BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27315.1 Length=363 Score E Sequences producing significant alignments: (Bits) Value Ahg900438 jgi|Araly1|900438|Al_scaffold_0004_1088 527 2e-149 > Ahg900438 jgi|Araly1|900438|Al_scaffold_0004_1088 Length=363 Score = 527 bits (285), Expect = 2e-149 Identities = 340/366 (93%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 1 ATGGGAAGCAAAGCTATTGTATCAGTCTTGTTAATGGCATCCCTTTGTGGTACCATTT-T 59 ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| | Sbjct 1 ATGGGAAGCAAAGCTGTTGTATCAATCTTGTTAATGGTTTCCCTTTGTGGTACCATTTCT 60 Query 60 TGTTACACAAGGAGTAGCTGAAATGCAAAAGCCA-CCGATGTTTCCAGGACTTTTCCAAC 118 | | || |||||||||||||||||||||||| || |||| |||||||||||||||| || Sbjct 61 T-TCACTCAAGGAGTAGCTGAAATGCAAAAG-CAGCCGACATTTCCAGGACTTTTCCCAC 118 Query 119 CAGGCTCACCCGTTGATCTTGTAAAATGTAT-GTCGTCTCTCTCCAACGTTGAAGGATGT 177 | |||| |||| ||||||| ||||||||| | ||||||||||| |||||||||||||||| Sbjct 119 CTGGCTTACCCATTGATCTAGTAAAATGT-TGGTCGTCTCTCTTCAACGTTGAAGGATGT 177 Query 178 GTGCTCGAAATCTCTAAATCAATTTTCTCCGGCAAATTTGAAAATATTGAAGGCGCATGT 237 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 178 GTGCTCGAAATCTCTAAATCAATTTTCTCAGGCAAATTTGAAAATATTGAAGGCGCATGT 237 Query 238 TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCGAAATGTTTCCGTTGAATCCG 297 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 238 TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCCATATGTTTCCGTTGAATCCG 297 Query 298 TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCACGTATTGTCCCAAAATCTCCTACACAT 357 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 298 TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCGCGTATTGTCCCAAACTCTCCTACACAC 357 Query 358 AACTAA 363 |||||| Sbjct 358 AACTAA 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12934744671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5