BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27280.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1 1770 0.0
Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1 765 0.0
> Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1
Length=1263
Score = 1770 bits (958), Expect = 0.0
Identities = 1172/1272 (92%), Gaps = 28/1272 (2%)
Strand=Plus/Plus
Query 27 ACCTTTTAGTGCAAGTTTTAATCCTTCAAACCCATTAGGGTTTTTAGAGAATGTCCTTGA 86
||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||
Sbjct 6 ACCTTTTAGTGCAAGTTTTGATTCTTCAAACCCATTAGGGTTTTTGGAGAAAGTCCTTGA 65
Query 87 CTTTATTGGGAAAGAGAGTAACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGA 146
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTTTATTGGGAAAGAGAGCAACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGA 125
Query 147 TGCTGTTACTACCGCAAAGGAGAGGTTGAGGGAAAC-G-G-AGAAG-A-A-GACGGAGTC 200
||||||||| ||| |||||||||||||||||| | | | ||||| | | |||||||||
Sbjct 126 TGCTGTTACGGCCGTGAAGGAGAGGTTGAGGGAAGCAGAGAAGAAGAAGATGACGGAGTC 185
Query 201 CATGGATGTGGAGAAGGTTAGACCCTCGACATTGCCGTTTAATGCAAGTTTTGATCCTTC 260
|||||| ||||||||||| ||| ||||||| |||||||||||| || ||||||||| |||
Sbjct 186 CATGGAGGTGGAGAAGGTGAGAGCCTCGACGTTGCCGTTTAATTCACGTTTTGATCTTTC 245
Query 261 AGATCCATTAGGGTTCTTGGAGAAAGTCTTTGAATTTGTTGGG-AAGAAGAGCAATTTTC 319
||| ||||||||||| ||| |||||||| |||| ||| ||||| ||| ||||||||||||
Sbjct 246 AGACCCATTAGGGTTTTTGAAGAAAGTCCTTGACTTTATTGGGAAAG-AGAGCAATTTTC 304
Query 320 T-AGTGAAAGACAAGGCTGTGAATGCGATCATCACTGCTGTTACGGACGCCAAGGAGAGG 378
| || | |||||||||||| ||| | |||||| || |||||||||| ||| ||||| |||
Sbjct 305 TAAG-GCAAGACAAGGCTGAGAAGGAGATCATTACCGCTGTTACGGCCGCGAAGGATAGG 363
Query 379 TTGAA-GGAAGAGGAGAAGGAGAGTGTAAAGCAAGCAACAGTA-AAGATTAAGAAGTACG 436
|| || ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 364 TT-AAGGGAAGCGGAGAAGGAGAGTGTAAAGCAAGCAACAG-AGAAGATTAACAAGTACG 421
Query 437 GACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCTCGACCTCTACTTCGGA 496
||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 422 GACTGCAAATTAGGGCTCCGTCACAGAAAAAACAGTCATCATCTCGACCTCCACTTCGGA 481
Query 497 CTGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGAGAAGGAGATTTCTCGAC 556
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 482 CTGCTTCAATATTTGGTGAGGATGATGAAGACAACGATGTCGAGAAGGAGATTTCTCGAC 541
Query 557 AAGCTTCAAAGACCAAGTCTCTTAAAAAGATTGAGAAGCAGCATAAGAAAGCTATAG-AG 615
||||||||||||||||| ||||||||||||||||| |||| |||||||||||| | | ||
Sbjct 542 AAGCTTCAAAGACCAAGGCTCTTAAAAAGATTGAGGAGCAACATAAGAAAGCT-TTGAAG 600
Query 616 GAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGACATTAAACATGAAGCGGCT 675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 601 GAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGACATTAAACATGAAGCAG-T 659
Query 676 -CTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGATATATACAGCATATTATGAA 734
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 660 GCTTCCACGAATGCAAGATCGCGAAGAGCACAAGCCAAGATATATACAGCATATTATGAA 719
Query 735 ACAAGCAGAACGTAGA-GAGAAAGAACATGAGATAGTTTATGAGAGAAAGCTTGCGAAAG 793
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 ACAAGCAGAACGTAGAGGA-AAAGAACATGAAATAGTTTATGAGAGAAAGCTTGCGAAAG 778
Query 794 AAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAGTTTGTAACTGGTCCCTTTA 853
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 779 AAAGGGCGAAAGACGAACATCTTTTTTCCGATAAAGAAAAGTTTGTAACTGGTCCCTTTA 838
Query 854 AAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGAAAGATTGCGTGAACTTCGAG 913
||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct 839 AAAGAAAACTAGAGGAACAAAAGAAATGGCTGGCGGAAGAAAGATTTCGCGAACTTCGAG 898
Query 914 AGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGAATTCTACATCAACATTGGAA 973
| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct 899 AAGAAAGAGATGATGTTACAAAGAAGAACGACTTAAGTGATTTCTACTTCAACATTGGTA 958
Query 974 AAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGAGGCAGGGAGGCTCAAGGAGC 1033
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||
Sbjct 959 AAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGATGCAGAGAGACTCGAGGAGC 1018
Query 1034 TGAGAAAGGTAGATAGGCTTGAGGAGCTgagaaaagaagagacaaggaaagagaagaaaa 1093
||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1019 TGAGAAAGGCAGATAGGCTCGAGGAGCCGAGAAAAGAAGAGACAATTAAAGAGAAGAAAA 1078
Query 1094 gaaaatcaccggagaaggaagTGTCCCCTGACTCAGGAGATTTTGGATTAAGTAGTaaaa 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAAAATCACCGGAGAAGGAAGTGTCCCCTGACTCAGGAGATTTTGGATTAAGTAGTAAAA 1138
Query 1154 aaaGCGTCAAACCGCAAGACGCATCAATCAAAGAGGAAGCAAAA-GAAACGCAGAAAGCC 1212
|||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||
Sbjct 1139 AAAGCGTCAAACCGCA-------TCAATCAAAGAGGCAGCAAAAAGAAACGCCGAAAGCC 1191
Query 1213 ACTAGAGAGGATGCGATAGCGACTGCAAAAGAACGGTTTCTATCCCGTAAGAAGGCAAAG 1272
||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 1192 ACTAGAGAGGATGCGATAGCGGCTGCAAAAGAGCGGTTTGTATCCCGTAAGAAGGCAAAG 1251
Query 1273 ATAGAAAAGTAG 1284
||||||||||||
Sbjct 1252 ATAGAAAAGTAG 1263
> Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1
Length=1147
Score = 765 bits (414), Expect = 0.0
Identities = 573/647 (89%), Gaps = 21/647 (3%)
Strand=Plus/Plus
Query 421 AAGATTAAGAAGTACGGACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCT 480
||||| |||||||||||| ||||||| || ||||| || |||||||| ||||||||||||
Sbjct 40 AAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAAAACAATCATCATCT 99
Query 481 CGACCTCTACTTCGGAC-TGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGA 539
||||||| ||||| ||| |||||||||||||||||| | || ||||| ||||||| ||
Sbjct 100 CGACCTCCACTTC-GACTTGCTTCAATATTTGGTGA--A-GAAGAAGATCACGATGTCGA 155
Query 540 GAAGGAGATTTCTCGACAAGCTTCAAAGAC-CAAGTCTCTTAAA-AAGATTGAGAAGCAG 597
||||||||||||||| |||||||||||||| ||| |||||||| || |||||| |||||
Sbjct 156 GAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAG-CTCTTAAAGAA-ATTGAGGAGCAG 213
Query 598 CATAAGAAAG-CTATAGAGGAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGA 656
|||||||||| || |||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 214 CATAAGAAAGCCT-TAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGA 272
Query 657 CATTAAACATG-AAGCGGCTCTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGAT 715
|| ||||| | |||| | ||||||||||||||||||||| ||||| | |||| ||||||
Sbjct 273 TATGAAACA-GAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGCCAAGAT 331
Query 716 ATATACAGCATATT-ATGAAACAAGCAGAACGTAGAGAGAAAGAACATGAGATAGTTTAT 774
||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 332 ATATACAGCAT-TTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTAC 390
Query 775 GAGAGAAAGCTTGCGAAAGAAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAG 834
||||||||||||||||| || || | |||||| |||||||||| ||||||||||||||||
Sbjct 391 GAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAGAAAAG 450
Query 835 TTTGTAACTGGTCCCTT-TAAAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGA 893
|||||||||||| ||| |||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 451 TTTGTAACTGGT-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGA 509
Query 894 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGA 953
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 510 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGA 569
Query 954 ATTCTACATCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGA 1013
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 570 TTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGA 629
Query 1014 GGCAGGGAGGCTCAAGGAGCTGAGAAAGG-T-AGATAGGCTTGAGGA 1058
|| || ||| || |||| | ||||||| | ||| || || |||||
Sbjct 630 GGTAGAGAGACTTGAGGAACAAAGAAAGGCTGAGA-AG-CTCGAGGA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5