BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27285.1
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1 1478 0.0
Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1 726 0.0
Ahg922977 jgi|Araly1|922977|scaffold_104258.1 505 4e-142
> Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1
Length=1147
Score = 1478 bits (800), Expect = 0.0
Identities = 1028/1133 (91%), Gaps = 36/1133 (3%)
Strand=Plus/Plus
Query 205 TGGAATAGAAATCGAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAA 264
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TGGAAGAGAAATCGAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAA 85
Query 265 AACAATCATCATCTCGACCTCCACTTCGACCCGCTTCAATATTTGATGAAGAAGAAGATC 324
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 86 AACAATCATCATCTCGACCTCCACTTCGACTTGCTTCAATATTTGGTGAAGAAGAAGATC 145
Query 325 ACGACGTCGAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAAAGAAATTG 384
|||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 146 ACGATGTCGAGAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAGCTCTTAAAGAAATTG 205
Query 385 AGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCTGCTTTTTCATATGATGAAGTTT 444
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 206 AGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTT 265
Query 445 ATGATGATATGAAACAGAAAGCTGTTCTTCCTCGAATGCAAGATCGTGAAGAACGCAAGC 504
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 266 ATGATGATATGAAACAGAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGC 325
Query 505 CAAGGTATATACAGAATTTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAGATAG 564
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 326 CAAGATATATACAGCATTTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAG 385
Query 565 TTTATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTTTTTTCGGATAAAG 624
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 386 TTTACGAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAG 445
Query 625 AAAAGTTTGTTACTGGCGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCAG 684
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 446 AAAAGTTTGTAACTGGTGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGG 505
Query 685 AAGAAAGATTGCGTGAACTTCGTGAGGAAAGAGATGATGTTACTAAGAAGAAAGATTTGA 744
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 506 AAGAAAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGA 565
Query 745 GTGATTTCTACTTCAACATTGGAAAAAATGTCGCTTTTGGAGCTCGAGA-AGTCGAAGCT 803
||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||
Sbjct 566 GTGATTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAA-CGAAGCT 624
Query 804 AAAGAGGCAGAGA-AGCTCGAGGAACAAAGAAAGGCAGAGAAGCTCGAGGAACAAAGAAA 862
||||||| ||||| | || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 625 AAAGAGGTAGAGAGA-CTTGAGGAACAAAGAAAGGCTGAGAAGCTCGAGGAACAAAGAA- 682
Query 863 GG-CAGAGAAGC-TCGAGGAGCTGAGAAAAGAAGTAACAAGGGTAG-AGAAGAAACGAAA 919
|| ||||||||| | |||||||||| |||||||| |||||||| || ||| |||| ||||
Sbjct 683 GGACAGAGAAGCGT-GAGGAGCTGAAAAAAGAAGAAACAAGGG-AGGAGAGGAAAAGAAA 740
Query 920 ATCACC-G-GA-G-AA--G---GA-A-GTA--T--CTCCTGACTCGGGAGAATTTGGATC 964
|||||| | || | || | || | | | | |||||||||| |||| ||||||||
Sbjct 741 ATCACCAGAGAAGGAATTGCCAGAGAAGGAAGTGTCTCCTGACTCAAGAGATTTTGGATC 800
Query 965 AAGTCGTAGCAAAAGTTTGGAGCCACTAGAAGCAGAGCAAGCAGTTTCTGAAAAGGAGAT 1024
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 801 AAGTCGTAGCAAAAGTTTGGAGCCACAAGAAGCAGAGCAAGCAGTTTCTGAAAAGAAGAT 860
Query 1025 GGGTTCAGATGGCACTGAAGAGAGAAAGTCATCAATCAAAGAGGCAGCAAAAGAAGTGCC 1084
|||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 861 GGGTTCAGATGGTACTGAAGAGAGAGACTCTTCAATCAAAGAGGCAGCAAAAGAAGTGCC 920
Query 1085 GAAAGCCATTAACGACCAGAAGAGAAGAGAGGATGCGATCGCTGCCGCTAAAGAGAGGTT 1144
|||||||||||||||||| |||||||||||||||||||| ||||| || |||||| ||||
Sbjct 921 GAAAGCCATTAACGACCAAAAGAGAAGAGAGGATGCGATTGCTGCTGCGAAAGAGCGGTT 980
Query 1145 CCTGGCCCGTAAGAAGGCAAAAATTGAAGAG-TATGTGCAACTTGGCTGATTTCAGTCCA 1203
| ||||||||||||||||||| |||||||| | |||| |||||||| ||||| |||||
Sbjct 981 CTTGGCCCGTAAGAAGGCAAAGATTGAAGAACT-TGTGTAACTTGGCAGATTTTTGTCCA 1039
Query 1204 ATAGTT-A--AA-TCTTGGTGAACTTGTCTTCTTCTGATTATCGACCACCCTCTTTTTTA 1259
|| | | | || | || ||||||| ||||| || | || ||||||||||||| |||||
Sbjct 1040 AT-GATCACCAACTTTTCGTGAACTGGTCTT-TTGT--TTGTCGACCACCCTCTGTTTTA 1095
Query 1260 TAAGTAACTTTTCAAGATAACGCTTCTTATATTACAGGGTCTACTTCCATTAC 1312
||||||||||||| |||||||||||||| | |||| ||||||||||||||||
Sbjct 1096 -AAGTAACTTTTCATGATAACGCTTCTTAAACTACATGGTCTACTTCCATTAC 1147
> Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1
Length=1263
Score = 726 bits (393), Expect = 0.0
Identities = 579/666 (87%), Gaps = 23/666 (3%)
Strand=Plus/Plus
Query 218 GAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAAAACAATCATCATC 277
|||||| || ||||||||| ||||||| || ||||| || ||||||||||| ||||||||
Sbjct 405 GAAGATTAACAAGTACGGACTGCAAATTAGGGCTCCGTCACAGAAAAAACAGTCATCATC 464
Query 278 TCGACCTCCACTTC-GACCCGCTTCAATATTTGATGA--A-GAAGAAGATC-ACGACGTC 332
|||||||||||||| || | ||||||||||||| ||| | || ||||| | |||| |||
Sbjct 465 TCGACCTCCACTTCGGA-CTGCTTCAATATTTGGTGAGGATGATGAAGA-CAACGATGTC 522
Query 333 GAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAAAGAA-ATTGAGGAGCA 391
||||||||||||||||| ||||| |||||||||| |||| |||| || |||||||||||
Sbjct 523 GAGAAGGAGATTTCTCGACAAGCTTCAAAGACCAAGGCTCTTAAA-AAGATTGAGGAGCA 581
Query 392 GCATAAGAAAGCCTTAG-AGGAGGATCCTTCTGCTTTTTCATATGATGAAGTTTATGATG 450
|||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 582 ACATAAGAAAG-CTTTGAAGGAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATG 640
Query 451 ATATGAAACA-GAAAGCTGTTCTTCCTCGAATGCAAGATCGTGAAGAACGCAAGCCAAGG 509
| || ||||| | |||| || ||||| |||||||||||||| ||||| | |||||||||
Sbjct 641 ACATTAAACATG-AAGCAGTGCTTCCACGAATGCAAGATCGCGAAGAGCACAAGCCAAGA 699
Query 510 TATATACAGAAT-TTGATGAAACAGGCAGAACGTAGA-GAGAAAGAACATGAGATAGTTT 567
||||||||| || || |||||||| |||||||||||| || ||||||||||| |||||||
Sbjct 700 TATATACAGCATATT-ATGAAACAAGCAGAACGTAGAGGA-AAAGAACATGAAATAGTTT 757
Query 568 ATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTTTTTTCGGATAAAGAAA 627
|||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 758 ATGAGAGAAAGCTTGCGAAAGAAAGGGCGAAAGACGAACATCTTTTTTCCGATAAAGAAA 817
Query 628 AGTTTGTTACTGG-CGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCAGAA 686
||||||| ||||| | ||| |||||| ||||| ||||||||||||||||||||||| |||
Sbjct 818 AGTTTGTAACTGGTCCCTT-TAAAAGAAAACTAGAGGAACAAAAGAAATGGCTGGCGGAA 876
Query 687 GAAAGATTGCGTGAACTTCGTGAGGAAAGAGATGATGTTACTAAGAAGAAAGATTTGAGT 746
|||||||| || |||||||| || ||||||||||||||||| |||||||| || || |||
Sbjct 877 GAAAGATTTCGCGAACTTCGAGAAGAAAGAGATGATGTTACAAAGAAGAACGACTTAAGT 936
Query 747 GATTTCTACTTCAACATTGGAAAAAATGTCGCTTTTGGAGCTCGAGA-AGTCGAAGCTAA 805
|||||||||||||||||||| |||||||| || |||||||||||||| | |||||||||
Sbjct 937 GATTTCTACTTCAACATTGGTAAAAATGTGGCATTTGGAGCTCGAGATA-TCGAAGCTAG 995
Query 806 AGAGGCAGAGA-AGCTCGAGGAACAAAGAAAGGCAGAGAAGCTCGAGGAACAAAGAAAGG 864
||| ||||||| | |||||||| | ||||||||||| | ||||||||| | ||||| |
Sbjct 996 AGATGCAGAGAGA-CTCGAGGAGCTGAGAAAGGCAGATAGGCTCGAGGAGCCGAGAAAAG 1054
Query 865 CAGAGA 870
|||||
Sbjct 1055 AAGAGA 1060
> Ahg922977 jgi|Araly1|922977|scaffold_104258.1
Length=721
Score = 505 bits (273), Expect = 4e-142
Identities = 497/602 (83%), Gaps = 28/602 (5%)
Strand=Plus/Plus
Query 260 GAAAAAACAATCATCA-TCTCGACCTCCACTTCG-ACCCGCTTCAATATTTGATGAAGAA 317
||||| ||||||||| | ||||||||||||||| | | ||| || |||||| | ||||
Sbjct 50 GAAAAGGCAATCATCAGT-TCGACCTCCACTTCGTA-CTGCTCCATTATTTGGTCAAGAT 107
Query 318 GAAGATC-ACGACGTCGAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAA 376
||||| | |||| || || | ||| |||||||| ||||| |||||||||| | || | |
Sbjct 108 GAAGA-CAACGATGTGGATATGGAAATTTCTCGACAAGCTTCAAAGACCAAGGGTC-TTA 165
Query 377 AGA-AATTGAGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCTGCTTTTTCATATG 435
||| ||||||||||||||||||||||||||| |||||||| |||| ||||| | | || |
Sbjct 166 AGAGAATTGAGGAGCAGCATAAGAAAGCCTTGGAGGAGGACCCTTGTGCTTATGCTTACG 225
Query 436 ATGAAGTTTATGATGA-TATG-AAACAGAAAGCTGT-TCTTCCTCGAATGCAAGATCGTG 492
|||||||||||||| | | || ||| || |||| | |||||| |||||||| ||| |||
Sbjct 226 ATGAAGTTTATGATCAGT-TGAAAAAAG-AAGC-ATATCTTCCACGAATGCATGATTGTG 282
Query 493 AAGAACGCAAGCCAAGGTATATACAGAAT-TTGATGAAACAGGCAGAACGTAGAGAGAAA 551
|||| | |||| |||| ||| ||| | |||| ||||||||| || |||||| |||||
Sbjct 283 AAGAGCCCAAGTCAAGATATGCCCAG-CTATTGAGGAAACAGGCTGACCGTAGACAGAAA 341
Query 552 GAACATGAGATAGTTTATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTT 611
|||| ||| ||||||||||| ||||||||||| |||||||||| |||||| ||||||||
Sbjct 342 GAACGTGAAATAGTTTATGAAAGAAAGCTTGCCAAAGAGAGGGCCAAAGACCAACATCTT 401
Query 612 TTTTCGGATAAAGAAAAGTTTGTTACTGGCGCTTATAAAAGGAAACTTGAGGAAC-AAAA 670
||| | ||| ||| |||| |||||||||| || |||||||||||||| ||||||| | ||
Sbjct 402 TTTCCAGATCAAGTAAAGATTGTTACTGGTGCCTATAAAAGGAAACTAGAGGAACGAGAA 461
Query 671 GAAATGGCTGGCAGAAGAAAGATTGCGTGAACTTCGT-GAGGAAAGAGATGATGTTACTA 729
|||||||| || |||||||||||| |||||||| | || |||| |||||||||||| |
Sbjct 462 -CAATGGCTGTCACAAGAAAGATTGCTTGAACTTC-TAGAAGAAAAAGATGATGTTACAA 519
Query 730 AGAAGAAAGATTTGAGTGATTTCTACTTCAACATTGGAAAAAATGTCG-CTTTTGGAGCT 788
|||||| ||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 520 AGAAGACAGACTTGAGTGATTTCTACTTCAACATTGGAAAAAATGT-GACATTTGGAGCT 578
Query 789 CGAGA-AGTCGAA-GCTAAAGAGGCAGAGAAGCTCGAGGAACAAAGAAAGGC-AGAGAAG 845
||||| | || || |||| ||||||| ||| | || ||||||||| |||| | |||| ||
Sbjct 579 CGAGATA-TC-AATGCTAGAGAGGCAAAGAGGTTCAAGGAACAAA-AAAGACGAGAGGAG 635
Query 846 CT 847
||
Sbjct 636 CT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49064194179
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5