTTCTCGAC 556 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 482 CTGCTTCAATATTTGGTGAGGATGATGAAGACAACGATGTCGAGAAGGAGATTTCTCGAC 541 Query 557 AAGCTTCAAAGACCAAGTCTCTTAAAAAGATTGAGAAGCAGCATAAGAAAGCTATAG-AG 615 ||||||||||||||||| ||||||||||||||||| |||| |||||||||||| | | || Sbjct 542 AAGCTTCAAAGACCAAGGCTCTTAAAAAGATTGAGGAGCAACATAAGAAAGCT-TTGAAG 600 Query 616 GAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGACATTAAACATGAAGCGGCT 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 601 GAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGACATTAAACATGAAGCAG-T 659 Query 676 -CTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGATATATACAGCATATTATGAA 734 |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 660 GCTTCCACGAATGCAAGATCGCGAAGAGCACAAGCCAAGATATATACAGCATATTATGAA 719 Query 735 ACAAGCAGAACGTAGA-GAGAAAGAACATGAGATAGTTTATGAGAGAAAGCTTGCGAAAG 793 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 720 ACAAGCAGAACGTAGAGGA-AAAGAACATGAAATAGTTTATGAGAGAAAGCTTGCGAAAG 778 Query 794 AAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAGTTTGTAACTGGTCCCTTTA 853 |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 779 AAAGGGCGAAAGACGAACATCTTTTTTCCGATAAAGAAAAGTTTGTAACTGGTCCCTTTA 838 Query 854 AAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGAAAGATTGCGTGAACTTCGAG 913 ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| Sbjct 839 AAAGAAAACTAGAGGAACAAAAGAAATGGCTGGCGGAAGAAAGATTTCGCGAACTTCGAG 898 Query 914 AGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGAATTCTACATCAACATTGGAA 973 | |||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| | Sbjct 899 AAGAAAGAGATGATGTTACAAAGAAGAACGACTTAAGTGATTTCTACTTCAACATTGGTA 958 Query 974 AAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGAGGCAGGGAGGCTCAAGGAGC 1033 |||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||| Sbjct 959 AAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGATGCAGAGAGACTCGAGGAGC 1018 Query 1034 TGAGAAAGGTAGATAGGCTTGAGGAGCTgagaaaagaagagacaaggaaagagaagaaaa 1093 ||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||| Sbjct 1019 TGAGAAAGGCAGATAGGCTCGAGGAGCCGAGAAAAGAAGAGACAATTAAAGAGAAGAAAA 1078 Query 1094 gaaaatcaccggagaaggaagTGTCCCCTGACTCAGGAGATTTTGGATTAAGTAGTaaaa 1153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GAAAATCACCGGAGAAGGAAGTGTCCCCTGACTCAGGAGATTTTGGATTAAGTAGTAAAA 1138 Query 1154 aaaGCGTCAAACCGCAAGACGCATCAATCAAAGAGGAAGCAAAA-GAAACGCAGAAAGCC 1212 |||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||| Sbjct 1139 AAAGCGTCAAACCGCA-------TCAATCAAAGAGGCAGCAAAAAGAAACGCCGAAAGCC 1191 Query 1213 ACTAGAGAGGATGCGATAGCGACTGCAAAAGAACGGTTTCTATCCCGTAAGAAGGCAAAG 1272 ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| Sbjct 1192 ACTAGAGAGGATGCGATAGCGGCTGCAAAAGAGCGGTTTGTATCCCGTAAGAAGGCAAAG 1251 Query 1273 ATAGAAAAGTAG 1284 |||||||||||| Sbjct 1252 ATAGAAAAGTAG 1263 > Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1 Length=1147 Score = 765 bits (414), Expect = 0.0 Identities = 573/647 (89%), Gaps = 21/647 (3%) Strand=Plus/Plus Query 421 AAGATTAAGAAGTACGGACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCT 480 ||||| |||||||||||| ||||||| || ||||| || |||||||| |||||||||||| Sbjct 40 AAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAAAACAATCATCATCT 99 Query 481 CGACCTCTACTTCGGAC-TGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGA 539 ||||||| ||||| ||| |||||||||||||||||| | || ||||| ||||||| || Sbjct 100 CGACCTCCACTTC-GACTTGCTTCAATATTTGGTGA--A-GAAGAAGATCACGATGTCGA 155 Query 540 GAAGGAGATTTCTCGACAAGCTTCAAAGAC-CAAGTCTCTTAAA-AAGATTGAGAAGCAG 597 ||||||||||||||| |||||||||||||| ||| |||||||| || |||||| ||||| Sbjct 156 GAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAG-CTCTTAAAGAA-ATTGAGGAGCAG 213 Query 598 CATAAGAAAG-CTATAGAGGAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGA 656 |||||||||| || |||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 214 CATAAGAAAGCCT-TAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGA 272 Query 657 CATTAAACATG-AAGCGGCTCTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGAT 715 || ||||| | |||| | ||||||||||||||||||||| ||||| | |||| |||||| Sbjct 273 TATGAAACA-GAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGCCAAGAT 331 Query 716 ATATACAGCATATT-ATGAAACAAGCAGAACGTAGAGAGAAAGAACATGAGATAGTTTAT 774 ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 332 ATATACAGCAT-TTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTAC 390 Query 775 GAGAGAAAGCTTGCGAAAGAAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAG 834 ||||||||||||||||| || || | |||||| |||||||||| |||||||||||||||| Sbjct 391 GAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAGAAAAG 450 Query 835 TTTGTAACTGGTCCCTT-TAAAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGA 893 |||||||||||| ||| |||||| ||||| |||||||||||||||||||||| |||||| Sbjct 451 TTTGTAACTGGT-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGA 509 Query 894 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGA 953 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 510 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGA 569 Query 954 ATTCTACATCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGA 1013 |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 570 TTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGA 629 Query 1014 GGCAGGGAGGCTCAAGGAGCTGAGAAAGG-T-AGATAGGCTTGAGGA 1058 || || ||| || |||| | ||||||| | ||| || || ||||| Sbjct 630 GGTAGAGAGACTTGAGGAACAAAGAAAGGCTGAGA-AG-CTCGAGGA 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47996752503 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5