BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27290.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933137 jgi|Araly1|933137|scaffold_401125.1 961 0.0
> Ahg933137 jgi|Araly1|933137|scaffold_401125.1
Length=640
Score = 961 bits (520), Expect = 0.0
Identities = 605/645 (94%), Gaps = 9/645 (1%)
Strand=Plus/Plus
Query 15 TGGTGGCTG-aaaaaaaC-AATGGCGATGATGCTTCTGCAAATTCCTCCTTCGTCTTCCT 72
||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TGGTGGCTGAAAAAAAACAAATGGCGATGATGCTTCTGCAAATCCCTCCTTCGTCTTCCT 60
Query 73 TGTTGAACACCAGAAACCTTCAAATCCGATTCTTCCACTCTTCAG-TTTCAGCTTCCTCG 131
|||||||||| | |||||||||||||||||||||| ||||||| | || |||||||||||
Sbjct 61 TGTTGAACACAACAAACCTTCAAATCCGATTCTTCTACTCTTC-GATTCCAGCTTCCTCG 119
Query 132 AAGAAATTCAGATGCAGAGCCGTCCGTGAGAAGGCGGAGGACATTGATAAGAACATTTCG 191
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 120 AAGAAATTCAGATGCAGAGCCGTCCGTGAGAAGGCGGAGGAGATTGAGAAGAACACTTCG 179
Query 192 CCGCCGTCTTCTTCTCCTCCTCCTCCTTCCGCCGAAGAAGTTACCAAGAAATATGGCCTT 251
|||| ||| || ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 180 TCGCCATCTCCTCCTCCTCCTCCTTCTTCCGCTGAAGAAGTTACCAAGAAATATGGCCTC 239
Query 252 GAAGTTGGTCTATGGAAGATATTAAGCTCTAAGGATGATGAAGGAAGTGATGGAGACAAT 311
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 GAAGTTGGTCTATGGAAGATATTGAGCTCTAAGGATGATGAAGGAAGTGATGGAGAGGAT 299
Query 312 AAGAAGAAGAAATCAAAAACAGATGAGGCTAAAGAGTTACTTGCAAAGTATGGTGGTGCT 371
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 300 AAGAAGAAGAAATCAAAGACAGATGAGGCTAAAGAGTTGCTTGCTAAGTATGGTGGTGCT 359
Query 372 TATCTCGCTACATCTATTACTCTTTCTCTCATTTCCTTCTCACTCTGCTATGTCCTTGTG 431
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 360 TATCTCGCTACATCCATTACTCTTTCTCTCATTTCCTTTTCACTGTGTTATGTCCTTGTG 419
Query 432 ACTTCCGGTGTTGATGTTCAAGCTCTTCTTCTAAAGGTTGGGATTTCGACGAATGAGACA 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACTTCCGGTGTTGATGTTCAAGCTCTTCTTCTAAAGGTTGGGATTTCGACGAATGAGACT 479
Query 492 GGAGAGAAAGTAGGAGCCTTTGCTTTGGCTTACGCAGCGCATAAAGCTGCATCTCCGATA 551
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAGAGAAAGTAGGGGCTTTTGCTTTGGCTTACGCAGCGCATAAAGCTGCATCTCCGATA 539
Query 552 AGGTTTCCGCCTACAGTGGCTTTGACTCCTATTGTAGCCAATTGGATTGGGAAGAAAGTG 611
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 AGGTTTCCGCCTACGGTGGCTTTGACTCCTATTGTAGCCAGTTGGATTGGGAAGAAAGTG 599
Query 612 GACAAGGAGAAGGATGATGACAAGTAGCTTACTTT-GGAGGTATT 655
||||||||||||||||| | | |||||||| ||| |||||||||
Sbjct 600 GACAAGGAGAAGGATGA-GT-A-GTAGCTTA-TTTCGGAGGTATT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5