BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27315.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900438 jgi|Araly1|900438|Al_scaffold_0004_1088                    527    2e-149


> Ahg900438 jgi|Araly1|900438|Al_scaffold_0004_1088
Length=363

 Score =  527 bits (285),  Expect = 2e-149
 Identities = 340/366 (93%), Gaps = 6/366 (2%)
 Strand=Plus/Plus

Query  1    ATGGGAAGCAAAGCTATTGTATCAGTCTTGTTAATGGCATCCCTTTGTGGTACCATTT-T  59
            ||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||| |
Sbjct  1    ATGGGAAGCAAAGCTGTTGTATCAATCTTGTTAATGGTTTCCCTTTGTGGTACCATTTCT  60

Query  60   TGTTACACAAGGAGTAGCTGAAATGCAAAAGCCA-CCGATGTTTCCAGGACTTTTCCAAC  118
            | | || |||||||||||||||||||||||| || ||||  |||||||||||||||| ||
Sbjct  61   T-TCACTCAAGGAGTAGCTGAAATGCAAAAG-CAGCCGACATTTCCAGGACTTTTCCCAC  118

Query  119  CAGGCTCACCCGTTGATCTTGTAAAATGTAT-GTCGTCTCTCTCCAACGTTGAAGGATGT  177
            | |||| |||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||
Sbjct  119  CTGGCTTACCCATTGATCTAGTAAAATGT-TGGTCGTCTCTCTTCAACGTTGAAGGATGT  177

Query  178  GTGCTCGAAATCTCTAAATCAATTTTCTCCGGCAAATTTGAAAATATTGAAGGCGCATGT  237
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  178  GTGCTCGAAATCTCTAAATCAATTTTCTCAGGCAAATTTGAAAATATTGAAGGCGCATGT  237

Query  238  TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCGAAATGTTTCCGTTGAATCCG  297
            ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct  238  TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCCATATGTTTCCGTTGAATCCG  297

Query  298  TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCACGTATTGTCCCAAAATCTCCTACACAT  357
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct  298  TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCGCGTATTGTCCCAAACTCTCCTACACAC  357

Query  358  AACTAA  363
            ||||||
Sbjct  358  AACTAA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5