BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27310.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481630 jgi|Araly1|481630|fgenesh2_kg.4__690__AT2G27310.1 1711 0.0
> Ahg481630 jgi|Araly1|481630|fgenesh2_kg.4__690__AT2G27310.1
Length=1086
Score = 1711 bits (926), Expect = 0.0
Identities = 1033/1086 (95%), Gaps = 2/1086 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACCGTCGATGTCATCAACGGTGATTCAATCTCAACTCTTCATTCTGACATAATC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGGCAACCGTCGATGTCATCAACGGTGATTCAATCTCAACTCTTCATCCTGATATAATC 60
Query 61 CAAACCCAAATCTTGACCCGACTCGATGGTCCGACGCTAGCCTCCACCGCAACAACCTCT 120
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 61 CAAACCCAAATCTTGACCCGACTCGATGGTCCGACGTTAGCCTCCGCCGCAACAACCTCC 120
Query 121 TCTTACCTCCAAACTCTATGCACGGAAGAGAAACTCTGGCAAGAACTCTCCATCGACACG 180
||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCTTATCTCCAAACTCTTTGTACGGAAGAGAAACTCTGGCAAGAACTCTCCATCGCCACG 180
Query 181 TGGCCTTCGATCAATGATCCACGTGTTGTCCAAGCTATCTCCTCTTTCCCTTCCGGTTAC 240
|||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 181 TGGCCTGCGATCAATGATCCACGTGTTGTCCGAGCCATTTCCTCTTTCCCTTCCGGTTAC 240
Query 241 CGTTCTTTCTTTGCTGACTCGTACCCGTTCACTGAACACACGTGGCAGTCTGAAAAACAT 300
|||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 241 CGTTCTTTTTTTGCTGACTCGTACCCGTTCAGTGAACACACGTGGCAGTCCGAAAAACAT 300
Query 301 GATCCACCGACGGGATTAATCTCAGCCGTTGATTTATACTACAGAGGAGAGATTATATAC 360
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 301 GATCCACCGACGGGATTAATCTCAGCCGTTGATTTATACTATAGAGGAGATATTATCTAC 360
Query 361 TCGAAGGTACAAGAGATGGAAACAGAGAAAGGTAAATCAGGATGGTTCTTGTCATCACCG 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 361 TCGAAGGTACAAGAGATGGAAACAGAGAAATGTAAATCAGGATGGTTCTTGTCATCGCCT 420
Query 421 TTTCGGGTCGATATACTCGACCCGAAAGAGTCGGTCCAAACCCGGATTCGATATCCGGGT 480
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 TTTCGGGTCGATATACTCGACCCGAAAGAGTCGGTACAGACCCGGATTCGATATCCGGGT 480
Query 481 GGGGACTACGAAGCGTGGGTGAAAGATATGGAAGAGAGCATGAAACTTAATTGGATACTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GGGGACTACGAAGCGTGGGTGAAAGATATGGAAGAGAGCATGAAACTTAATTGGATATTA 540
Query 541 ATCGATCCGATCAAGAAACGAGCGGCGAATATATCTAGTCGAAAGGCGGTGTCGGCGCGG 600
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 541 ATCGATCCAATCAAGAAACGGGCAGCGAATATATCTAGTCGAAAGGCGGTGTCGGCGAGG 600
Query 601 CGGAACTGGCTAACGGGGGATTTAGAAATACGGTTTTCAACGGTAGTGACGGCGGAGGCG 660
||||| ||| ||||||| |||||||||||| |||||||||| |||||||||||| ||||
Sbjct 601 CGGAATTGGTTAACGGGAGATTTAGAAATAAGGTTTTCAACTATAGTGACGGCGGCGGCG 660
Query 661 GCGGAAGTGGCGGCGGTTGTGTCATGCGGGTCAGCGGAAGCGTGGAAAGAGGTGGATGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCGGAAGTGGCGGCGGTTGTGTCATGCGGGTCAGCGGAAGCGTGGAAAGAGGTGGATGAG 720
Query 721 GAAGTGGGAGGAGAAATACACGTGAGGGACGTGAGGCTACAAGTAGAGGACATAGAAGGA 780
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 721 GAAGTGGGAGGAGAAATACACGTGAGAGACATGAGGCTACAAGTTGAGGACATAGAAGGA 780
Query 781 AAATGTATGAAAGGTAGGGATAGTTTGGTAATTTTACAAGGGTTGTTAGATGGAAAGAGA 840
|||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 AAATGTATGAAAGGGAAGGATAGTTTGGTAATTTTACAAGGGTTGTTAGAAGGAAAGAGA 840
Query 841 TCGTGTAAAGATGATGAAGAGAGAAGAGCTAAAGAAAGGTATGAAGAATACGTGCGAATG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TCGTGTAAAGATGATGAAGAGAGAAGAGCTAAAGAAAGGTATGACGAATACGTGCGAATG 900
Query 901 AAGATACAATGGAGAGAGAATAAAGAGAGGAGAGAAAAAGCTCAAGACACAATTTGTATG 960
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 AAGATACAATGGAGAGAGAATAAAGAGAGGAAAGAAAAAGCTCAAGACACAATTTGTATG 960
Query 961 ATCTTTGGGTTCTCTATGTTTGTGCTTTTGTGGAGTTTTATTTTGTTAAGGTAAATAACT 1020
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 961 ATCTTTGGGTTCGCTTTGTTTGTGCTTTTGTGGAGTTTTATTTTGTTACGGTAAATAACT 1020
Query 1021 ATAGAAAGGTACAAAAATACTT-AAA-TGATCCAATAATACATACATTTCTTTGTCATCt 1078
| ||||| |||||||||||||| ||| |||||||||||||| |||||||||||||||| |
Sbjct 1021 AAAGAAAAGTACAAAAATACTTTAAAGTGATCCAATAATACGTACATTTCTTTGTCATAT 1080
Query 1079 tttttt 1084
||||||
Sbjct 1081 TTTTTT 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5