BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27300.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481629 jgi|Araly1|481629|fgenesh2_kg.4__689__AT2G27300.1 1539 0.0
> Ahg481629 jgi|Araly1|481629|fgenesh2_kg.4__689__AT2G27300.1
Length=1002
Score = 1539 bits (833), Expect = 0.0
Identities = 951/1007 (94%), Gaps = 11/1007 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAAGAAGCTGAGATGTCGATCGCGGTGTCGGCTTTGTTCCCTGGTTTTAGATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTAAAGAAGCTGAGATGTCGATCGCGGTGTCGGCTTTGTTCCCTGGTTTTAGATTC 60
Query 61 TCTCCTACTGATGTTGAACTTATCTCGTACTATCTTCGTCGTAAAATCGATGGTGATGAG 120
| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TGTCCTACCGATGTGGAACTTATCTCGTACTATCTTCGTCGTAAAATCGATGGCGATGAG 120
Query 121 AACTCTGTTGCTGTGATTGCTGAGGTCGAGATTTACAAGTTCGAGCCGTGGGACTTGCCA 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GACTCTGTTGCTGTGATTGCTGAGGTCGAGATTTACAAGTTCGAACCGTGGGACTTGCCA 180
Query 181 GAGGAATCGAAACTGAAATCGGAGAACGAGTGGTTTTACTTCTGCGCGAGGGGGAGGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAATCGAAACTGAAATCGGAGAACGAGTGGTTTTACTTCTGCGCGAGGGGGAGGAAG 240
Query 241 TACCCGCACGGGTCACAAAGCCGGCGAGCCACACAGCTAGGATATTGGAAAGCGACCGGT 300
||||||||||||||||| ||||||||||||||| | || ||||||||||||||||| |||
Sbjct 241 TACCCGCACGGGTCACAGAGCCGGCGAGCCACAAAACTTGGATATTGGAAAGCGACTGGT 300
Query 301 AAAGAGCGGAGTGTTAAATCCGGGAACCAAGTTGTTGGAACCAAGAGAACGCTTGTATTT 360
|||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| |||
Sbjct 301 AAAGAGCGGACTGTTAAATCGGGGAACCAAGATGTTGGAAGCAAGAGAACACTTGTTTTT 360
Query 361 CATATCGGTCGGGCTCCTCGTGGCGAGAGAACGGAGTGGATTATGCATGAATACTGCATC 420
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CATATCGGTCGGGCTCCTCGGGGCGAGAGAACCGAGTGGATTATGCATGAATACTGCATC 420
Query 421 CATGGAGCCCCACAGGATGCATTAGTGGTGTGCCGGTTAAGAAAAAATGCTGATTTTCGG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATGGCGCCCCACAGGATGCATTAGTGGTGTGCCGGTTAAGAAAAAATGCTGATTTTCGG 480
Query 481 GCTAGTTCGACCCAAAA--AA-TGGAGGATGGTGTTGTGCAAGACGATGGCTACGTTGGC 537
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGTTCGAGTCAAAAGCAAATGGAGGATGGTGTTGTGCAAGACGATGGCTACGTTGGC 540
Query 538 CAAAGAGGTGGTTTGGAGAAGGAGGACAAATCCTACTATGAATCTGAGCATCAGATACCA 597
||||| ||||||| ||| |||||||| ||||| || | || | ||| |||| |||||
Sbjct 541 CAAAGCGGTGGTTCGGAAAAGGAGGAGAAATCGTATTCTGTTTATGA---TCAGCTACCA 597
Query 598 AATGGTGACATCGCAGAATCATCAAATGTTGTTGAGGATCAGGCCGATACCGATGATGAT 657
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 598 AATGGTGACATCGCAGAATCATCAAACGTTGTTGAGTATCAGGCCGATACCGATGATGAT 657
Query 658 TGTTACGCCGAGATTCTGAACGATGATATAATAAAGCTCGACGAAGAAGCGTTGAAAGCT 717
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 658 TGTTACGCCGAGATTCTAAACGATGATATAATAAAGCTCGATGAAGAAGCATTGAAAGCT 717
Query 718 AGCCAAGCGTTTCGACCAACTAATCCAACTCATCAAGAAACAATATCAAGCGAGTCATC- 776
|||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 718 AGCCAAGCTTTTCGACAAATTAATCCAACTCATCAAGAAACAATATCCAGCGAGTCATCA 777
Query 777 --GAGTAAGAGGTCAAAATGTGGTATaaaaaaaGAATCAACGGAAACAATGAATTGTTAC 834
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 TCGAGTAAGAGGTCAAAATGTGGTATAAAAAAGGAATCAACGGAAACAATGAATTGTTAC 837
Query 835 GCTTTGTTCAGGATCAAGAACGTTGCCGGAACCGACTCCAGCTGGAGATTCCCGAACCCG 894
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTTTGTTCAGGATAAAGAACGTTGCCGGAACCGACTCCAGCTGGAGATTCCCGAACCCG 897
Query 895 TTCAAAATCAAGAAAGATGATAGCCAGAGATTGATGAAGAATGTTCTGGCCACTACTGTT 954
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTCAACATCAAGAAAGATGATAGCCAGAGATTGATGAAGAATGTTCTGGCCACTACTGTT 957
Query 955 TTCTTGGCTATCTTATTTTCTTTCTTTTGGACTGTATTAATAGCTAG 1001
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 TTCTTGGCTATCTTATTTTCT--CTTTTGGACTGTATTAATAGCTAG 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5